Wall clock time and date at job start Sat Apr 11 2020 06:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86806 * 119.99963 * 2 1 4 4 H 1.48502 * 109.47099 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46964 * 300.00017 * 3 2 1 6 6 H 1.48502 * 109.46801 * 59.99757 * 3 2 1 7 7 C 1.38800 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00169 * 180.02562 * 7 2 1 9 9 S 1.76194 * 119.99918 * 0.02562 * 7 2 1 10 10 C 1.81000 * 100.00072 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47467 * 180.02562 * 10 9 7 12 12 O 1.21289 * 119.99700 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00483 * 179.97438 * 11 10 9 14 14 C 1.47743 * 125.81887 * 359.90665 * 13 11 10 15 15 C 1.54909 * 104.83995 * 155.82587 * 14 13 11 16 16 C 1.55159 * 101.57990 * 37.09908 * 15 14 13 17 17 H 1.08999 * 110.72303 * 82.85766 * 16 15 14 18 18 N 1.46501 * 110.71827 * 206.13106 * 16 15 14 19 19 C 1.34776 * 119.99901 * 199.96861 * 18 16 15 20 20 O 1.21630 * 119.99892 * 0.02562 * 19 18 16 21 21 C 1.47100 * 119.99958 * 179.97438 * 19 18 16 22 22 C 1.38392 * 127.99541 * 180.02562 * 21 19 18 23 23 C 1.37577 * 111.26124 * 180.02562 * 22 21 19 24 24 N 1.29562 * 117.94886 * 0.02562 * 23 22 21 25 25 S 1.56310 * 110.38035 * 359.69460 * 24 23 22 26 26 C 1.47020 * 125.64983 * 179.97438 * 13 11 10 27 27 H 0.96999 * 120.00373 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47228 * 60.00102 * 10 9 7 29 29 H 1.08999 * 109.46922 * 300.00118 * 10 9 7 30 30 H 1.09003 * 110.29227 * 37.02448 * 14 13 11 31 31 H 1.08996 * 110.53057 * 274.75660 * 14 13 11 32 32 H 1.08994 * 111.00889 * 279.01887 * 15 14 13 33 33 H 1.09001 * 111.03628 * 155.18095 * 15 14 13 34 34 H 0.97002 * 119.99899 * 19.97934 * 18 16 15 35 35 H 1.07992 * 124.36796 * 359.97438 * 22 21 19 36 36 H 1.08001 * 121.03112 * 180.02562 * 23 22 21 37 37 H 1.09002 * 109.88367 * 61.60808 * 26 13 11 38 38 H 1.09000 * 109.88319 * 300.59426 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9874 -5.3027 -0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8441 -6.3431 -0.0007 14 6 4.3185 -6.2491 -0.0028 15 6 4.8023 -7.5868 0.6104 16 6 3.7710 -8.5882 0.0264 17 1 4.0564 -8.8925 -0.9806 18 7 3.6286 -9.7548 0.9011 19 6 3.1157 -10.9026 0.4154 20 8 2.7716 -10.9701 -0.7493 21 6 2.9733 -12.0741 1.2935 22 6 2.4730 -13.3238 0.9722 23 6 2.4966 -14.1654 2.0603 24 7 2.9581 -13.7002 3.1779 25 16 3.4076 -12.2132 3.0044 26 6 2.4665 -7.7640 -0.0009 27 1 -0.4851 0.8400 -0.0004 28 1 3.1244 -3.7314 0.8906 29 1 3.1244 -3.7313 -0.8894 30 1 4.6447 -5.4101 0.6119 31 1 4.6932 -6.1408 -1.0206 32 1 4.7479 -7.5601 1.6987 33 1 5.8120 -7.8274 0.2776 34 1 3.9032 -9.7010 1.8299 35 1 2.1101 -13.6021 -0.0061 36 1 2.1414 -15.1826 1.9852 37 1 1.8998 -7.9970 -0.9024 38 1 1.8676 -7.9885 0.8817 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001758235965.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:37 Heat of formation + Delta-G solvation = -16.705352 kcal Electronic energy + Delta-G solvation = -23446.996239 eV Core-core repulsion = 19735.890130 eV Total energy + Delta-G solvation = -3711.106110 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.64887 -39.79432 -39.11368 -37.30608 -34.61635 -32.44587 -32.22324 -30.99034 -29.77000 -28.18505 -26.38502 -25.49501 -23.81633 -22.70941 -21.32680 -20.58156 -19.46329 -19.07221 -17.83084 -17.41152 -17.07198 -16.58046 -15.94629 -15.66723 -15.34254 -15.07681 -14.81942 -14.64791 -14.28714 -14.06494 -13.91592 -13.78797 -13.57159 -12.95565 -12.60701 -12.55924 -12.28246 -11.99869 -11.85456 -11.82488 -11.31988 -11.22445 -11.08251 -11.03173 -10.77728 -10.58691 -10.25557 -9.84118 -9.73286 -9.42286 -9.36657 -9.08938 -8.58283 -8.24486 -6.52079 -6.23117 -3.93993 -0.24984 0.72514 1.32462 1.68936 2.36330 2.59448 2.92867 3.03278 3.20470 3.25068 3.30042 3.58423 3.95688 4.16624 4.19093 4.24801 4.45122 4.55813 4.62406 4.86066 5.01571 5.02552 5.12117 5.13010 5.29052 5.35537 5.39857 5.50389 5.58117 5.62997 5.75677 5.88290 5.93222 5.96796 6.10174 6.32881 6.85271 7.57570 7.57981 7.59507 8.33827 8.51541 9.22173 10.84365 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.029929 B = 0.001863 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.325563 B =15029.054439 C =15137.313536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.146 4.146 11 C 0.549 3.451 12 O -0.512 6.512 13 N -0.627 5.627 14 C 0.103 3.897 15 C -0.139 4.139 16 C 0.136 3.864 17 H 0.111 0.889 18 N -0.714 5.714 19 C 0.599 3.401 20 O -0.514 6.514 21 C -0.271 4.271 22 C -0.106 4.106 23 C 0.059 3.941 24 N -0.516 5.516 25 S 0.420 5.580 26 C 0.098 3.902 27 H 0.268 0.732 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.402 0.598 35 H 0.177 0.823 36 H 0.186 0.814 37 H 0.075 0.925 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.477 -26.343 4.571 29.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.092 0.908 9 S 0.166 5.834 10 C -0.297 4.297 11 C 0.337 3.663 12 O -0.386 6.386 13 N -0.365 5.365 14 C -0.021 4.021 15 C -0.177 4.177 16 C 0.031 3.969 17 H 0.129 0.871 18 N -0.366 5.366 19 C 0.384 3.616 20 O -0.389 6.389 21 C -0.405 4.405 22 C -0.141 4.141 23 C -0.133 4.133 24 N -0.345 5.345 25 S 0.575 5.425 26 C -0.026 4.026 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.237 0.763 35 H 0.195 0.805 36 H 0.203 0.797 37 H 0.093 0.907 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.914 -26.094 5.764 29.258 hybrid contribution 1.357 0.495 -1.136 1.837 sum 13.270 -25.599 4.628 29.203 Atomic orbital electron populations 1.70024 1.05962 1.27378 1.46859 1.25001 0.95032 0.99056 0.94538 0.86110 0.79564 0.81861 0.77912 1.19604 1.20554 1.20573 1.22894 0.94923 0.91559 1.58920 0.90845 1.85446 1.04901 0.96374 1.96708 1.23504 1.06527 0.94793 1.04838 1.20066 0.85658 0.85379 0.75179 1.90726 1.14956 1.85060 1.47846 1.48518 1.06579 1.05275 1.76147 1.22324 0.80474 0.97766 1.01527 1.23107 0.99024 0.93939 1.01679 1.22058 0.95084 0.84179 0.95561 0.87109 1.45779 1.64959 1.11303 1.14565 1.16734 0.77416 0.81170 0.86297 1.90873 1.48308 1.83290 1.16468 1.26824 1.11822 0.99561 1.02311 1.22178 0.99315 0.90787 1.01853 1.22341 1.01247 1.03264 0.86482 1.72247 1.20278 1.12005 1.30007 1.81658 1.51626 1.07137 1.02115 1.22219 0.96389 0.80840 1.03181 0.92210 0.89237 0.89184 0.89569 0.90690 0.89647 0.88742 0.76297 0.80527 0.79725 0.90677 0.91165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.07 13.22 55.49 0.73 -25.33 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.22 29.55 -169.99 -5.02 16.20 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.53 -15.10 9.50 30.94 0.29 -14.80 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 10 C -0.15 -2.93 5.17 36.00 0.19 -2.74 16 11 C 0.55 10.50 7.87 -10.99 -0.09 10.41 16 12 O -0.51 -12.02 16.19 5.55 0.09 -11.93 16 13 N -0.63 -8.68 3.34 -170.26 -0.57 -9.25 16 14 C 0.10 0.93 6.71 -2.35 -0.02 0.92 16 15 C -0.14 -0.83 6.69 -24.58 -0.16 -1.00 16 16 C 0.14 1.12 3.23 -66.09 -0.21 0.91 16 17 H 0.11 0.96 7.70 -51.93 -0.40 0.56 16 18 N -0.71 -5.13 5.13 -53.21 -0.27 -5.40 16 19 C 0.60 5.61 7.80 -12.67 -0.10 5.51 16 20 O -0.51 -6.66 16.69 5.25 0.09 -6.57 16 21 C -0.27 -2.06 6.76 -35.93 -0.24 -2.30 16 22 C -0.11 -0.70 10.40 -39.77 -0.41 -1.11 16 23 C 0.06 0.36 11.15 -18.75 -0.21 0.15 16 24 N -0.52 -4.02 11.29 21.64 0.24 -3.78 16 25 S 0.42 2.56 22.81 -107.50 -2.45 0.11 16 26 C 0.10 1.21 6.61 -3.07 -0.02 1.19 16 27 H 0.27 7.46 8.31 -40.82 -0.34 7.13 16 28 H 0.09 1.63 7.86 -51.91 -0.41 1.22 16 29 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 30 H 0.09 0.75 7.50 -51.93 -0.39 0.36 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.43 8.00 -51.93 -0.42 0.02 16 33 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.40 1.86 7.90 -40.82 -0.32 1.54 16 35 H 0.18 0.96 8.06 -52.49 -0.42 0.53 16 36 H 0.19 0.58 8.06 -52.49 -0.42 0.16 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.07 0.91 8.03 -51.93 -0.42 0.50 16 LS Contribution 359.29 15.07 5.41 5.41 Total: -1.00 -37.84 359.29 -9.47 -47.32 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -4.43 Total: -1.99 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -1.08 Total: -0.91 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: 0.14 Total: -43.77 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: 0.18 Total: -18.50 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -4.66 Total: -3.76 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -37.84 -9.47 -47.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758235965.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.612 kcal (2) G-P(sol) polarization free energy of solvation -37.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds