Wall clock time and date at job start Sat Apr 11 2020 06:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99709 * 2 1 4 4 H 1.48504 * 109.47021 * 239.99789 * 3 2 1 5 5 H 1.48496 * 109.47603 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46925 * 120.00334 * 3 2 1 7 7 C 1.37879 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99761 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99990 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46756 * 180.02562 * 9 7 2 11 11 C 1.34772 * 119.99502 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00260 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99783 * 180.02562 * 11 10 9 14 14 O 1.45204 * 109.47024 * 180.02562 * 13 11 10 15 15 C 1.34230 * 116.99810 * 180.02562 * 14 13 11 16 16 O 1.20828 * 119.99945 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.00119 * 179.97438 * 15 14 13 18 18 S 1.81394 * 109.47410 * 179.97438 * 17 15 14 19 19 C 1.81398 * 103.00193 * 179.97438 * 18 17 15 20 20 C 1.50706 * 109.47148 * 179.97438 * 19 18 17 21 21 C 1.38244 * 119.97491 * 269.72674 * 20 19 18 22 22 C 1.38201 * 120.02142 * 179.72306 * 21 20 19 23 23 C 1.38459 * 119.97601 * 0.57371 * 22 21 20 24 24 F 1.35094 * 120.02797 * 179.67746 * 23 22 21 25 25 C 1.38461 * 119.94519 * 359.70287 * 23 22 21 26 26 C 1.38193 * 119.98059 * 359.97438 * 25 23 22 27 27 H 0.97001 * 119.99913 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46789 * 60.00226 * 9 7 2 29 29 H 1.09006 * 109.46933 * 300.00273 * 9 7 2 30 30 H 0.96998 * 120.00018 * 0.02562 * 10 9 7 31 31 H 1.08993 * 109.47512 * 60.00019 * 13 11 10 32 32 H 1.09003 * 109.46772 * 299.99813 * 13 11 10 33 33 H 1.08998 * 109.47180 * 59.99674 * 17 15 14 34 34 H 1.09001 * 109.47086 * 299.99751 * 17 15 14 35 35 H 1.09000 * 109.46753 * 60.00559 * 19 18 17 36 36 H 1.09000 * 109.47055 * 299.99894 * 19 18 17 37 37 H 1.08000 * 119.98716 * 359.97438 * 21 20 19 38 38 H 1.07996 * 120.01399 * 180.25476 * 22 21 20 39 39 H 1.08009 * 120.01051 * 179.97438 * 25 23 22 40 40 H 1.07999 * 119.99486 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7537 -4.8833 0.0000 12 8 0.5614 -5.1049 0.0000 13 6 2.7330 -6.0287 0.0006 14 8 2.0070 -7.2862 0.0005 15 6 2.7381 -8.4120 0.0015 16 8 3.9447 -8.3487 0.0019 17 6 2.0540 -9.7547 0.0020 18 16 3.3032 -11.0699 0.0026 19 6 2.3028 -12.5831 0.0040 20 6 3.2110 -13.7857 0.0039 21 6 3.6219 -14.3409 -1.1936 22 6 4.4593 -15.4403 -1.1948 23 6 4.8772 -15.9929 0.0040 24 9 5.6906 -17.0716 0.0041 25 6 4.4604 -15.4394 1.2028 26 6 3.6284 -14.3360 1.2016 27 1 -0.4850 0.8401 0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6246 -2.5570 0.8897 30 1 3.1567 -3.4354 -0.0002 31 1 3.3596 -5.9707 0.8905 32 1 3.3597 -5.9714 -0.8894 33 1 1.4315 -9.8457 -0.8881 34 1 1.4308 -9.8447 0.8918 35 1 1.6737 -12.6034 -0.8859 36 1 1.6741 -12.6021 0.8941 37 1 3.2916 -13.9129 -2.1285 38 1 4.7836 -15.8714 -2.1304 39 1 4.7854 -15.8699 2.1385 40 1 3.3028 -13.9043 2.1365 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000024775487.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:25 Heat of formation + Delta-G solvation = -143.987727 kcal Electronic energy + Delta-G solvation = -24305.638253 eV Core-core repulsion = 20126.339933 eV Total energy + Delta-G solvation = -4179.298320 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.36045 -40.67236 -39.64510 -38.77634 -36.51290 -34.29781 -33.08728 -32.45325 -31.68644 -31.15935 -28.96194 -27.31464 -26.59179 -23.61273 -22.79638 -22.22751 -21.37368 -20.00346 -18.22958 -18.00442 -17.70196 -17.03745 -16.90200 -16.88101 -16.11866 -16.04790 -15.91251 -15.49871 -15.12546 -15.05665 -14.68324 -14.39561 -14.23309 -14.18016 -14.04622 -13.76267 -13.09967 -13.05607 -12.66995 -12.62333 -12.50990 -12.22290 -12.02092 -11.81718 -11.54323 -11.06133 -10.93846 -10.83556 -10.80244 -10.53057 -10.37218 -9.65021 -9.48812 -9.24762 -9.05263 -8.80989 -8.11320 -8.03629 -6.22180 -4.29902 0.24754 0.70201 1.11028 1.92286 1.99468 2.38568 3.11255 3.11740 3.22635 3.27703 3.29008 3.74290 3.84960 4.02002 4.09876 4.29897 4.37350 4.47163 4.53044 4.55770 4.69810 4.80760 4.93798 4.94625 5.06899 5.13633 5.16750 5.27872 5.36064 5.42645 5.59139 5.66879 5.89790 6.16269 6.32571 7.17907 7.25033 7.41809 7.45818 7.58297 7.88770 8.44951 8.66889 8.91176 9.36596 10.87859 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.048266 B = 0.001334 C = 0.001318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.978453 B =20978.456612 C =21237.590494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.705 5.705 11 C 0.500 3.500 12 O -0.535 6.535 13 C 0.050 3.950 14 O -0.324 6.324 15 C 0.478 3.522 16 O -0.489 6.489 17 C -0.107 4.107 18 S -0.168 6.168 19 C -0.066 4.066 20 C -0.084 4.084 21 C -0.070 4.070 22 C -0.153 4.153 23 C 0.103 3.897 24 F -0.139 7.139 25 C -0.154 4.154 26 C -0.070 4.070 27 H 0.267 0.733 28 H 0.030 0.970 29 H 0.030 0.970 30 H 0.393 0.607 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.074 -31.755 0.012 32.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.355 5.355 11 C 0.283 3.717 12 O -0.412 6.412 13 C -0.028 4.028 14 O -0.239 6.239 15 C 0.319 3.681 16 O -0.377 6.377 17 C -0.255 4.255 18 S 0.061 5.939 19 C -0.214 4.214 20 C -0.085 4.085 21 C -0.090 4.090 22 C -0.172 4.172 23 C 0.083 3.917 24 F -0.118 7.118 25 C -0.172 4.172 26 C -0.090 4.090 27 H 0.077 0.923 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.226 0.774 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.155 0.845 38 H 0.156 0.844 39 H 0.156 0.844 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 7.483 -31.567 0.011 32.442 hybrid contribution -0.179 0.819 0.001 0.838 sum 7.305 -30.749 0.012 31.604 Atomic orbital electron populations 1.69960 1.06131 1.27558 1.48531 1.24945 0.94930 0.99483 0.94543 0.86445 0.79400 0.82150 0.78747 1.20021 1.21022 1.20016 1.21170 0.93316 0.90298 1.53747 0.91790 1.19186 0.88149 0.81499 0.98054 1.46369 1.11578 1.05309 1.72285 1.19857 0.89075 0.83986 0.78831 1.90710 1.16303 1.84545 1.49662 1.22931 0.94426 0.80565 1.04844 1.86532 1.40167 1.13852 1.83366 1.22504 0.86250 0.86042 0.73339 1.90728 1.14971 1.87453 1.44500 1.23095 1.01781 0.91487 1.09170 1.87830 1.11331 0.96607 1.98134 1.22438 0.99148 0.93188 1.06587 1.19204 0.99752 0.95859 0.93711 1.20951 0.95548 0.94396 0.98118 1.21159 1.00480 0.98232 0.97355 1.17796 0.93009 0.86144 0.94778 1.91514 1.70340 1.52474 1.97440 1.21160 1.00558 0.98157 0.97356 1.20951 0.95564 0.94367 0.98127 0.92294 0.95214 0.95226 0.77368 0.88275 0.88282 0.85593 0.85588 0.88485 0.88480 0.84513 0.84403 0.84402 0.84511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.56 13.29 55.43 0.74 -24.82 16 2 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.91 20.46 29.54 -169.99 -5.02 15.44 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.55 -14.47 9.28 -34.44 -0.32 -14.79 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.25 6.47 5.43 -5.19 -0.03 6.44 16 10 N -0.71 -14.24 5.55 -61.47 -0.34 -14.58 16 11 C 0.50 9.71 7.91 -10.99 -0.09 9.63 16 12 O -0.53 -12.72 16.50 -14.10 -0.23 -12.95 16 13 C 0.05 0.73 5.94 36.01 0.21 0.94 16 14 O -0.32 -4.79 9.76 -45.90 -0.45 -5.23 16 15 C 0.48 6.03 7.98 36.00 0.29 6.31 16 16 O -0.49 -7.28 15.61 -18.75 -0.29 -7.57 16 17 C -0.11 -0.90 6.53 36.00 0.24 -0.66 16 18 S -0.17 -1.49 20.86 -107.50 -2.24 -3.73 16 19 C -0.07 -0.35 6.07 36.01 0.22 -0.13 16 20 C -0.08 -0.51 5.14 -104.61 -0.54 -1.05 16 21 C -0.07 -0.41 9.70 -39.59 -0.38 -0.79 16 22 C -0.15 -0.96 10.03 -39.51 -0.40 -1.36 16 23 C 0.10 0.75 7.30 -39.42 -0.29 0.46 16 24 F -0.14 -1.16 17.27 2.25 0.04 -1.12 16 25 C -0.15 -0.96 10.03 -39.52 -0.40 -1.36 16 26 C -0.07 -0.41 9.70 -39.59 -0.38 -0.80 16 27 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 28 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.39 6.65 8.32 -40.82 -0.34 6.31 16 31 H 0.10 1.25 8.13 -51.93 -0.42 0.83 16 32 H 0.10 1.25 8.13 -51.93 -0.42 0.83 16 33 H 0.13 0.81 8.14 -51.92 -0.42 0.38 16 34 H 0.13 0.81 8.14 -51.92 -0.42 0.38 16 35 H 0.10 0.37 8.08 -51.92 -0.42 -0.05 16 36 H 0.10 0.37 8.09 -51.92 -0.42 -0.05 16 37 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 38 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 39 H 0.14 0.64 8.06 -52.48 -0.42 0.22 16 40 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 LS Contribution 377.64 15.07 5.69 5.69 Total: -1.00 -34.41 377.64 -9.01 -43.43 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -4.94 Total: 0.94 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -1.96 Total: 4.51 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.40 Total: -39.40 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.97 Total: -25.76 kcal Atomic # 9 Polarization: -1.16 SS G_CDS: 0.04 Total: -1.12 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.24 Total: -3.73 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.41 -9.01 -43.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024775487.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.560 kcal (2) G-P(sol) polarization free energy of solvation -34.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds