Wall clock time and date at job start Sat Apr 11 2020 06:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86802 * 120.00644 * 2 1 4 4 H 1.48496 * 109.47452 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47108 * 300.00473 * 3 2 1 6 6 H 1.48507 * 109.46788 * 60.00127 * 3 2 1 7 7 C 1.38798 * 119.99554 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00294 * 179.97438 * 7 2 1 9 9 S 1.76202 * 120.00313 * 359.97438 * 7 2 1 10 10 C 1.80999 * 100.00372 * 180.02562 * 9 7 2 11 11 C 1.50691 * 109.47090 * 180.02562 * 10 9 7 12 12 O 1.21285 * 120.00522 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99834 * 180.02562 * 11 10 9 14 14 C 1.46973 * 120.59383 * 180.02562 * 13 11 10 15 15 C 1.53368 * 108.63060 * 235.24613 * 14 13 11 16 16 N 1.46968 * 108.63843 * 310.57109 * 15 14 13 17 17 C 1.34770 * 120.59552 * 235.20564 * 16 15 14 18 18 O 1.21613 * 120.00516 * 5.60903 * 17 16 15 19 19 C 1.47263 * 119.99872 * 185.60054 * 17 16 15 20 20 N 1.30557 * 125.54505 * 221.70428 * 19 17 16 21 21 C 1.30706 * 115.90487 * 179.97438 * 20 19 17 22 22 C 1.34229 * 115.78522 * 0.26824 * 21 20 19 23 23 S 1.71076 * 109.09020 * 359.59724 * 22 21 20 24 24 C 1.46966 * 118.80592 * 55.48148 * 16 15 14 25 25 C 1.46962 * 120.59474 * 0.02562 * 13 11 10 26 26 H 0.97005 * 119.99226 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46859 * 59.99774 * 10 9 7 28 28 H 1.09004 * 109.47086 * 300.00531 * 10 9 7 29 29 H 1.08991 * 109.61310 * 115.49962 * 14 13 11 30 30 H 1.09002 * 109.74999 * 355.07198 * 14 13 11 31 31 H 1.09008 * 109.61077 * 190.82882 * 15 14 13 32 32 H 1.09005 * 109.61555 * 70.31847 * 15 14 13 33 33 H 1.08002 * 122.10505 * 180.02562 * 21 20 19 34 34 H 1.07997 * 125.45190 * 179.73285 * 22 21 20 35 35 H 1.09003 * 109.61301 * 64.26873 * 24 16 15 36 36 H 1.09004 * 109.60589 * 184.77792 * 24 16 15 37 37 H 1.09000 * 109.61454 * 244.49717 * 25 13 11 38 38 H 1.08995 * 109.60985 * 5.01526 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2505 1.6176 0.0000 4 1 3.7104 1.3462 -0.0006 5 1 1.8917 2.3964 -1.2124 6 1 1.8918 2.3963 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 16 1.1291 -2.7280 -0.0005 10 6 2.5156 -3.8916 -0.0005 11 6 1.9870 -5.3027 -0.0012 12 8 0.7907 -5.5023 -0.0021 13 7 2.8437 -6.3432 -0.0008 14 6 2.3425 -7.7248 -0.0019 15 6 2.9530 -8.4685 1.1924 16 7 4.4051 -8.2419 1.1945 17 6 5.2617 -9.2823 1.1958 18 8 4.8392 -10.4180 1.0923 19 6 6.7094 -9.0440 1.3223 20 7 7.6417 -9.6584 0.6457 21 6 8.8701 -9.2976 0.9089 22 6 9.0113 -8.3459 1.8449 23 16 7.4644 -7.8832 2.4101 24 6 4.9062 -6.8603 1.2012 25 6 4.2957 -6.1165 0.0009 26 1 -0.4849 0.8402 0.0004 27 1 3.1242 -3.7315 0.8894 28 1 3.1243 -3.7315 -0.8905 29 1 2.6342 -8.2190 -0.9285 30 1 1.2559 -7.7226 0.0851 31 1 2.7494 -9.5356 1.1018 32 1 2.5222 -8.0888 2.1189 33 1 9.7183 -9.7402 0.4077 34 1 9.9509 -7.9363 2.1849 35 1 4.6112 -6.3687 2.1283 36 1 5.9929 -6.8650 1.1164 37 1 4.7264 -6.4964 -0.9256 38 1 4.4993 -5.0496 0.0913 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001757877055.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:34 Heat of formation + Delta-G solvation = 2.624076 kcal Electronic energy + Delta-G solvation = -24327.930918 eV Core-core repulsion = 20617.662995 eV Total energy + Delta-G solvation = -3710.267923 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -40.95404 -39.99811 -39.09647 -37.05673 -34.24881 -32.48301 -32.38169 -30.91253 -29.53391 -28.08981 -26.41041 -25.53006 -24.22863 -23.30400 -21.67307 -19.99179 -19.63781 -18.48219 -17.72055 -17.18790 -16.86964 -16.44978 -15.92122 -15.82820 -15.66415 -15.49552 -14.85467 -14.68019 -14.38963 -14.17293 -14.04274 -13.76634 -13.38104 -13.32308 -12.93085 -12.60525 -12.12927 -12.00370 -11.91050 -11.85757 -11.59388 -11.11570 -11.07374 -10.89588 -10.80151 -10.18023 -10.15016 -9.85495 -9.58534 -9.47959 -9.33757 -9.12574 -8.53497 -8.28937 -6.56560 -6.27038 -3.98214 -0.20189 0.57006 1.09869 1.92679 2.12634 2.64258 2.84836 2.92586 3.17642 3.20913 3.26830 3.48851 3.61538 4.14349 4.30308 4.38841 4.44354 4.60383 4.72512 4.78861 4.82458 4.92531 5.00459 5.08560 5.14415 5.27890 5.39742 5.47838 5.49842 5.60611 5.69442 5.77552 5.96180 6.00586 6.40344 6.69200 7.07799 7.37335 7.53563 7.54407 8.29706 8.41331 9.18492 10.80408 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.016068 B = 0.002633 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.154218 B =10632.106891 C =12082.880792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.536 3.464 12 O -0.511 6.511 13 N -0.622 5.622 14 C 0.100 3.900 15 C 0.101 3.899 16 N -0.600 5.600 17 C 0.601 3.399 18 O -0.502 6.502 19 C -0.006 4.006 20 N -0.405 5.405 21 C 0.028 3.972 22 C -0.270 4.270 23 S 0.200 5.800 24 C 0.078 3.922 25 C 0.098 3.902 26 H 0.268 0.732 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.071 0.929 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.082 0.918 33 H 0.181 0.819 34 H 0.186 0.814 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.598 -16.019 4.826 25.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.303 4.303 11 C 0.325 3.675 12 O -0.384 6.384 13 N -0.359 5.359 14 C -0.024 4.024 15 C -0.021 4.021 16 N -0.335 5.335 17 C 0.384 3.616 18 O -0.376 6.376 19 C -0.282 4.282 20 N -0.120 5.120 21 C -0.128 4.128 22 C -0.411 4.411 23 S 0.454 5.546 24 C -0.047 4.047 25 C -0.027 4.027 26 H 0.078 0.922 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.090 0.910 30 H 0.128 0.872 31 H 0.126 0.874 32 H 0.101 0.899 33 H 0.198 0.802 34 H 0.204 0.796 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.094 0.906 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 15.857 -16.519 5.116 23.463 hybrid contribution 3.181 0.989 -0.415 3.357 sum 19.038 -15.531 4.701 25.015 Atomic orbital electron populations 1.70026 1.05968 1.27412 1.46778 1.24998 0.95028 0.99064 0.94497 0.86116 0.79553 0.81871 0.77940 1.19603 1.20563 1.20553 1.22882 0.94888 0.91549 1.59030 0.90859 1.85461 1.04765 0.96379 1.96698 1.23566 1.06701 0.95276 1.04761 1.20389 0.86201 0.86134 0.74809 1.90708 1.15064 1.85090 1.47565 1.48068 1.05977 1.05875 1.76000 1.21920 1.01511 0.81319 0.97644 1.22190 0.77376 1.02894 0.99622 1.47858 1.06995 1.05722 1.72928 1.16725 0.82664 0.84965 0.77291 1.90856 1.76998 1.21586 1.48122 1.27458 0.98564 1.00329 1.01880 1.66687 0.99654 1.22713 1.22981 1.21868 0.94312 0.97871 0.98717 1.26913 1.04624 1.05100 1.04440 1.84180 0.96736 1.34874 1.38833 1.22684 0.99760 0.81515 1.00709 1.22136 0.80782 1.02074 0.97670 0.92184 0.89139 0.89150 0.91031 0.87171 0.87376 0.89940 0.80184 0.79624 0.89202 0.88937 0.90638 0.87507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.51 13.22 55.49 0.73 -24.77 16 2 C 0.07 2.03 5.49 -17.43 -0.10 1.94 16 3 Si 0.92 20.71 29.55 -169.99 -5.02 15.69 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -14.63 9.50 30.94 0.29 -14.34 16 8 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 9 S -0.06 -1.55 20.57 -107.50 -2.21 -3.77 16 10 C -0.15 -2.85 4.50 36.00 0.16 -2.69 16 11 C 0.54 9.37 7.72 -10.99 -0.08 9.29 16 12 O -0.51 -10.94 15.27 5.55 0.08 -10.85 16 13 N -0.62 -7.96 2.95 -172.20 -0.51 -8.46 16 14 C 0.10 1.12 6.59 -3.59 -0.02 1.10 16 15 C 0.10 1.00 6.60 -3.60 -0.02 0.97 16 16 N -0.60 -5.91 2.94 -173.52 -0.51 -6.42 16 17 C 0.60 7.07 7.66 -12.59 -0.10 6.97 16 18 O -0.50 -7.57 16.52 5.27 0.09 -7.49 16 19 C -0.01 -0.06 6.42 -14.43 -0.09 -0.15 16 20 N -0.40 -4.43 10.65 -11.50 -0.12 -4.56 16 21 C 0.03 0.21 11.24 -19.44 -0.22 -0.01 16 22 C -0.27 -1.50 11.09 29.32 0.33 -1.17 16 23 S 0.20 1.28 20.24 -107.50 -2.18 -0.89 16 24 C 0.08 0.62 5.90 -3.35 -0.02 0.60 16 25 C 0.10 0.92 6.52 -3.35 -0.02 0.90 16 26 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.09 1.51 7.72 -51.92 -0.40 1.11 16 28 H 0.09 1.56 7.91 -51.91 -0.41 1.14 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.11 1.36 7.00 -51.93 -0.36 1.00 16 31 H 0.11 1.06 6.99 -51.92 -0.36 0.70 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.18 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.19 0.47 8.06 -52.49 -0.42 0.04 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 0.61 4.45 -37.11 -0.17 0.44 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.11 0.93 5.91 -51.93 -0.31 0.63 16 LS Contribution 347.25 15.07 5.23 5.23 Total: -1.00 -36.50 347.25 -8.40 -44.90 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -4.09 Total: -2.03 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: 0.10 Total: 3.42 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: -0.41 Total: -44.21 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: 0.17 Total: -18.34 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: -0.27 SS G_CDS: -4.39 Total: -4.66 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.50 -8.40 -44.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001757877055.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.527 kcal (2) G-P(sol) polarization free energy of solvation -36.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds