Wall clock time and date at job start Sat Apr 11 2020 06:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86801 * 119.99841 * 2 1 4 4 H 1.48494 * 109.47644 * 270.00621 * 3 2 1 5 5 H 1.48506 * 109.47143 * 30.00567 * 3 2 1 6 6 H 1.48501 * 109.47120 * 150.00282 * 3 2 1 7 7 C 1.38798 * 120.00298 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99590 * 359.71971 * 7 2 1 9 9 S 1.76199 * 120.00102 * 179.97438 * 7 2 1 10 10 C 1.80998 * 100.00013 * 179.72368 * 9 7 2 11 11 C 1.50698 * 109.47116 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99994 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00022 * 179.97438 * 11 10 9 14 14 C 1.47067 * 136.05812 * 359.63749 * 13 11 10 15 15 C 1.53755 * 87.89102 * 152.95871 * 14 13 11 16 16 N 1.46497 * 114.57266 * 272.66277 * 15 14 13 17 17 C 1.34779 * 120.00099 * 248.66915 * 16 15 14 18 18 O 1.21284 * 119.99488 * 0.02562 * 17 16 15 19 19 C 1.50695 * 120.00007 * 179.97438 * 17 16 15 20 20 C 1.50700 * 109.47007 * 180.02562 * 19 17 16 21 21 C 1.33634 * 126.04079 * 89.71623 * 20 19 17 22 22 N 1.31784 * 114.50421 * 179.78933 * 21 20 19 23 23 C 1.29026 * 117.12250 * 0.52393 * 22 21 20 24 24 S 1.70971 * 110.16672 * 359.71323 * 23 22 21 25 25 C 1.47065 * 136.05752 * 180.02562 * 13 11 10 26 26 H 0.96995 * 120.00138 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47163 * 300.00283 * 10 9 7 28 28 H 1.08999 * 109.47347 * 59.99806 * 10 9 7 29 29 H 1.09010 * 113.46411 * 267.68953 * 14 13 11 30 30 H 1.08997 * 113.47100 * 38.12526 * 14 13 11 31 31 H 1.09000 * 114.08403 * 139.77717 * 15 14 13 32 32 H 0.97002 * 120.00113 * 68.66897 * 16 15 14 33 33 H 1.08990 * 109.47543 * 300.00143 * 19 17 16 34 34 H 1.09004 * 109.47066 * 60.00563 * 19 17 16 35 35 H 1.08005 * 122.74527 * 359.97438 * 21 20 19 36 36 H 1.08003 * 124.91418 * 179.68132 * 23 22 21 37 37 H 1.09001 * 113.46952 * 321.86856 * 25 13 11 38 38 H 1.09004 * 113.46955 * 92.25117 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4478 2.6527 0.7002 6 1 3.5479 1.4402 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1372 0.0036 9 16 3.7724 -1.2019 -0.0012 10 6 4.0867 -2.9844 0.0069 11 6 5.5732 -3.2323 0.0068 12 8 6.3441 -2.2961 0.0022 13 7 6.0459 -4.4944 0.0128 14 6 5.4616 -5.8440 0.0267 15 6 6.7351 -6.3410 -0.6769 16 7 6.6992 -6.2486 -2.1385 17 6 6.6540 -7.3707 -2.8838 18 8 6.6427 -8.4568 -2.3443 19 6 6.6164 -7.2756 -4.3873 20 6 6.5688 -8.6615 -4.9772 21 6 5.4641 -9.3618 -5.2514 22 7 5.6866 -10.5531 -5.7691 23 6 6.9177 -10.9009 -5.9371 24 16 7.9599 -9.6481 -5.4200 25 6 7.3730 -5.1282 0.0153 26 1 -0.4850 0.8400 0.0004 27 1 3.6441 -3.4274 0.8990 28 1 3.6435 -3.4356 -0.8809 29 1 5.3329 -6.2510 1.0298 30 1 4.5632 -5.9344 -0.5838 31 1 7.0967 -7.3034 -0.3147 32 1 6.7078 -5.3798 -2.5700 33 1 5.7305 -6.7199 -4.6942 34 1 7.5093 -6.7602 -4.7412 35 1 4.4703 -8.9812 -5.0669 36 1 7.2427 -11.8467 -6.3449 37 1 8.1033 -4.6086 -0.6050 38 1 7.7483 -5.3457 1.0153 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759202614.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:40 Heat of formation + Delta-G solvation = 21.162034 kcal Electronic energy + Delta-G solvation = -23411.063817 eV Core-core repulsion = 19701.599761 eV Total energy + Delta-G solvation = -3709.464057 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.01572 -40.08462 -39.25774 -37.69707 -34.06173 -33.16484 -32.48798 -30.61520 -28.58254 -27.62417 -26.22790 -25.64188 -25.03935 -22.36481 -21.13475 -20.38753 -19.23205 -18.46832 -17.88941 -17.61685 -16.87640 -16.53294 -16.22411 -15.61205 -15.47340 -15.18403 -14.95737 -14.75310 -14.28036 -14.18200 -13.98403 -13.68810 -13.39869 -13.19265 -13.11115 -12.85643 -12.69694 -12.26810 -12.11619 -11.61705 -11.37111 -11.28195 -11.05407 -10.67502 -10.44884 -10.01021 -9.90930 -9.68922 -9.62341 -9.47379 -9.28219 -9.05398 -8.83923 -8.57129 -6.98781 -6.33489 -4.06327 0.31780 0.98537 1.37264 2.15272 2.41928 2.47753 2.72750 2.83596 3.06451 3.28705 3.45944 3.51751 3.93983 3.95586 4.20004 4.27707 4.36689 4.43881 4.56834 4.63570 4.89221 4.89800 4.95867 4.96702 5.05449 5.14336 5.28299 5.29809 5.33117 5.40136 5.68165 5.75246 5.78442 5.94196 6.05526 7.01764 7.34739 7.62255 7.75448 7.89425 8.29864 8.36971 9.12265 10.75668 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.017634 B = 0.002084 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.426015 B =13435.346387 C =14319.893999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.116 4.116 11 C 0.561 3.439 12 O -0.515 6.515 13 N -0.653 5.653 14 C 0.086 3.914 15 C 0.107 3.893 16 N -0.707 5.707 17 C 0.520 3.480 18 O -0.526 6.526 19 C -0.065 4.065 20 C -0.202 4.202 21 C 0.048 3.952 22 N -0.470 5.470 23 C 0.017 3.983 24 S 0.132 5.868 25 C 0.098 3.902 26 H 0.271 0.729 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.126 0.874 32 H 0.408 0.592 33 H 0.121 0.879 34 H 0.110 0.890 35 H 0.175 0.825 36 H 0.199 0.801 37 H 0.082 0.918 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.828 -20.412 -9.372 28.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.266 4.266 11 C 0.351 3.649 12 O -0.389 6.389 13 N -0.393 5.393 14 C -0.038 4.038 15 C 0.000 4.000 16 N -0.359 5.359 17 C 0.305 3.695 18 O -0.401 6.401 19 C -0.107 4.107 20 C -0.324 4.324 21 C -0.104 4.104 22 N -0.183 5.183 23 C -0.280 4.280 24 S 0.385 5.615 25 C -0.026 4.026 26 H 0.081 0.919 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.116 0.884 30 H 0.102 0.898 31 H 0.144 0.856 32 H 0.243 0.757 33 H 0.139 0.861 34 H 0.128 0.872 35 H 0.192 0.808 36 H 0.215 0.785 37 H 0.101 0.899 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 19.354 -19.769 -9.148 29.139 hybrid contribution -1.803 0.395 0.078 1.848 sum 17.551 -19.374 -9.070 27.670 Atomic orbital electron populations 1.69935 1.05900 1.27827 1.47870 1.24717 0.94464 0.98977 0.93151 0.86735 0.81888 0.83279 0.79947 1.19178 1.19873 1.15942 1.22289 0.88102 0.97557 1.58991 0.89380 1.84787 1.09499 0.99767 1.97441 1.23212 0.93367 1.04292 1.05749 1.19923 0.90432 0.79819 0.74774 1.90722 1.58954 1.40747 1.48487 1.49749 1.09328 1.04502 1.75701 1.23582 0.98389 0.80585 1.01278 1.22254 0.97168 1.00041 0.80517 1.45538 1.75259 1.09354 1.05750 1.20471 0.75785 0.84106 0.89114 1.90750 1.48323 1.27302 1.73754 1.20037 1.06501 0.92579 0.91614 1.25254 0.95649 1.01506 1.09963 1.21739 0.99891 0.89291 0.99462 1.66318 1.20510 1.16252 1.15208 1.28379 0.91080 1.04234 1.04336 1.83968 1.11641 1.09618 1.56297 1.23290 0.88064 0.90159 1.01065 0.91879 0.88543 0.88657 0.88448 0.89768 0.85605 0.75709 0.86150 0.87184 0.80774 0.78464 0.89913 0.88424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.24 13.97 55.49 0.78 -25.47 16 2 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 3 Si 0.86 21.47 27.74 -169.99 -4.71 16.75 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.24 -5.89 6.74 56.52 0.38 -5.51 16 7 C -0.52 -14.82 10.04 30.94 0.31 -14.51 16 8 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 9 S -0.14 -3.52 18.55 -107.50 -1.99 -5.51 16 10 C -0.12 -2.20 5.98 36.00 0.22 -1.99 16 11 C 0.56 9.68 8.10 -10.99 -0.09 9.59 16 12 O -0.52 -10.86 16.64 5.56 0.09 -10.76 16 13 N -0.65 -7.88 3.69 -185.06 -0.68 -8.56 16 14 C 0.09 0.76 8.26 -8.38 -0.07 0.69 16 15 C 0.11 0.80 4.61 -67.66 -0.31 0.49 16 16 N -0.71 -5.13 5.40 -53.47 -0.29 -5.42 16 17 C 0.52 4.33 7.82 -10.99 -0.09 4.24 16 18 O -0.53 -6.32 15.63 5.55 0.09 -6.23 16 19 C -0.06 -0.38 6.24 -29.04 -0.18 -0.56 16 20 C -0.20 -1.62 5.09 -35.92 -0.18 -1.81 16 21 C 0.05 0.44 11.25 -19.19 -0.22 0.23 16 22 N -0.47 -4.79 10.54 -15.75 -0.17 -4.96 16 23 C 0.02 0.13 12.23 51.58 0.63 0.76 16 24 S 0.13 0.92 23.22 -107.50 -2.50 -1.58 16 25 C 0.10 0.84 8.38 -8.50 -0.07 0.77 16 26 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 27 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 28 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 29 H 0.10 0.70 8.14 -51.92 -0.42 0.28 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.13 0.91 7.45 -51.93 -0.39 0.52 16 32 H 0.41 2.59 8.76 -40.82 -0.36 2.23 16 33 H 0.12 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.11 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.18 1.37 8.06 -52.48 -0.42 0.95 16 36 H 0.20 0.83 8.06 -52.48 -0.42 0.41 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 363.62 15.07 5.48 5.48 Total: -1.00 -37.64 363.62 -8.60 -46.25 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -4.55 Total: -0.58 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -0.15 Total: 0.58 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: -0.36 Total: -44.40 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: 0.18 Total: -17.00 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.71 Total: 16.75 kcal Atomic # 16 Polarization: -2.59 SS G_CDS: -4.49 Total: -7.08 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -37.64 -8.60 -46.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759202614.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.408 kcal (2) G-P(sol) polarization free energy of solvation -37.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds