Wall clock time and date at job start Sat Apr 11 2020 06:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86801 * 119.99841 * 2 1 4 4 H 1.48494 * 109.47644 * 270.00621 * 3 2 1 5 5 H 1.48506 * 109.47143 * 30.00567 * 3 2 1 6 6 H 1.48501 * 109.47120 * 150.00282 * 3 2 1 7 7 C 1.38798 * 120.00298 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99590 * 359.71971 * 7 2 1 9 9 S 1.76199 * 120.00102 * 179.97438 * 7 2 1 10 10 C 1.80998 * 100.00013 * 179.72368 * 9 7 2 11 11 C 1.50698 * 109.47116 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99994 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00022 * 179.97438 * 11 10 9 14 14 C 1.47067 * 136.05812 * 359.63749 * 13 11 10 15 15 C 1.53755 * 87.89102 * 152.95871 * 14 13 11 16 16 N 1.46497 * 114.57266 * 272.66277 * 15 14 13 17 17 C 1.34779 * 120.00099 * 248.66915 * 16 15 14 18 18 O 1.21284 * 119.99488 * 0.02562 * 17 16 15 19 19 C 1.50695 * 120.00007 * 179.97438 * 17 16 15 20 20 C 1.50700 * 109.47007 * 180.02562 * 19 17 16 21 21 C 1.33634 * 126.04079 * 89.71623 * 20 19 17 22 22 N 1.31784 * 114.50421 * 179.78933 * 21 20 19 23 23 C 1.29026 * 117.12250 * 0.52393 * 22 21 20 24 24 S 1.70971 * 110.16672 * 359.71323 * 23 22 21 25 25 C 1.47065 * 136.05752 * 180.02562 * 13 11 10 26 26 H 0.96995 * 120.00138 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47163 * 300.00283 * 10 9 7 28 28 H 1.08999 * 109.47347 * 59.99806 * 10 9 7 29 29 H 1.09010 * 113.46411 * 267.68953 * 14 13 11 30 30 H 1.08997 * 113.47100 * 38.12526 * 14 13 11 31 31 H 1.09000 * 114.08403 * 139.77717 * 15 14 13 32 32 H 0.97002 * 120.00113 * 68.66897 * 16 15 14 33 33 H 1.08990 * 109.47543 * 300.00143 * 19 17 16 34 34 H 1.09004 * 109.47066 * 60.00563 * 19 17 16 35 35 H 1.08005 * 122.74527 * 359.97438 * 21 20 19 36 36 H 1.08003 * 124.91418 * 179.68132 * 23 22 21 37 37 H 1.09001 * 113.46952 * 321.86856 * 25 13 11 38 38 H 1.09004 * 113.46955 * 92.25117 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4478 2.6527 0.7002 6 1 3.5479 1.4402 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1372 0.0036 9 16 3.7724 -1.2019 -0.0012 10 6 4.0867 -2.9844 0.0069 11 6 5.5732 -3.2323 0.0068 12 8 6.3441 -2.2961 0.0022 13 7 6.0459 -4.4944 0.0128 14 6 5.4616 -5.8440 0.0267 15 6 6.7351 -6.3410 -0.6769 16 7 6.6992 -6.2486 -2.1385 17 6 6.6540 -7.3707 -2.8838 18 8 6.6427 -8.4568 -2.3443 19 6 6.6164 -7.2756 -4.3873 20 6 6.5688 -8.6615 -4.9772 21 6 5.4641 -9.3618 -5.2514 22 7 5.6866 -10.5531 -5.7691 23 6 6.9177 -10.9009 -5.9371 24 16 7.9599 -9.6481 -5.4200 25 6 7.3730 -5.1282 0.0153 26 1 -0.4850 0.8400 0.0004 27 1 3.6441 -3.4274 0.8990 28 1 3.6435 -3.4356 -0.8809 29 1 5.3329 -6.2510 1.0298 30 1 4.5632 -5.9344 -0.5838 31 1 7.0967 -7.3034 -0.3147 32 1 6.7078 -5.3798 -2.5700 33 1 5.7305 -6.7199 -4.6942 34 1 7.5093 -6.7602 -4.7412 35 1 4.4703 -8.9812 -5.0669 36 1 7.2427 -11.8467 -6.3449 37 1 8.1033 -4.6086 -0.6050 38 1 7.7483 -5.3457 1.0153 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001759202614.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:40 Heat of formation + Delta-G solvation = -7.440330 kcal Electronic energy + Delta-G solvation = -23412.304109 eV Core-core repulsion = 19701.599761 eV Total energy + Delta-G solvation = -3710.704348 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.83400 -40.78698 -40.07281 -38.84343 -34.81099 -34.68933 -33.74921 -31.91048 -29.48147 -28.44560 -27.85643 -26.96323 -25.64978 -23.17418 -21.86374 -20.96942 -20.43076 -19.55384 -19.04958 -18.41816 -18.01993 -17.30699 -17.18523 -16.92718 -16.74882 -16.45299 -15.94108 -15.69480 -15.41187 -15.10145 -14.92000 -14.83798 -14.49370 -14.28163 -13.97436 -13.76759 -13.56353 -13.38384 -13.29003 -13.07408 -13.02365 -12.63802 -12.15613 -12.07793 -11.88110 -11.18604 -11.16974 -11.01068 -10.61445 -10.57433 -10.21945 -10.19309 -9.87980 -9.81995 -9.02782 -8.53112 -6.24864 -0.25123 0.45270 0.80306 0.92743 1.30561 1.40598 1.48389 1.51906 1.52969 1.80435 1.94408 2.14426 2.23530 2.64384 2.85026 3.23405 3.43701 3.49008 3.67533 3.86556 3.91630 4.10942 4.12979 4.28633 4.39583 4.39812 4.46837 4.56289 4.59435 4.64117 4.74544 4.77354 4.82619 5.19039 5.42215 5.68786 6.09462 6.40094 6.53208 6.76269 6.91616 7.02126 7.13698 8.59297 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.017634 B = 0.002084 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.426015 B =13435.346387 C =14319.893999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.045 3.955 3 Si 0.915 3.085 4 H -0.260 1.260 5 H -0.259 1.259 6 H -0.236 1.236 7 C -0.530 4.530 8 H 0.060 0.940 9 S -0.170 6.170 10 C -0.102 4.102 11 C 0.564 3.436 12 O -0.562 6.562 13 N -0.649 5.649 14 C 0.083 3.917 15 C 0.120 3.880 16 N -0.703 5.703 17 C 0.523 3.477 18 O -0.565 6.565 19 C -0.063 4.063 20 C -0.210 4.210 21 C 0.025 3.975 22 N -0.507 5.507 23 C 0.011 3.989 24 S 0.157 5.843 25 C 0.100 3.900 26 H 0.277 0.723 27 H 0.105 0.895 28 H 0.108 0.892 29 H 0.121 0.879 30 H 0.081 0.919 31 H 0.139 0.861 32 H 0.414 0.586 33 H 0.139 0.861 34 H 0.135 0.865 35 H 0.178 0.822 36 H 0.225 0.775 37 H 0.084 0.916 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.863 -21.044 -9.556 30.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.161 4.161 3 Si 0.737 3.263 4 H -0.185 1.185 5 H -0.184 1.184 6 H -0.160 1.160 7 C -0.677 4.677 8 H 0.078 0.922 9 S 0.056 5.944 10 C -0.253 4.253 11 C 0.353 3.647 12 O -0.440 6.440 13 N -0.386 5.386 14 C -0.041 4.041 15 C 0.013 3.987 16 N -0.354 5.354 17 C 0.310 3.690 18 O -0.443 6.443 19 C -0.105 4.105 20 C -0.332 4.332 21 C -0.126 4.126 22 N -0.220 5.220 23 C -0.285 4.285 24 S 0.410 5.590 25 C -0.022 4.022 26 H 0.087 0.913 27 H 0.123 0.877 28 H 0.126 0.874 29 H 0.139 0.861 30 H 0.100 0.900 31 H 0.156 0.844 32 H 0.250 0.750 33 H 0.157 0.843 34 H 0.153 0.847 35 H 0.195 0.805 36 H 0.242 0.758 37 H 0.102 0.898 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 21.399 -20.445 -9.338 31.034 hybrid contribution -2.382 0.354 0.126 2.411 sum 19.017 -20.091 -9.212 29.157 Atomic orbital electron populations 1.70017 1.07337 1.29085 1.48995 1.25590 0.95298 1.02341 0.92842 0.85853 0.80644 0.79464 0.80324 1.18487 1.18376 1.16025 1.22434 0.90230 0.96623 1.58441 0.92165 1.84664 1.06417 1.05711 1.97567 1.23161 0.95745 0.99604 1.06815 1.19397 0.89008 0.81139 0.75123 1.90701 1.59414 1.42623 1.51264 1.49669 1.11890 1.03852 1.73161 1.23917 0.98874 0.78367 1.02919 1.22168 0.95974 0.99991 0.80546 1.45551 1.74594 1.09507 1.05734 1.20808 0.74666 0.83535 0.89982 1.90739 1.50264 1.28680 1.74607 1.20156 1.08639 0.91942 0.89754 1.25532 0.95748 1.02370 1.09543 1.21917 1.00659 0.89631 1.00410 1.66325 1.21962 1.17085 1.16672 1.28886 0.90657 1.05383 1.03596 1.83830 1.10772 1.08893 1.55504 1.23585 0.86396 0.89532 1.02689 0.91325 0.87665 0.87409 0.86076 0.90029 0.84397 0.74989 0.84284 0.84667 0.80548 0.75845 0.89765 0.86014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.41 13.97 21.65 0.30 -55.10 16 2 C 0.04 2.60 5.50 84.86 0.47 3.07 16 3 Si 0.92 44.35 27.74 68.60 1.90 46.26 16 4 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.24 -11.41 6.74 99.48 0.67 -10.74 16 7 C -0.53 -30.53 10.04 67.95 0.68 -29.85 16 8 H 0.06 3.68 8.03 -2.91 -0.02 3.66 16 9 S -0.17 -8.45 18.55 -56.49 -1.05 -9.50 16 10 C -0.10 -3.81 5.98 71.24 0.43 -3.39 16 11 C 0.56 18.70 8.10 87.66 0.71 19.41 16 12 O -0.56 -23.23 16.64 -3.02 -0.05 -23.28 16 13 N -0.65 -14.07 3.69 -857.80 -3.16 -17.23 16 14 C 0.08 1.21 8.26 83.26 0.69 1.90 16 15 C 0.12 1.44 4.61 45.56 0.21 1.65 16 16 N -0.70 -8.35 5.40 -441.48 -2.39 -10.74 16 17 C 0.52 7.60 7.82 87.66 0.69 8.28 16 18 O -0.56 -12.66 15.63 -3.04 -0.05 -12.70 16 19 C -0.06 -0.60 6.24 29.10 0.18 -0.42 16 20 C -0.21 -3.10 5.09 24.64 0.13 -2.97 16 21 C 0.02 0.45 11.25 83.65 0.94 1.39 16 22 N -0.51 -10.18 10.54 -203.75 -2.15 -12.33 16 23 C 0.01 0.16 12.23 130.65 1.60 1.76 16 24 S 0.16 1.95 23.22 -56.49 -1.31 0.63 16 25 C 0.10 1.40 8.38 83.18 0.70 2.10 16 26 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 27 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 28 H 0.11 3.71 8.14 -2.40 -0.02 3.70 16 29 H 0.12 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.14 1.52 7.45 -2.39 -0.02 1.50 16 32 H 0.41 4.14 8.76 -92.71 -0.81 3.33 16 33 H 0.14 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.14 0.61 8.14 -2.38 -0.02 0.59 16 35 H 0.18 2.82 8.06 -2.91 -0.02 2.80 16 36 H 0.23 1.54 8.06 -2.91 -0.02 1.52 16 37 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.12 1.22 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -82.89 363.62 -0.28 -83.17 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: 0.26 Total: 7.89 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: 7.41 Total: 2.93 kcal Atomic # 7 Polarization: -88.01 SS G_CDS: -7.39 Total: -95.40 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -0.10 Total: -35.99 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.90 Total: 46.26 kcal Atomic # 16 Polarization: -6.51 SS G_CDS: -2.36 Total: -8.87 kcal Total: -82.89 -0.28 -83.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759202614.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.733 kcal (2) G-P(sol) polarization free energy of solvation -82.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds