Wall clock time and date at job start Sat Apr 11 2020 06:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86803 * 119.99731 * 2 1 4 4 H 1.48496 * 109.47005 * 269.99603 * 3 2 1 5 5 H 1.48492 * 109.47210 * 29.99706 * 3 2 1 6 6 H 1.48503 * 109.46671 * 149.99701 * 3 2 1 7 7 C 1.38792 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99825 * 0.02562 * 7 2 1 9 9 S 1.76197 * 120.00072 * 180.02562 * 7 2 1 10 10 C 1.81006 * 100.00167 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47096 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00611 * 0.02562 * 11 10 9 13 13 N 1.34784 * 119.99544 * 180.02562 * 11 10 9 14 14 C 1.47584 * 134.48497 * 180.02562 * 13 11 10 15 15 C 1.53950 * 86.11381 * 155.35829 * 14 13 11 16 16 C 1.53001 * 113.74447 * 137.94707 * 15 14 13 17 17 N 1.46493 * 109.47084 * 176.92300 * 16 15 14 18 18 C 1.34784 * 119.99864 * 180.02562 * 17 16 15 19 19 O 1.21574 * 119.99695 * 359.72925 * 18 17 16 20 20 C 1.47690 * 119.99835 * 179.72591 * 18 17 16 21 21 C 1.39487 * 122.09877 * 179.73628 * 20 18 17 22 22 C 1.35000 * 111.68389 * 179.78466 * 21 20 18 23 23 S 1.71763 * 105.44902 * 0.43309 * 22 21 20 24 24 N 1.30601 * 122.10580 * 0.02621 * 20 18 17 25 25 C 1.47812 * 134.45978 * 359.86792 * 13 11 10 26 26 H 0.97001 * 119.99899 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46764 * 59.99739 * 10 9 7 28 28 H 1.09004 * 109.47315 * 300.00077 * 10 9 7 29 29 H 1.08995 * 113.77346 * 41.05932 * 14 13 11 30 30 H 1.08997 * 113.76353 * 269.65278 * 14 13 11 31 31 H 1.08995 * 113.74045 * 269.15563 * 15 14 13 32 32 H 1.09007 * 109.46593 * 56.92557 * 16 15 14 33 33 H 1.09006 * 109.47216 * 296.93015 * 16 15 14 34 34 H 0.97000 * 120.00740 * 359.72857 * 17 16 15 35 35 H 1.08001 * 124.16049 * 359.97438 * 21 20 18 36 36 H 1.07999 * 127.28025 * 180.17258 * 22 21 20 37 37 H 1.08998 * 113.76764 * 90.38079 * 25 13 11 38 38 H 1.08994 * 113.83494 * 318.91755 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2019 0.0012 10 6 4.0867 -2.9845 0.0009 11 6 5.5731 -3.2324 0.0008 12 8 6.3442 -2.2963 0.0014 13 7 6.0457 -4.4947 0.0001 14 6 7.3944 -5.0940 0.0002 15 6 6.7319 -6.3279 0.6394 16 6 7.2304 -7.6583 0.0717 17 7 6.5967 -8.7650 0.7927 18 6 6.8875 -10.0389 0.4621 19 8 7.6719 -10.2695 -0.4376 20 6 6.2533 -11.1546 1.1930 21 6 6.5182 -12.4888 0.8841 22 6 5.8311 -13.3319 1.6838 23 16 4.9153 -12.3247 2.7313 24 7 5.4049 -10.9541 2.1655 25 6 5.4207 -5.8342 0.0017 26 1 -0.4850 0.8401 -0.0004 27 1 3.6441 -3.4313 -0.8893 28 1 3.6434 -3.4318 0.8907 29 1 8.1011 -4.5856 0.6561 30 1 7.7938 -5.2771 -0.9973 31 1 6.7246 -6.3069 1.7292 32 1 8.3124 -7.7206 0.1887 33 1 6.9752 -7.7203 -0.9863 34 1 5.9711 -8.5811 1.5108 35 1 7.1926 -12.8081 0.1033 36 1 5.8497 -14.4115 1.6658 37 1 5.2389 -6.2353 -0.9953 38 1 4.5549 -5.9154 0.6588 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001745996336.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:32 Heat of formation + Delta-G solvation = 11.429666 kcal Electronic energy + Delta-G solvation = -23061.715202 eV Core-core repulsion = 19351.829118 eV Total energy + Delta-G solvation = -3709.886084 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.96214 -40.27836 -38.72465 -37.67836 -35.08780 -32.45156 -32.17992 -31.09654 -29.24904 -27.29481 -26.39036 -25.67462 -25.25202 -22.15205 -21.32192 -20.43089 -19.18021 -18.82069 -18.23444 -17.69344 -16.83098 -16.57747 -16.16107 -15.79785 -15.48187 -15.01478 -14.99183 -14.80814 -14.30403 -13.94060 -13.82207 -13.75775 -13.43961 -13.03732 -12.89045 -12.82077 -12.27147 -12.03785 -11.82032 -11.75634 -11.65477 -11.27249 -11.15496 -11.01662 -10.62991 -10.44755 -10.42660 -9.86513 -9.61262 -9.50190 -9.30057 -9.01577 -8.71723 -8.51698 -6.93823 -6.30054 -4.02166 0.04764 0.91169 1.25744 1.26546 2.52510 2.65078 2.79139 2.91881 3.08754 3.32536 3.49816 3.55521 3.93312 4.17212 4.31455 4.35675 4.40245 4.47117 4.74163 4.77361 4.78544 4.98450 5.04730 5.08914 5.19818 5.23885 5.26697 5.27594 5.35060 5.48207 5.71788 5.74225 5.82276 5.90446 5.98357 5.99797 7.02032 7.67821 7.69639 7.92971 8.39463 8.40311 9.16006 10.79094 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.018672 B = 0.001855 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.212128 B =15090.783718 C =16299.315637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.116 4.116 11 C 0.555 3.445 12 O -0.517 6.517 13 N -0.651 5.651 14 C 0.121 3.879 15 C -0.139 4.139 16 C 0.128 3.872 17 N -0.710 5.710 18 C 0.593 3.407 19 O -0.528 6.528 20 C 0.047 3.953 21 C -0.134 4.134 22 C -0.285 4.285 23 S 0.479 5.521 24 N -0.521 5.521 25 C 0.106 3.894 26 H 0.271 0.729 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.111 0.889 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.411 0.589 35 H 0.173 0.827 36 H 0.188 0.812 37 H 0.088 0.912 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.941 -30.284 5.180 33.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.267 4.267 11 C 0.344 3.656 12 O -0.391 6.391 13 N -0.390 5.390 14 C -0.002 4.002 15 C -0.158 4.158 16 C 0.004 3.996 17 N -0.362 5.362 18 C 0.374 3.626 19 O -0.403 6.403 20 C -0.128 4.128 21 C -0.167 4.167 22 C -0.434 4.434 23 S 0.634 5.366 24 N -0.357 5.357 25 C -0.017 4.017 26 H 0.081 0.919 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.129 0.871 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.247 0.753 35 H 0.190 0.810 36 H 0.205 0.795 37 H 0.107 0.893 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 13.065 -27.985 6.038 31.469 hybrid contribution 0.036 -0.733 -1.195 1.403 sum 13.100 -28.718 4.843 31.934 Atomic orbital electron populations 1.69941 1.05893 1.27780 1.48033 1.24715 0.94468 0.98978 0.93165 0.86729 0.81890 0.83246 0.79961 1.19185 1.19899 1.15928 1.22300 0.88173 0.97547 1.58834 0.89392 1.84795 1.09394 0.99967 1.97425 1.23217 0.93572 1.04195 1.05671 1.20005 0.90460 0.80305 0.74808 1.90712 1.58945 1.40950 1.48485 1.49976 1.08841 1.04402 1.75745 1.23001 0.87210 0.89198 1.00833 1.23471 0.97170 0.93245 1.01931 1.21422 0.98219 0.83340 0.96581 1.45807 1.46909 1.04929 1.38569 1.17209 0.81081 0.81886 0.82455 1.90830 1.35016 1.84227 1.30266 1.21144 0.99487 0.95228 0.96945 1.21425 1.02602 0.90170 1.02469 1.27261 1.05184 1.07071 1.03839 1.80660 1.37036 0.87755 1.31121 1.72232 1.17774 1.29296 1.16360 1.23349 0.96801 0.80475 1.01048 0.91924 0.88638 0.88590 0.89601 0.89508 0.87105 0.90267 0.90273 0.75281 0.80993 0.79473 0.89345 0.89541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.62 13.97 55.49 0.78 -25.84 16 2 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 3 Si 0.86 21.92 27.74 -169.99 -4.72 17.20 16 4 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 7 C -0.52 -15.11 10.04 30.94 0.31 -14.80 16 8 H 0.09 2.65 8.03 -52.48 -0.42 2.23 16 9 S -0.14 -3.66 18.55 -107.50 -1.99 -5.66 16 10 C -0.12 -2.32 5.91 36.00 0.21 -2.11 16 11 C 0.55 10.34 8.07 -10.98 -0.09 10.25 16 12 O -0.52 -11.63 16.59 5.56 0.09 -11.54 16 13 N -0.65 -8.68 3.61 -178.16 -0.64 -9.32 16 14 C 0.12 1.17 8.41 -2.96 -0.02 1.14 16 15 C -0.14 -0.99 3.93 -89.70 -0.35 -1.34 16 16 C 0.13 0.89 5.51 -4.04 -0.02 0.86 16 17 N -0.71 -5.41 5.55 -61.30 -0.34 -5.75 16 18 C 0.59 5.72 7.81 -12.40 -0.10 5.62 16 19 O -0.53 -6.52 16.66 5.30 0.09 -6.43 16 20 C 0.05 0.39 6.66 -84.06 -0.56 -0.17 16 21 C -0.13 -0.89 9.98 -40.27 -0.40 -1.29 16 22 C -0.28 -1.19 11.41 29.58 0.34 -0.86 16 23 S 0.48 2.19 23.20 -107.50 -2.49 -0.30 16 24 N -0.52 -3.97 10.71 24.84 0.27 -3.70 16 25 C 0.11 0.96 8.18 -2.85 -0.02 0.94 16 26 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 27 H 0.10 1.80 8.14 -51.91 -0.42 1.37 16 28 H 0.10 1.79 8.14 -51.91 -0.42 1.37 16 29 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 0.73 8.10 -51.93 -0.42 0.30 16 31 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.58 7.88 -51.93 -0.41 0.17 16 34 H 0.41 2.72 7.94 -40.82 -0.32 2.39 16 35 H 0.17 1.04 7.99 -52.49 -0.42 0.62 16 36 H 0.19 0.24 8.06 -52.49 -0.42 -0.19 16 37 H 0.09 0.71 7.92 -51.93 -0.41 0.30 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 362.01 15.07 5.46 5.46 Total: -1.00 -37.39 362.01 -8.84 -46.23 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -4.52 Total: -1.28 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -0.81 Total: 0.95 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: 0.06 Total: -44.61 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: 0.18 Total: -17.97 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.72 Total: 17.20 kcal Atomic # 16 Polarization: -1.47 SS G_CDS: -4.49 Total: -5.96 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -37.39 -8.84 -46.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001745996336.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.655 kcal (2) G-P(sol) polarization free energy of solvation -37.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds