Wall clock time and date at job start Sat Apr 11 2020 06:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99709 * 2 1 4 4 H 1.48504 * 109.47021 * 239.99789 * 3 2 1 5 5 H 1.48496 * 109.47603 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46925 * 120.00334 * 3 2 1 7 7 C 1.37879 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99761 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99990 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46756 * 180.02562 * 9 7 2 11 11 C 1.34772 * 119.99502 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00260 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99783 * 180.02562 * 11 10 9 14 14 O 1.45204 * 109.47024 * 180.02562 * 13 11 10 15 15 C 1.34230 * 116.99810 * 180.02562 * 14 13 11 16 16 O 1.20828 * 119.99945 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.00119 * 179.97438 * 15 14 13 18 18 S 1.81394 * 109.47410 * 179.97438 * 17 15 14 19 19 C 1.81398 * 103.00193 * 179.97438 * 18 17 15 20 20 C 1.50706 * 109.47148 * 179.97438 * 19 18 17 21 21 C 1.38244 * 119.97491 * 269.72674 * 20 19 18 22 22 C 1.38201 * 120.02142 * 179.72306 * 21 20 19 23 23 C 1.38459 * 119.97601 * 0.57371 * 22 21 20 24 24 F 1.35094 * 120.02797 * 179.67746 * 23 22 21 25 25 C 1.38461 * 119.94519 * 359.70287 * 23 22 21 26 26 C 1.38193 * 119.98059 * 359.97438 * 25 23 22 27 27 H 0.97001 * 119.99913 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46789 * 60.00226 * 9 7 2 29 29 H 1.09006 * 109.46933 * 300.00273 * 9 7 2 30 30 H 0.96998 * 120.00018 * 0.02562 * 10 9 7 31 31 H 1.08993 * 109.47512 * 60.00019 * 13 11 10 32 32 H 1.09003 * 109.46772 * 299.99813 * 13 11 10 33 33 H 1.08998 * 109.47180 * 59.99674 * 17 15 14 34 34 H 1.09001 * 109.47086 * 299.99751 * 17 15 14 35 35 H 1.09000 * 109.46753 * 60.00559 * 19 18 17 36 36 H 1.09000 * 109.47055 * 299.99894 * 19 18 17 37 37 H 1.08000 * 119.98716 * 359.97438 * 21 20 19 38 38 H 1.07996 * 120.01399 * 180.25476 * 22 21 20 39 39 H 1.08009 * 120.01051 * 179.97438 * 25 23 22 40 40 H 1.07999 * 119.99486 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7537 -4.8833 0.0000 12 8 0.5614 -5.1049 0.0000 13 6 2.7330 -6.0287 0.0006 14 8 2.0070 -7.2862 0.0005 15 6 2.7381 -8.4120 0.0015 16 8 3.9447 -8.3487 0.0019 17 6 2.0540 -9.7547 0.0020 18 16 3.3032 -11.0699 0.0026 19 6 2.3028 -12.5831 0.0040 20 6 3.2110 -13.7857 0.0039 21 6 3.6219 -14.3409 -1.1936 22 6 4.4593 -15.4403 -1.1948 23 6 4.8772 -15.9929 0.0040 24 9 5.6906 -17.0716 0.0041 25 6 4.4604 -15.4394 1.2028 26 6 3.6284 -14.3360 1.2016 27 1 -0.4850 0.8401 0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6246 -2.5570 0.8897 30 1 3.1567 -3.4354 -0.0002 31 1 3.3596 -5.9707 0.8905 32 1 3.3597 -5.9714 -0.8894 33 1 1.4315 -9.8457 -0.8881 34 1 1.4308 -9.8447 0.8918 35 1 1.6737 -12.6034 -0.8859 36 1 1.6741 -12.6021 0.8941 37 1 3.2916 -13.9129 -2.1285 38 1 4.7836 -15.8714 -2.1304 39 1 4.7854 -15.8699 2.1385 40 1 3.3028 -13.9043 2.1365 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000024775487.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:24 Heat of formation + Delta-G solvation = -164.465722 kcal Electronic energy + Delta-G solvation = -24306.526246 eV Core-core repulsion = 20126.339933 eV Total energy + Delta-G solvation = -4180.186313 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.92781 -41.76512 -40.37927 -40.07446 -37.64794 -36.18687 -34.41981 -33.52313 -32.11564 -32.02905 -30.43607 -28.37390 -27.70308 -24.68482 -24.04651 -22.87831 -22.28203 -21.65607 -19.31986 -18.98109 -18.67796 -18.06385 -18.04723 -17.41366 -17.36827 -17.07873 -16.67686 -16.62287 -16.40479 -16.39054 -15.81785 -15.14693 -15.12821 -14.81079 -14.68474 -14.60979 -14.44925 -14.06997 -14.05478 -13.74958 -13.59583 -13.26739 -13.04271 -12.95929 -12.69659 -12.68346 -12.24128 -11.96564 -11.95710 -11.85566 -11.52349 -11.09131 -10.92581 -10.80490 -10.08446 -9.93459 -9.54069 -8.74121 -8.29343 -6.45961 -0.28695 0.26952 0.50826 0.97611 1.37578 1.45708 1.48052 1.48263 1.54319 1.56674 2.33732 2.54733 2.67635 3.06002 3.27088 3.50746 3.61653 3.71447 3.72843 3.96035 3.96366 4.03781 4.05840 4.11084 4.24996 4.30632 4.54379 4.60488 4.97044 4.99156 5.05983 5.15090 5.16920 5.22103 5.22868 5.41382 5.46477 5.62546 5.82171 5.88249 6.46246 6.62683 6.77183 7.20293 7.35056 8.82411 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.048266 B = 0.001334 C = 0.001318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.978453 B =20978.456612 C =21237.590494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.984 3.016 4 H -0.263 1.263 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.559 4.559 8 H 0.086 0.914 9 C 0.266 3.734 10 N -0.698 5.698 11 C 0.500 3.500 12 O -0.583 6.583 13 C 0.062 3.938 14 O -0.342 6.342 15 C 0.478 3.522 16 O -0.514 6.514 17 C -0.096 4.096 18 S -0.223 6.223 19 C -0.049 4.049 20 C -0.091 4.091 21 C -0.074 4.074 22 C -0.160 4.160 23 C 0.080 3.920 24 F -0.150 7.150 25 C -0.160 4.160 26 C -0.074 4.074 27 H 0.269 0.731 28 H -0.007 1.007 29 H -0.007 1.007 30 H 0.412 0.588 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.153 0.847 38 H 0.149 0.851 39 H 0.149 0.851 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.248 -32.084 0.012 33.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.193 4.193 3 Si 0.807 3.193 4 H -0.187 1.187 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.597 4.597 8 H 0.104 0.896 9 C 0.144 3.856 10 N -0.350 5.350 11 C 0.286 3.714 12 O -0.463 6.463 13 C -0.015 4.015 14 O -0.257 6.257 15 C 0.321 3.679 16 O -0.403 6.403 17 C -0.243 4.243 18 S 0.006 5.994 19 C -0.196 4.196 20 C -0.093 4.093 21 C -0.094 4.094 22 C -0.179 4.179 23 C 0.060 3.940 24 F -0.129 7.129 25 C -0.179 4.179 26 C -0.094 4.094 27 H 0.078 0.922 28 H 0.011 0.989 29 H 0.011 0.989 30 H 0.249 0.751 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.167 0.833 34 H 0.167 0.833 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.171 0.829 38 H 0.167 0.833 39 H 0.167 0.833 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 8.708 -31.926 0.011 33.092 hybrid contribution -0.571 0.801 0.001 0.984 sum 8.137 -31.125 0.012 32.171 Atomic orbital electron populations 1.70120 1.08207 1.28677 1.49751 1.26021 0.95747 1.03774 0.93796 0.85222 0.77916 0.76717 0.79459 1.18739 1.21143 1.18726 1.21588 0.94425 0.90459 1.53216 0.89646 1.18634 0.88565 0.83742 0.94671 1.46046 1.11741 1.04753 1.72451 1.20662 0.89278 0.84686 0.76804 1.90685 1.18852 1.85293 1.51512 1.22757 0.92550 0.78977 1.07224 1.86530 1.41041 1.14356 1.83802 1.23230 0.86105 0.86450 0.72123 1.90719 1.16112 1.87712 1.45712 1.23143 1.01338 0.88497 1.11347 1.88039 1.13818 0.99202 1.98354 1.22473 0.98398 0.90234 1.08494 1.19401 0.99935 0.96091 0.93836 1.21201 0.95143 0.94119 0.98918 1.21366 1.00509 0.98446 0.97573 1.18094 0.93703 0.86424 0.95735 1.91480 1.70806 1.53093 1.97533 1.21367 1.00584 0.98370 0.97574 1.21201 0.95164 0.94096 0.98925 0.92204 0.98862 0.98873 0.75128 0.85777 0.85785 0.83303 0.83296 0.86612 0.86608 0.82898 0.83300 0.83300 0.82906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.87 13.29 21.45 0.28 -54.58 16 2 C 0.01 0.36 5.46 84.66 0.46 0.82 16 3 Si 0.98 41.39 29.54 68.60 2.03 43.42 16 4 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 5 H -0.29 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 7 C -0.56 -29.54 9.28 25.60 0.24 -29.30 16 8 H 0.09 4.04 7.60 -2.91 -0.02 4.02 16 9 C 0.27 14.14 5.43 85.63 0.46 14.60 16 10 N -0.70 -28.13 5.55 -466.78 -2.59 -30.72 16 11 C 0.50 19.36 7.91 87.66 0.69 20.05 16 12 O -0.58 -28.38 16.50 15.78 0.26 -28.12 16 13 C 0.06 1.69 5.94 71.24 0.42 2.12 16 14 O -0.34 -9.55 9.76 -45.06 -0.44 -9.99 16 15 C 0.48 11.15 7.98 71.24 0.57 11.72 16 16 O -0.51 -14.46 15.61 21.96 0.34 -14.11 16 17 C -0.10 -1.36 6.53 71.24 0.47 -0.89 16 18 S -0.22 -3.52 20.86 -56.49 -1.18 -4.69 16 19 C -0.05 -0.38 6.07 71.24 0.43 0.06 16 20 C -0.09 -0.92 5.14 -19.86 -0.10 -1.02 16 21 C -0.07 -0.75 9.70 22.26 0.22 -0.53 16 22 C -0.16 -1.89 10.03 22.31 0.22 -1.66 16 23 C 0.08 1.15 7.30 22.38 0.16 1.31 16 24 F -0.15 -2.54 17.27 44.97 0.78 -1.76 16 25 C -0.16 -1.89 10.03 22.31 0.22 -1.67 16 26 C -0.07 -0.75 9.70 22.26 0.22 -0.53 16 27 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 28 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 29 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 30 H 0.41 13.34 8.32 -92.71 -0.77 12.57 16 31 H 0.12 2.82 8.13 -2.39 -0.02 2.80 16 32 H 0.12 2.82 8.13 -2.39 -0.02 2.80 16 33 H 0.15 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.15 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.12 0.49 8.08 -2.39 -0.02 0.47 16 36 H 0.12 0.49 8.09 -2.39 -0.02 0.47 16 37 H 0.15 0.95 8.06 -2.91 -0.02 0.93 16 38 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 39 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 40 H 0.15 0.96 8.06 -2.91 -0.02 0.94 16 Total: -1.00 -77.15 377.64 4.48 -72.67 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 0.31 Total: 12.82 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: 4.69 Total: 15.07 kcal Atomic # 7 Polarization: -83.00 SS G_CDS: -2.30 Total: -85.30 kcal Atomic # 8 Polarization: -52.38 SS G_CDS: 0.16 Total: -52.22 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.78 Total: -1.76 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.18 Total: -4.69 kcal Total: -77.15 4.48 -72.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024775487.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.794 kcal (2) G-P(sol) polarization free energy of solvation -77.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds