Wall clock time and date at job start Sat Apr 11 2020 06:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86803 * 119.99731 * 2 1 4 4 H 1.48496 * 109.47005 * 269.99603 * 3 2 1 5 5 H 1.48492 * 109.47210 * 29.99706 * 3 2 1 6 6 H 1.48503 * 109.46671 * 149.99701 * 3 2 1 7 7 C 1.38792 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99825 * 0.02562 * 7 2 1 9 9 S 1.76197 * 120.00072 * 180.02562 * 7 2 1 10 10 C 1.81006 * 100.00167 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47096 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00611 * 0.02562 * 11 10 9 13 13 N 1.34784 * 119.99544 * 180.02562 * 11 10 9 14 14 C 1.47584 * 134.48497 * 180.02562 * 13 11 10 15 15 C 1.53950 * 86.11381 * 155.35829 * 14 13 11 16 16 C 1.53001 * 113.74447 * 137.94707 * 15 14 13 17 17 N 1.46493 * 109.47084 * 176.92300 * 16 15 14 18 18 C 1.34784 * 119.99864 * 180.02562 * 17 16 15 19 19 O 1.21574 * 119.99695 * 359.72925 * 18 17 16 20 20 C 1.47690 * 119.99835 * 179.72591 * 18 17 16 21 21 C 1.39487 * 122.09877 * 179.73628 * 20 18 17 22 22 C 1.35000 * 111.68389 * 179.78466 * 21 20 18 23 23 S 1.71763 * 105.44902 * 0.43309 * 22 21 20 24 24 N 1.30601 * 122.10580 * 0.02621 * 20 18 17 25 25 C 1.47812 * 134.45978 * 359.86792 * 13 11 10 26 26 H 0.97001 * 119.99899 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46764 * 59.99739 * 10 9 7 28 28 H 1.09004 * 109.47315 * 300.00077 * 10 9 7 29 29 H 1.08995 * 113.77346 * 41.05932 * 14 13 11 30 30 H 1.08997 * 113.76353 * 269.65278 * 14 13 11 31 31 H 1.08995 * 113.74045 * 269.15563 * 15 14 13 32 32 H 1.09007 * 109.46593 * 56.92557 * 16 15 14 33 33 H 1.09006 * 109.47216 * 296.93015 * 16 15 14 34 34 H 0.97000 * 120.00740 * 359.72857 * 17 16 15 35 35 H 1.08001 * 124.16049 * 359.97438 * 21 20 18 36 36 H 1.07999 * 127.28025 * 180.17258 * 22 21 20 37 37 H 1.08998 * 113.76764 * 90.38079 * 25 13 11 38 38 H 1.08994 * 113.83494 * 318.91755 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2019 0.0012 10 6 4.0867 -2.9845 0.0009 11 6 5.5731 -3.2324 0.0008 12 8 6.3442 -2.2963 0.0014 13 7 6.0457 -4.4947 0.0001 14 6 7.3944 -5.0940 0.0002 15 6 6.7319 -6.3279 0.6394 16 6 7.2304 -7.6583 0.0717 17 7 6.5967 -8.7650 0.7927 18 6 6.8875 -10.0389 0.4621 19 8 7.6719 -10.2695 -0.4376 20 6 6.2533 -11.1546 1.1930 21 6 6.5182 -12.4888 0.8841 22 6 5.8311 -13.3319 1.6838 23 16 4.9153 -12.3247 2.7313 24 7 5.4049 -10.9541 2.1655 25 6 5.4207 -5.8342 0.0017 26 1 -0.4850 0.8401 -0.0004 27 1 3.6441 -3.4313 -0.8893 28 1 3.6434 -3.4318 0.8907 29 1 8.1011 -4.5856 0.6561 30 1 7.7938 -5.2771 -0.9973 31 1 6.7246 -6.3069 1.7292 32 1 8.3124 -7.7206 0.1887 33 1 6.9752 -7.7203 -0.9863 34 1 5.9711 -8.5811 1.5108 35 1 7.1926 -12.8081 0.1033 36 1 5.8497 -14.4115 1.6658 37 1 5.2389 -6.2353 -0.9953 38 1 4.5549 -5.9154 0.6588 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001745996336.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:32 Heat of formation + Delta-G solvation = -16.763411 kcal Electronic energy + Delta-G solvation = -23062.937745 eV Core-core repulsion = 19351.829118 eV Total energy + Delta-G solvation = -3711.108627 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.65402 -41.18268 -39.45143 -38.85742 -35.83730 -34.69749 -32.72910 -32.20845 -30.40307 -28.10850 -27.83221 -27.18704 -26.05753 -22.70108 -22.09457 -21.09662 -20.41682 -19.57445 -19.25275 -18.79773 -18.06519 -17.38303 -17.20948 -16.94799 -16.70088 -16.58786 -15.95926 -15.80793 -15.38676 -15.06516 -14.92357 -14.51692 -14.32877 -14.24084 -14.09514 -13.72434 -13.52952 -13.39584 -13.04309 -13.01153 -12.67618 -12.42287 -12.30524 -12.18407 -11.90972 -11.88360 -11.19441 -11.14779 -10.94034 -10.83911 -10.57960 -10.23451 -9.81686 -9.73445 -9.04026 -8.53841 -6.25655 -0.41210 0.54996 0.74966 0.82589 0.92057 1.29816 1.40905 1.47696 1.51475 1.90683 2.06145 2.15481 2.23090 2.63668 2.84146 3.22200 3.42327 3.70240 3.73791 3.89182 4.01661 4.12782 4.17132 4.37183 4.42723 4.44688 4.53591 4.57438 4.58540 4.71285 4.76623 4.84679 4.88844 5.16675 5.24678 5.38009 5.68358 6.08547 6.39781 6.50497 6.90994 7.01611 7.04225 8.58482 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.018672 B = 0.001855 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.212128 B =15090.783718 C =16299.315637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.046 3.954 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.257 1.257 6 H -0.238 1.238 7 C -0.529 4.529 8 H 0.062 0.938 9 S -0.176 6.176 10 C -0.102 4.102 11 C 0.554 3.446 12 O -0.566 6.566 13 N -0.649 5.649 14 C 0.115 3.885 15 C -0.110 4.110 16 C 0.133 3.867 17 N -0.702 5.702 18 C 0.588 3.412 19 O -0.564 6.564 20 C 0.024 3.976 21 C -0.156 4.156 22 C -0.269 4.269 23 S 0.529 5.471 24 N -0.549 5.549 25 C 0.101 3.899 26 H 0.278 0.722 27 H 0.107 0.893 28 H 0.110 0.890 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.122 0.878 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.417 0.583 35 H 0.171 0.829 36 H 0.219 0.781 37 H 0.105 0.895 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.598 -32.269 5.913 35.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.160 4.160 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.181 1.181 6 H -0.162 1.162 7 C -0.677 4.677 8 H 0.080 0.920 9 S 0.051 5.949 10 C -0.252 4.252 11 C 0.343 3.657 12 O -0.446 6.446 13 N -0.386 5.386 14 C -0.007 4.007 15 C -0.129 4.129 16 C 0.010 3.990 17 N -0.354 5.354 18 C 0.371 3.629 19 O -0.443 6.443 20 C -0.149 4.149 21 C -0.188 4.188 22 C -0.418 4.418 23 S 0.684 5.316 24 N -0.386 5.386 25 C -0.021 4.021 26 H 0.087 0.913 27 H 0.125 0.875 28 H 0.128 0.872 29 H 0.103 0.897 30 H 0.123 0.877 31 H 0.140 0.860 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.254 0.746 35 H 0.188 0.812 36 H 0.236 0.764 37 H 0.123 0.877 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 13.712 -30.029 6.784 33.701 hybrid contribution -0.197 -0.403 -1.363 1.435 sum 13.515 -30.432 5.421 33.736 Atomic orbital electron populations 1.70015 1.07232 1.29076 1.48978 1.25566 0.95314 1.02257 0.92840 0.85864 0.80651 0.79587 0.80251 1.18682 1.18109 1.16178 1.22426 0.90045 0.96727 1.58461 0.91977 1.84717 1.06677 1.05944 1.97572 1.23169 0.95611 0.99538 1.06923 1.19635 0.89259 0.81686 0.75151 1.90685 1.59522 1.42954 1.51390 1.50022 1.11487 1.03944 1.73099 1.23327 0.85692 0.89422 1.02253 1.23218 0.95189 0.92272 1.02268 1.21369 0.98413 0.82755 0.96480 1.45769 1.46588 1.04597 1.38420 1.17484 0.80681 0.82655 0.82119 1.90800 1.36719 1.84831 1.31908 1.21077 1.00590 0.95386 0.97804 1.21508 1.03742 0.90092 1.03502 1.27636 1.03415 1.08459 1.02261 1.80464 1.35324 0.86257 1.29541 1.72024 1.18185 1.31786 1.16643 1.23730 0.98027 0.77746 1.02582 0.91293 0.87459 0.87202 0.89698 0.87743 0.85967 0.89845 0.90220 0.74583 0.81171 0.76368 0.87691 0.88527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.91 13.97 21.65 0.30 -55.60 16 2 C 0.05 2.71 5.50 84.85 0.47 3.18 16 3 Si 0.91 45.38 27.74 68.60 1.90 47.28 16 4 H -0.26 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.24 -11.82 6.74 99.48 0.67 -11.15 16 7 C -0.53 -31.16 10.04 67.95 0.68 -30.47 16 8 H 0.06 3.85 8.03 -2.91 -0.02 3.83 16 9 S -0.18 -9.09 18.55 -56.49 -1.05 -10.14 16 10 C -0.10 -4.00 5.91 71.23 0.42 -3.58 16 11 C 0.55 20.19 8.07 87.65 0.71 20.89 16 12 O -0.57 -25.52 16.59 -3.02 -0.05 -25.57 16 13 N -0.65 -16.11 3.61 -835.96 -3.02 -19.13 16 14 C 0.12 1.97 8.41 86.49 0.73 2.70 16 15 C -0.11 -1.29 3.93 -10.14 -0.04 -1.33 16 16 C 0.13 1.57 5.51 86.38 0.48 2.04 16 17 N -0.70 -9.66 5.55 -466.10 -2.59 -12.25 16 18 C 0.59 11.02 7.81 86.74 0.68 11.70 16 19 O -0.56 -13.91 16.66 -3.95 -0.07 -13.98 16 20 C 0.02 0.39 6.66 42.13 0.28 0.67 16 21 C -0.16 -1.91 9.98 21.83 0.22 -1.69 16 22 C -0.27 -1.59 11.41 67.07 0.77 -0.82 16 23 S 0.53 3.61 23.20 -56.49 -1.31 2.30 16 24 N -0.55 -7.57 10.71 -75.32 -0.81 -8.38 16 25 C 0.10 1.55 8.18 86.44 0.71 2.26 16 26 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 27 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 28 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 29 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.10 1.48 8.10 -2.39 -0.02 1.46 16 31 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.08 0.99 7.88 -2.38 -0.02 0.97 16 34 H 0.42 4.77 7.94 -92.71 -0.74 4.04 16 35 H 0.17 2.03 7.99 -2.91 -0.02 2.00 16 36 H 0.22 -0.24 8.06 -2.91 -0.02 -0.27 16 37 H 0.11 1.37 7.92 -2.39 -0.02 1.35 16 38 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -82.77 362.01 -0.26 -83.04 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: 0.33 Total: 6.88 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 6.09 Total: 5.54 kcal Atomic # 7 Polarization: -89.24 SS G_CDS: -6.11 Total: -95.36 kcal Atomic # 8 Polarization: -39.43 SS G_CDS: -0.12 Total: -39.55 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.90 Total: 47.28 kcal Atomic # 16 Polarization: -5.48 SS G_CDS: -2.36 Total: -7.84 kcal Total: -82.77 -0.26 -83.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001745996336.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.272 kcal (2) G-P(sol) polarization free energy of solvation -82.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds