Wall clock time and date at job start Sat Apr 11 2020 06:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86806 * 119.99963 * 2 1 4 4 H 1.48502 * 109.47099 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46964 * 300.00017 * 3 2 1 6 6 H 1.48502 * 109.46801 * 59.99757 * 3 2 1 7 7 C 1.38800 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00169 * 180.02562 * 7 2 1 9 9 S 1.76194 * 119.99918 * 0.02562 * 7 2 1 10 10 C 1.81000 * 100.00072 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47467 * 180.02562 * 10 9 7 12 12 O 1.21289 * 119.99700 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00483 * 179.97438 * 11 10 9 14 14 C 1.47743 * 125.81887 * 359.90665 * 13 11 10 15 15 C 1.54909 * 104.83995 * 155.82587 * 14 13 11 16 16 C 1.55159 * 101.57990 * 37.09908 * 15 14 13 17 17 H 1.08999 * 110.72303 * 82.85766 * 16 15 14 18 18 N 1.46501 * 110.71827 * 206.13106 * 16 15 14 19 19 C 1.34776 * 119.99901 * 199.96861 * 18 16 15 20 20 O 1.21630 * 119.99892 * 0.02562 * 19 18 16 21 21 C 1.47100 * 119.99958 * 179.97438 * 19 18 16 22 22 C 1.38392 * 127.99541 * 180.02562 * 21 19 18 23 23 C 1.37577 * 111.26124 * 180.02562 * 22 21 19 24 24 N 1.29562 * 117.94886 * 0.02562 * 23 22 21 25 25 S 1.56310 * 110.38035 * 359.69460 * 24 23 22 26 26 C 1.47020 * 125.64983 * 179.97438 * 13 11 10 27 27 H 0.96999 * 120.00373 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47228 * 60.00102 * 10 9 7 29 29 H 1.08999 * 109.46922 * 300.00118 * 10 9 7 30 30 H 1.09003 * 110.29227 * 37.02448 * 14 13 11 31 31 H 1.08996 * 110.53057 * 274.75660 * 14 13 11 32 32 H 1.08994 * 111.00889 * 279.01887 * 15 14 13 33 33 H 1.09001 * 111.03628 * 155.18095 * 15 14 13 34 34 H 0.97002 * 119.99899 * 19.97934 * 18 16 15 35 35 H 1.07992 * 124.36796 * 359.97438 * 22 21 19 36 36 H 1.08001 * 121.03112 * 180.02562 * 23 22 21 37 37 H 1.09002 * 109.88367 * 61.60808 * 26 13 11 38 38 H 1.09000 * 109.88319 * 300.59426 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9874 -5.3027 -0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8441 -6.3431 -0.0007 14 6 4.3185 -6.2491 -0.0028 15 6 4.8023 -7.5868 0.6104 16 6 3.7710 -8.5882 0.0264 17 1 4.0564 -8.8925 -0.9806 18 7 3.6286 -9.7548 0.9011 19 6 3.1157 -10.9026 0.4154 20 8 2.7716 -10.9701 -0.7493 21 6 2.9733 -12.0741 1.2935 22 6 2.4730 -13.3238 0.9722 23 6 2.4966 -14.1654 2.0603 24 7 2.9581 -13.7002 3.1779 25 16 3.4076 -12.2132 3.0044 26 6 2.4665 -7.7640 -0.0009 27 1 -0.4851 0.8400 -0.0004 28 1 3.1244 -3.7314 0.8906 29 1 3.1244 -3.7313 -0.8894 30 1 4.6447 -5.4101 0.6119 31 1 4.6932 -6.1408 -1.0206 32 1 4.7479 -7.5601 1.6987 33 1 5.8120 -7.8274 0.2776 34 1 3.9032 -9.7010 1.8299 35 1 2.1101 -13.6021 -0.0061 36 1 2.1414 -15.1826 1.9852 37 1 1.8998 -7.9970 -0.9024 38 1 1.8676 -7.9885 0.8817 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001758235965.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:37 Heat of formation + Delta-G solvation = -45.201124 kcal Electronic energy + Delta-G solvation = -23448.231909 eV Core-core repulsion = 19735.890130 eV Total energy + Delta-G solvation = -3712.341779 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.48818 -40.69459 -39.91116 -38.44400 -35.51576 -34.58355 -32.93063 -31.98853 -30.88994 -29.23591 -27.68141 -26.99570 -24.74907 -23.34548 -22.09458 -21.19944 -20.72134 -19.80701 -19.51505 -18.29518 -17.85241 -17.80369 -16.89522 -16.85777 -16.64209 -16.31859 -16.03685 -15.68252 -15.48653 -15.15391 -14.82096 -14.54250 -14.46635 -14.26110 -14.00654 -13.69793 -13.35358 -13.15351 -12.94851 -12.90594 -12.72777 -12.59568 -12.39411 -11.90277 -11.79785 -11.70552 -11.35836 -11.15638 -11.05017 -10.85633 -10.39048 -10.26844 -9.83016 -9.77137 -8.68267 -8.34331 -6.13211 -0.80850 0.20996 0.84002 1.16169 1.22058 1.42576 1.43414 1.53203 1.56786 1.75443 1.92902 2.16011 2.27514 3.00121 3.20579 3.35154 3.48038 3.58387 3.87471 3.98133 4.00327 4.06456 4.14011 4.24713 4.32129 4.45143 4.62892 4.65899 4.72489 4.76744 4.85566 4.95954 5.01875 5.25874 5.30036 5.42705 5.46080 6.20522 6.23815 6.33291 6.91558 7.06818 7.07838 8.75243 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.029929 B = 0.001863 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.325563 B =15029.054439 C =15137.313536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.011 3.989 3 Si 1.001 2.999 4 H -0.254 1.254 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.542 4.542 8 H 0.086 0.914 9 S -0.157 6.157 10 C -0.117 4.117 11 C 0.545 3.455 12 O -0.570 6.570 13 N -0.616 5.616 14 C 0.088 3.912 15 C -0.120 4.120 16 C 0.146 3.854 17 H 0.110 0.890 18 N -0.700 5.700 19 C 0.600 3.400 20 O -0.557 6.557 21 C -0.293 4.293 22 C -0.106 4.106 23 C 0.061 3.939 24 N -0.544 5.544 25 S 0.459 5.541 26 C 0.095 3.905 27 H 0.271 0.729 28 H 0.113 0.887 29 H 0.109 0.891 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.131 0.869 34 H 0.417 0.583 35 H 0.185 0.815 36 H 0.212 0.788 37 H 0.049 0.951 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.075 -26.877 5.469 32.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.822 3.178 4 H -0.177 1.177 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.690 4.690 8 H 0.104 0.896 9 S 0.070 5.930 10 C -0.268 4.268 11 C 0.333 3.667 12 O -0.449 6.449 13 N -0.351 5.351 14 C -0.033 4.033 15 C -0.158 4.158 16 C 0.041 3.959 17 H 0.128 0.872 18 N -0.353 5.353 19 C 0.385 3.615 20 O -0.436 6.436 21 C -0.427 4.427 22 C -0.142 4.142 23 C -0.130 4.130 24 N -0.375 5.375 25 S 0.614 5.386 26 C -0.030 4.030 27 H 0.080 0.920 28 H 0.131 0.869 29 H 0.128 0.872 30 H 0.116 0.884 31 H 0.110 0.890 32 H 0.120 0.880 33 H 0.149 0.851 34 H 0.255 0.745 35 H 0.202 0.798 36 H 0.229 0.771 37 H 0.067 0.933 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 15.596 -26.660 6.703 31.605 hybrid contribution 0.272 0.492 -1.392 1.501 sum 15.868 -26.167 5.311 31.060 Atomic orbital electron populations 1.70196 1.08071 1.28552 1.48106 1.26167 0.95973 1.03439 0.93756 0.84877 0.78731 0.76165 0.77987 1.17698 1.20092 1.19995 1.23227 0.95408 0.91669 1.58714 0.89590 1.85685 1.10772 0.99514 1.97052 1.23288 1.03351 0.93344 1.06795 1.19900 0.85383 0.86116 0.75287 1.90701 1.17427 1.85817 1.50960 1.48424 1.08517 1.04752 1.73431 1.22802 0.76970 1.00231 1.03319 1.23140 0.99645 0.90548 1.02481 1.21933 0.93352 0.84339 0.96317 0.87165 1.45657 1.64049 1.10351 1.15217 1.16987 0.76621 0.81930 0.85914 1.90852 1.50275 1.84111 1.18355 1.26780 1.13191 0.99378 1.03356 1.22405 0.98756 0.90593 1.02482 1.22659 1.00404 1.04279 0.85639 1.72209 1.21238 1.13147 1.30898 1.81412 1.50643 1.06210 1.00299 1.22329 0.98624 0.80544 1.01465 0.92028 0.86854 0.87238 0.88360 0.89043 0.87960 0.85087 0.74547 0.79823 0.77143 0.93259 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.18 13.22 21.65 0.29 -55.89 16 2 C 0.01 0.63 5.49 84.86 0.47 1.10 16 3 Si 1.00 43.14 29.55 68.60 2.03 45.17 16 4 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 5 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.54 -30.69 9.50 67.95 0.65 -30.04 16 8 H 0.09 4.47 7.80 -2.91 -0.02 4.44 16 9 S -0.16 -8.80 20.57 -56.49 -1.16 -9.96 16 10 C -0.12 -4.62 5.17 71.23 0.37 -4.25 16 11 C 0.54 21.04 7.87 87.66 0.69 21.73 16 12 O -0.57 -28.08 16.19 -3.06 -0.05 -28.13 16 13 N -0.62 -16.46 3.34 -810.98 -2.71 -19.17 16 14 C 0.09 1.31 6.71 86.79 0.58 1.89 16 15 C -0.12 -0.93 6.69 31.99 0.21 -0.72 16 16 C 0.15 2.12 3.23 46.18 0.15 2.26 16 17 H 0.11 1.72 7.70 -2.39 -0.02 1.70 16 18 N -0.70 -8.81 5.13 -440.49 -2.26 -11.06 16 19 C 0.60 10.79 7.80 86.57 0.68 11.47 16 20 O -0.56 -14.57 16.69 -4.13 -0.07 -14.64 16 21 C -0.29 -4.15 6.76 24.63 0.17 -3.98 16 22 C -0.11 -1.30 10.40 22.15 0.23 -1.07 16 23 C 0.06 0.65 11.15 84.87 0.95 1.59 16 24 N -0.54 -7.59 11.29 -85.44 -0.96 -8.56 16 25 S 0.46 4.81 22.81 -56.49 -1.29 3.52 16 26 C 0.09 2.32 6.61 86.73 0.57 2.90 16 27 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 28 H 0.11 3.92 7.86 -2.39 -0.02 3.90 16 29 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 30 H 0.10 1.30 7.50 -2.39 -0.02 1.28 16 31 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.10 0.53 8.00 -2.39 -0.02 0.51 16 33 H 0.13 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.42 2.76 7.90 -92.71 -0.73 2.03 16 35 H 0.18 1.87 8.06 -2.91 -0.02 1.85 16 36 H 0.21 0.88 8.06 -2.91 -0.02 0.85 16 37 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.06 1.58 8.03 -2.39 -0.02 1.56 16 Total: -1.00 -87.33 359.29 -0.10 -87.43 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: 0.38 Total: 8.40 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: 5.71 Total: 2.88 kcal Atomic # 7 Polarization: -89.04 SS G_CDS: -5.64 Total: -94.68 kcal Atomic # 8 Polarization: -42.64 SS G_CDS: -0.12 Total: -42.76 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: -4.00 SS G_CDS: -2.45 Total: -6.45 kcal Total: -87.33 -0.10 -87.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758235965.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.229 kcal (2) G-P(sol) polarization free energy of solvation -87.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds