Wall clock time and date at job start Sat Apr 11 2020 06:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38268 * 119.94193 * 2 1 4 4 C 1.38102 * 120.09549 * 179.97438 * 3 2 1 5 5 C 1.38902 * 119.97622 * 0.02562 * 4 3 2 6 6 N 1.39924 * 120.05282 * 180.02562 * 5 4 3 7 7 C 1.34781 * 120.00189 * 33.30921 * 6 5 4 8 8 O 1.21285 * 119.99615 * 5.27526 * 7 6 5 9 9 C 1.50697 * 120.00052 * 185.27551 * 7 6 5 10 10 H 1.09003 * 109.47560 * 305.00060 * 9 7 6 11 11 C 1.53006 * 109.47293 * 64.99803 * 9 7 6 12 12 O 1.45192 * 109.47197 * 184.99511 * 9 7 6 13 13 C 1.34235 * 117.00170 * 149.99698 * 12 9 7 14 14 O 1.20827 * 119.99669 * 0.02562 * 13 12 9 15 15 C 1.50695 * 120.00119 * 180.02562 * 13 12 9 16 16 S 1.80998 * 109.47332 * 180.02562 * 15 13 12 17 17 C 1.76198 * 100.00364 * 179.97438 * 16 15 13 18 18 H 1.07996 * 119.99891 * 359.97438 * 17 16 15 19 19 C 1.38801 * 120.00064 * 179.97438 * 17 16 15 20 20 N 1.31630 * 119.99965 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99982 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46961 * 89.99961 * 21 19 17 23 23 H 1.48503 * 109.47068 * 210.00142 * 21 19 17 24 24 H 1.48493 * 109.47137 * 330.00165 * 21 19 17 25 25 C 1.38814 * 119.88993 * 359.75118 * 5 4 3 26 26 C 1.38349 * 119.89976 * 0.48463 * 25 5 4 27 27 F 1.35103 * 119.98997 * 179.79349 * 26 25 5 28 28 H 1.09003 * 109.47255 * 270.02337 * 1 2 3 29 29 H 1.09000 * 109.47031 * 30.02065 * 1 2 3 30 30 H 1.08998 * 109.47574 * 150.02265 * 1 2 3 31 31 H 1.08002 * 119.95363 * 359.97438 * 3 2 1 32 32 H 1.07997 * 120.00634 * 180.02562 * 4 3 2 33 33 H 0.97001 * 119.99975 * 213.30414 * 6 5 4 34 34 H 1.08997 * 109.47012 * 59.99619 * 11 9 7 35 35 H 1.08992 * 109.47349 * 180.02562 * 11 9 7 36 36 H 1.09002 * 109.46840 * 299.99849 * 11 9 7 37 37 H 1.09003 * 109.47155 * 300.00005 * 15 13 12 38 38 H 1.09000 * 109.47310 * 60.00440 * 15 13 12 39 39 H 0.96998 * 119.99826 * 180.02562 * 20 19 17 40 40 H 1.07997 * 120.04522 * 180.27273 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1981 0.0000 4 6 3.5782 1.2018 0.0005 5 6 4.2754 0.0005 0.0005 6 7 5.6746 0.0024 0.0016 7 6 6.3468 0.9785 0.6436 8 8 5.7425 1.8002 1.2997 9 6 7.8489 1.0487 0.5460 10 1 8.2782 0.0957 0.8553 11 6 8.2529 1.3445 -0.8999 12 8 8.3413 2.1051 1.4117 13 6 9.5664 1.9423 1.9357 14 8 10.2063 0.9501 1.6789 15 6 10.1437 2.9970 2.8441 16 16 11.7960 2.4911 3.3824 17 6 12.2207 3.8656 4.3998 18 1 11.5237 4.6812 4.5241 19 6 13.4509 3.9002 5.0416 20 7 14.3006 2.9064 4.8898 21 14 13.9008 5.3570 6.1208 22 1 13.4603 5.0952 7.5145 23 1 15.3722 5.5559 6.0957 24 1 13.2275 6.5780 5.6100 25 6 3.5817 -1.2019 0.0052 26 6 2.1983 -1.2000 -0.0003 27 9 1.5213 -2.3692 0.0001 28 1 -0.3634 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3634 -0.8901 -0.5135 31 1 1.6554 2.1325 -0.0004 32 1 4.1157 2.1385 0.0010 33 1 6.1609 -0.6989 -0.4596 34 1 7.8237 2.2974 -1.2093 35 1 9.3393 1.3948 -0.9705 36 1 7.8832 0.5514 -1.5498 37 1 10.2109 3.9427 2.3062 38 1 9.4992 3.1192 3.7146 39 1 15.1602 2.9304 5.3385 40 1 4.1213 -2.1374 0.0097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046256658.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:32 Heat of formation + Delta-G solvation = -141.557726 kcal Electronic energy + Delta-G solvation = -25653.004471 eV Core-core repulsion = 21473.811524 eV Total energy + Delta-G solvation = -4179.192947 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.27442 -41.19611 -40.15351 -38.78984 -36.34745 -35.48987 -32.92123 -32.50958 -31.55399 -30.95436 -29.51605 -27.05529 -25.60708 -24.91476 -23.51562 -22.49169 -21.18011 -20.49724 -18.75467 -18.25683 -17.64373 -17.30844 -16.73596 -16.32895 -16.09909 -16.08022 -15.91898 -15.40221 -15.11964 -14.86536 -14.30974 -14.16769 -14.11670 -13.84845 -13.66101 -13.45406 -13.12560 -12.95115 -12.72185 -12.67129 -12.52233 -12.22566 -12.16232 -11.73920 -11.67839 -11.12707 -11.08695 -10.89802 -10.82870 -10.64976 -10.22178 -10.05625 -9.91924 -9.25342 -9.13708 -8.49903 -8.40941 -6.64007 -6.29948 -4.02952 0.65380 0.78875 1.98027 2.09848 2.50791 2.80230 3.19276 3.19672 3.23236 3.27642 3.47016 3.88868 4.06258 4.12605 4.31286 4.38883 4.52971 4.65650 4.68076 4.79513 4.87708 4.98405 5.06265 5.17634 5.19429 5.26452 5.36113 5.46870 5.49151 5.57067 5.67063 5.73365 5.77287 5.78626 5.94853 6.01594 6.05217 6.45043 6.52331 6.81163 7.53627 7.60288 7.99805 8.28291 9.15896 10.77556 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.027028 B = 0.001795 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.713398 B =15595.255961 C =15977.148153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.136 4.136 3 C -0.071 4.071 4 C -0.127 4.127 5 C 0.176 3.824 6 N -0.671 5.671 7 C 0.521 3.479 8 O -0.489 6.489 9 C 0.071 3.929 10 H 0.115 0.885 11 C -0.165 4.165 12 O -0.332 6.332 13 C 0.482 3.518 14 O -0.486 6.486 15 C -0.128 4.128 16 S -0.057 6.057 17 C -0.536 4.536 18 H 0.077 0.923 19 C 0.075 3.925 20 N -0.868 5.868 21 Si 0.922 3.078 22 H -0.276 1.276 23 H -0.281 1.281 24 H -0.271 1.271 25 C -0.178 4.178 26 C 0.116 3.884 27 F -0.136 7.136 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.137 0.863 32 H 0.143 0.857 33 H 0.415 0.585 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.270 0.730 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.367 -6.775 -14.592 29.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.137 4.137 3 C -0.090 4.090 4 C -0.147 4.147 5 C 0.081 3.919 6 N -0.319 5.319 7 C 0.307 3.693 8 O -0.360 6.360 9 C 0.011 3.989 10 H 0.133 0.867 11 C -0.223 4.223 12 O -0.249 6.249 13 C 0.323 3.677 14 O -0.371 6.371 15 C -0.276 4.276 16 S 0.169 5.831 17 C -0.684 4.684 18 H 0.095 0.905 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.748 3.252 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.196 1.196 25 C -0.200 4.200 26 C 0.096 3.904 27 F -0.114 7.114 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.155 0.845 32 H 0.161 0.839 33 H 0.252 0.748 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.080 0.920 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -23.787 -7.500 -14.401 28.800 hybrid contribution -0.140 1.210 0.758 1.435 sum -23.927 -6.289 -13.643 28.252 Atomic orbital electron populations 1.20706 0.90017 1.03279 1.02873 1.19956 0.97223 0.91840 1.04731 1.20829 0.93355 0.97247 0.97561 1.21260 0.94208 0.97937 1.01279 1.17339 0.82390 0.93270 0.98892 1.43394 1.04467 1.29507 1.54488 1.20482 0.89434 0.80906 0.78496 1.90776 1.69418 1.38457 1.37348 1.22265 0.90143 0.94103 0.92352 0.86736 1.22171 1.04359 1.03540 0.92212 1.86684 1.34197 1.45077 1.58923 1.23498 0.78495 0.87428 0.78247 1.90661 1.59298 1.29739 1.57393 1.23321 1.05233 0.99002 1.00001 1.85373 1.06255 1.30339 1.61106 1.22845 1.05203 1.06631 1.33753 0.90495 1.25003 0.95098 0.97101 0.96283 1.70006 1.08203 1.30677 1.41367 0.86110 0.77738 0.81256 0.80095 1.20169 1.20697 1.19550 1.20760 0.92703 0.98294 1.08198 1.17123 0.89166 0.81037 1.03063 1.91493 1.80042 1.46031 1.93865 0.90801 0.90902 0.91260 0.84469 0.83913 0.74820 0.90697 0.89769 0.90288 0.87633 0.87622 0.92049 0.84211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 9.83 36.01 0.35 -0.31 16 2 C -0.14 -1.10 5.89 -104.52 -0.62 -1.72 16 3 C -0.07 -0.57 9.69 -39.62 -0.38 -0.96 16 4 C -0.13 -1.22 8.65 -39.39 -0.34 -1.57 16 5 C 0.18 1.61 6.28 -83.71 -0.53 1.09 16 6 N -0.67 -5.50 5.30 -9.87 -0.05 -5.55 16 7 C 0.52 6.03 6.92 -10.99 -0.08 5.96 16 8 O -0.49 -7.48 14.20 -14.05 -0.20 -7.68 16 9 C 0.07 0.84 2.98 -27.88 -0.08 0.75 16 10 H 0.12 1.29 7.16 -51.93 -0.37 0.92 16 11 C -0.17 -1.48 9.50 37.16 0.35 -1.13 16 12 O -0.33 -5.30 9.42 -45.90 -0.43 -5.73 16 13 C 0.48 8.93 7.95 36.00 0.29 9.22 16 14 O -0.49 -9.89 15.08 -18.75 -0.28 -10.17 16 15 C -0.13 -2.58 6.27 36.00 0.23 -2.35 16 16 S -0.06 -1.49 20.57 -107.50 -2.21 -3.70 16 17 C -0.54 -14.92 9.50 30.94 0.29 -14.63 16 18 H 0.08 2.03 7.80 -52.49 -0.41 1.62 16 19 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 20 N -0.87 -25.50 13.22 55.49 0.73 -24.77 16 21 Si 0.92 21.06 29.55 -169.99 -5.02 16.04 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 25 C -0.18 -1.48 9.94 -39.33 -0.39 -1.87 16 26 C 0.12 1.04 7.24 -39.45 -0.29 0.75 16 27 F -0.14 -1.27 16.47 2.25 0.04 -1.23 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 30 H 0.07 0.40 7.63 -51.93 -0.40 0.01 16 31 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 32 H 0.14 1.52 6.41 -52.49 -0.34 1.19 16 33 H 0.42 1.97 8.79 -40.82 -0.36 1.61 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 0.44 8.11 -51.93 -0.42 0.02 16 37 H 0.11 1.97 8.14 -51.91 -0.42 1.55 16 38 H 0.11 2.02 8.14 -51.92 -0.42 1.60 16 39 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 LS Contribution 370.39 15.07 5.58 5.58 Total: -1.00 -34.44 370.39 -7.94 -42.38 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -4.81 Total: -0.38 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -1.28 Total: -4.78 kcal Atomic # 7 Polarization: -31.00 SS G_CDS: 0.68 Total: -30.32 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.91 Total: -23.58 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.04 Total: -1.23 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.70 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.44 -7.94 -42.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046256658.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.173 kcal (2) G-P(sol) polarization free energy of solvation -34.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds