Wall clock time and date at job start Sat Apr 11 2020 06:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34684 * 117.00182 * 2 1 4 4 O 1.21443 * 120.00244 * 359.97438 * 3 2 1 5 5 C 1.47935 * 119.99835 * 180.02562 * 3 2 1 6 6 C 1.39603 * 120.00205 * 180.02562 * 5 3 2 7 7 C 1.37813 * 119.99324 * 180.27355 * 6 5 3 8 8 C 1.39558 * 120.00086 * 359.51263 * 7 6 5 9 9 C 1.48050 * 119.99466 * 180.21048 * 8 7 6 10 10 O 1.21523 * 120.00444 * 180.24777 * 9 8 7 11 11 N 1.34778 * 119.99592 * 0.25077 * 9 8 7 12 12 S 1.65600 * 119.99823 * 179.97438 * 11 9 8 13 13 O 1.42096 * 104.27746 * 181.07312 * 12 11 9 14 14 O 1.42100 * 104.27613 * 308.92838 * 12 11 9 15 15 C 1.81399 * 104.44860 * 65.00276 * 12 11 9 16 16 C 1.52996 * 109.47077 * 180.02562 * 15 12 11 17 17 C 1.50703 * 109.47254 * 179.97438 * 16 15 12 18 18 H 1.08007 * 119.99891 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00171 * 179.97438 * 17 16 15 20 20 N 1.31509 * 119.99924 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99735 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47480 * 60.00078 * 21 19 17 23 23 H 1.48502 * 109.46915 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47395 * 299.99706 * 21 19 17 25 25 C 1.39559 * 120.01494 * 0.45925 * 8 7 6 26 26 C 1.37815 * 120.00138 * 359.80002 * 25 8 7 27 27 H 1.09010 * 109.46824 * 60.00404 * 1 2 3 28 28 H 1.09008 * 109.47682 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47486 * 300.00637 * 1 2 3 30 30 H 1.08002 * 120.00205 * 359.97438 * 6 5 3 31 31 H 1.07990 * 119.99867 * 179.72083 * 7 6 5 32 32 H 0.97000 * 120.00141 * 359.97438 * 11 9 8 33 33 H 1.09001 * 109.47167 * 299.99747 * 15 12 11 34 34 H 1.09000 * 109.47286 * 59.99752 * 15 12 11 35 35 H 1.08994 * 109.47325 * 299.99381 * 16 15 12 36 36 H 1.09006 * 109.47477 * 60.00090 * 16 15 12 37 37 H 0.96999 * 119.99840 * 179.97438 * 20 19 17 38 38 H 1.07992 * 119.99704 * 179.76784 * 25 8 7 39 39 H 1.07998 * 120.00268 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0634 1.2000 0.0000 4 8 1.4021 2.2186 -0.0005 5 6 3.5408 1.2774 -0.0006 6 6 4.1747 2.5212 0.0000 7 6 5.5509 2.5930 -0.0063 8 6 6.3108 1.4224 -0.0028 9 6 7.7893 1.4998 -0.0048 10 8 8.4511 0.4806 -0.0064 11 7 8.4012 2.7007 -0.0048 12 16 10.0549 2.7873 -0.0064 13 8 10.3329 4.1805 0.0198 14 8 10.4511 1.9409 1.0641 15 6 10.5441 2.0704 -1.5993 16 6 12.0690 2.0931 -1.7219 17 6 12.4755 1.4970 -3.0450 18 1 11.7216 1.1383 -3.7301 19 6 13.8099 1.4105 -3.3813 20 7 14.7278 1.8487 -2.5478 21 14 14.3136 0.6723 -5.0217 22 1 13.7160 1.4652 -6.1259 23 1 15.7937 0.6941 -5.1406 24 1 13.8318 -0.7300 -5.1023 25 6 5.6773 0.1789 -0.0028 26 6 4.3011 0.1066 -0.0019 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3635 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 3.5866 3.4270 0.0004 31 1 6.0413 3.5551 -0.0104 32 1 7.8729 3.5142 -0.0039 33 1 10.1905 1.0411 -1.6585 34 1 10.1054 2.6524 -2.4098 35 1 12.4231 3.1222 -1.6627 36 1 12.5075 1.5107 -0.9114 37 1 15.6666 1.7875 -2.7842 38 1 6.2656 -0.7267 -0.0039 39 1 3.8108 -0.8557 -0.0023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776123743.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:35 Heat of formation + Delta-G solvation = -168.283697 kcal Electronic energy + Delta-G solvation = -26196.570336 eV Core-core repulsion = 22003.845674 eV Total energy + Delta-G solvation = -4192.724662 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -41.19372 -40.50633 -38.68694 -36.93179 -36.75104 -35.68639 -34.76316 -33.92291 -32.17959 -31.57072 -31.20681 -28.38084 -25.78117 -25.55461 -23.24599 -22.63297 -21.70486 -21.10940 -19.61586 -18.79211 -18.41759 -17.71976 -17.39030 -16.86837 -16.57940 -15.90424 -15.87018 -15.36941 -15.15981 -15.02628 -14.91642 -14.56589 -14.31175 -13.99852 -13.98510 -13.48562 -13.09645 -12.96827 -12.61449 -12.56510 -12.42234 -11.84224 -11.77821 -11.69221 -11.67634 -11.32669 -11.12265 -11.09205 -11.04104 -10.96848 -10.57097 -10.42874 -10.36192 -9.74798 -9.68347 -9.61181 -9.21751 -8.50682 -6.13146 -4.18777 -0.24815 0.42119 0.76920 1.64781 2.10761 2.38230 2.60856 3.27564 3.27825 3.32462 3.34433 3.77911 4.01499 4.14322 4.21868 4.34262 4.36548 4.55221 4.60789 4.65549 4.69920 4.70887 4.83506 5.02022 5.09750 5.22087 5.41602 5.52421 5.54525 5.64271 5.67591 5.72401 5.82589 6.14637 6.41551 6.50669 7.17309 7.24708 7.27389 7.32825 7.79500 8.15075 8.83824 9.45762 10.97836 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.018840 B = 0.002242 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.830325 B =12487.482395 C =13326.586785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.353 6.353 3 C 0.508 3.492 4 O -0.500 6.500 5 C -0.102 4.102 6 C -0.062 4.062 7 C -0.093 4.093 8 C -0.101 4.101 9 C 0.577 3.423 10 O -0.476 6.476 11 N -1.055 6.055 12 S 2.565 3.435 13 O -0.951 6.951 14 O -0.935 6.935 15 C -0.574 4.574 16 C 0.030 3.970 17 C -0.520 4.520 18 H 0.062 0.938 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.902 3.098 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 C -0.067 4.067 26 C -0.069 4.069 27 H 0.065 0.935 28 H 0.105 0.895 29 H 0.065 0.935 30 H 0.147 0.853 31 H 0.142 0.858 32 H 0.427 0.573 33 H 0.132 0.868 34 H 0.122 0.878 35 H 0.035 0.965 36 H 0.037 0.963 37 H 0.266 0.734 38 H 0.153 0.847 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.977 -1.404 5.026 28.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.269 6.269 3 C 0.353 3.647 4 O -0.389 6.389 5 C -0.103 4.103 6 C -0.080 4.080 7 C -0.111 4.111 8 C -0.106 4.106 9 C 0.364 3.636 10 O -0.348 6.348 11 N -0.816 5.816 12 S 2.665 3.335 13 O -0.942 6.942 14 O -0.925 6.925 15 C -0.709 4.709 16 C -0.010 4.010 17 C -0.560 4.560 18 H 0.080 0.920 19 C -0.145 4.145 20 N -0.528 5.528 21 Si 0.729 3.271 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.086 4.086 26 C -0.087 4.087 27 H 0.084 0.916 28 H 0.123 0.877 29 H 0.084 0.916 30 H 0.165 0.835 31 H 0.160 0.840 32 H 0.263 0.737 33 H 0.150 0.850 34 H 0.141 0.859 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.076 0.924 38 H 0.170 0.830 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -27.048 -1.482 5.819 27.707 hybrid contribution -0.403 -0.040 -1.416 1.473 sum -27.451 -1.522 4.403 27.844 Atomic orbital electron populations 1.23342 0.75444 1.04098 1.02828 1.86536 1.23963 1.32338 1.84086 1.21223 0.89033 0.81640 0.72827 1.90851 1.66706 1.36024 1.45309 1.19322 0.89223 0.95171 1.06590 1.21208 0.94141 0.97140 0.95483 1.21320 0.93507 0.98094 0.98194 1.20193 0.92568 0.94980 1.02883 1.18185 0.88483 0.82652 0.74330 1.90997 1.66049 1.33348 1.44362 1.55434 1.31122 1.14466 1.80587 1.06797 0.71873 0.75202 0.79591 1.93598 1.81184 1.31199 1.88171 1.93605 1.78657 1.68677 1.51571 1.30339 1.11527 1.12635 1.16398 1.18996 0.82639 0.99217 1.00110 1.20930 0.92118 1.41358 1.01546 0.92001 1.25065 0.96536 0.95324 0.97551 1.69939 1.00999 1.45862 1.35979 0.86498 0.77461 0.79729 0.83392 1.20082 1.21074 1.20031 1.21399 0.94195 0.97753 0.95242 1.21496 0.93348 0.98411 0.95419 0.91614 0.87677 0.91623 0.83483 0.84035 0.73670 0.84988 0.85924 0.94711 0.94519 0.92437 0.82977 0.83341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.17 10.56 101.05 1.07 1.24 16 2 O -0.35 -2.60 9.80 -40.45 -0.40 -3.00 16 3 C 0.51 4.50 7.90 34.70 0.27 4.78 16 4 O -0.50 -5.53 16.12 -19.22 -0.31 -5.84 16 5 C -0.10 -0.82 5.88 -104.91 -0.62 -1.43 16 6 C -0.06 -0.45 9.58 -39.23 -0.38 -0.83 16 7 C -0.09 -0.67 9.53 -39.24 -0.37 -1.05 16 8 C -0.10 -0.97 5.88 -104.89 -0.62 -1.59 16 9 C 0.58 7.42 7.52 -12.24 -0.09 7.33 16 10 O -0.48 -7.84 14.43 -11.78 -0.17 -8.01 16 11 N -1.06 -12.80 5.55 30.58 0.17 -12.63 16 12 S 2.57 44.85 5.11 -107.50 -0.55 44.30 16 13 O -0.95 -18.13 18.08 -57.54 -1.04 -19.17 16 14 O -0.93 -19.85 17.04 -64.79 -1.10 -20.95 16 15 C -0.57 -11.04 5.82 37.16 0.22 -10.83 16 16 C 0.03 0.75 4.98 -27.88 -0.14 0.62 16 17 C -0.52 -14.35 9.11 -34.44 -0.31 -14.66 16 18 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 21 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 25 C -0.07 -0.58 9.58 -39.24 -0.38 -0.95 16 26 C -0.07 -0.50 9.60 -39.23 -0.38 -0.87 16 27 H 0.07 0.30 8.14 -51.92 -0.42 -0.12 16 28 H 0.10 0.21 8.14 -51.92 -0.42 -0.21 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.15 0.93 7.64 -52.49 -0.40 0.53 16 31 H 0.14 0.64 6.39 -52.49 -0.34 0.30 16 32 H 0.43 3.38 6.81 -34.47 -0.23 3.14 16 33 H 0.13 2.48 7.19 -51.92 -0.37 2.10 16 34 H 0.12 2.02 8.14 -51.92 -0.42 1.59 16 35 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.27 7.39 8.31 -40.82 -0.34 7.06 16 38 H 0.15 1.26 7.64 -52.49 -0.40 0.86 16 39 H 0.15 0.79 7.60 -52.49 -0.40 0.39 16 LS Contribution 359.83 15.07 5.42 5.42 Total: -1.00 -38.00 359.83 -8.30 -46.30 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -4.22 Total: -0.30 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -1.82 Total: -16.72 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.91 Total: -38.24 kcal Atomic # 8 Polarization: -53.95 SS G_CDS: -3.02 Total: -56.97 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 44.85 SS G_CDS: -0.55 Total: 44.30 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -38.00 -8.30 -46.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776123743.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.981 kcal (2) G-P(sol) polarization free energy of solvation -38.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds