Wall clock time and date at job start Sat Apr 11 2020 06:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 S 2.05002 * 103.00054 * 2 1 4 4 C 1.81400 * 102.99824 * 85.00097 * 3 2 1 5 5 C 1.52998 * 109.47342 * 70.00111 * 4 3 2 6 6 N 1.46497 * 109.47452 * 180.02562 * 5 4 3 7 7 C 1.34775 * 119.99944 * 179.97438 * 6 5 4 8 8 O 1.21348 * 120.00209 * 0.02562 * 7 6 5 9 9 C 1.49371 * 119.99920 * 179.97438 * 7 6 5 10 10 O 1.21362 * 119.99781 * 0.02562 * 9 7 6 11 11 N 1.34775 * 119.99920 * 179.97438 * 9 7 6 12 12 C 1.39117 * 119.99568 * 185.60784 * 11 9 7 13 13 C 1.39708 * 119.57852 * 18.94636 * 12 11 9 14 14 C 1.38649 * 119.49082 * 180.02562 * 13 12 11 15 15 C 1.38354 * 118.67491 * 359.72950 * 14 13 12 16 16 C 1.40597 * 119.12796 * 0.53083 * 15 14 13 17 17 C 1.41346 * 119.78200 * 179.72961 * 16 15 14 18 18 H 1.08000 * 119.99622 * 7.00235 * 17 16 15 19 19 C 1.40024 * 119.99818 * 187.00431 * 17 16 15 20 20 N 1.30740 * 119.99814 * 181.90660 * 19 17 16 21 21 Si 1.86797 * 120.00331 * 1.90544 * 19 17 16 22 22 H 1.48499 * 109.47090 * 179.97438 * 21 19 17 23 23 H 1.48500 * 109.47238 * 300.00224 * 21 19 17 24 24 H 1.48506 * 109.46836 * 59.99940 * 21 19 17 25 25 N 1.31931 * 119.57822 * 198.96091 * 12 11 9 26 26 H 1.09004 * 109.47411 * 59.99843 * 1 2 3 27 27 H 1.09000 * 109.47350 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47398 * 300.00054 * 1 2 3 29 29 H 1.08996 * 109.47154 * 310.00147 * 4 3 2 30 30 H 1.09004 * 109.47101 * 190.00075 * 4 3 2 31 31 H 1.09002 * 109.46888 * 59.99488 * 5 4 3 32 32 H 1.09004 * 109.46993 * 300.00030 * 5 4 3 33 33 H 0.97001 * 119.99523 * 359.97438 * 6 5 4 34 34 H 0.96991 * 120.00352 * 5.61391 * 11 9 7 35 35 H 1.08000 * 120.25769 * 359.97438 * 13 12 11 36 36 H 1.08002 * 120.66570 * 180.02562 * 14 13 12 37 37 H 1.07993 * 120.43559 * 180.28061 * 15 14 13 38 38 H 0.97007 * 120.00076 * 354.82632 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 16 2.2751 1.9975 0.0000 4 6 2.2169 2.4297 1.7608 5 6 3.3986 1.7812 2.4845 6 7 3.3512 2.1298 3.9067 7 6 4.2987 1.6668 4.7459 8 8 5.1914 0.9616 4.3234 9 6 4.2507 2.0226 6.1958 10 8 3.3582 2.7282 6.6182 11 7 5.1980 1.5592 7.0351 12 6 5.0902 1.7924 8.4023 13 6 3.8513 2.1389 8.9472 14 6 3.7461 2.3715 10.3100 15 6 4.8790 2.2466 11.0942 16 6 6.0981 1.9004 10.4853 17 6 7.2653 1.7747 11.2725 18 1 7.1994 1.8324 12.3490 19 6 8.5070 1.5754 10.6567 20 7 9.5812 1.4219 11.3859 21 14 8.6287 1.5289 8.7933 22 1 10.0419 1.3072 8.3949 23 1 7.7869 0.4232 8.2697 24 1 8.1538 2.8200 8.2339 25 7 6.1593 1.6839 9.1677 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.2837 2.0684 2.1929 30 1 2.2731 3.5126 1.8712 31 1 4.3318 2.1425 2.0524 32 1 3.3424 0.6983 2.3742 33 1 2.6379 2.6938 4.2442 34 1 5.9548 1.0632 6.6859 35 1 2.9824 2.2258 8.3118 36 1 2.7977 2.6401 10.7514 37 1 4.8285 2.4168 12.1595 38 1 9.5313 1.5206 12.3497 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890271393.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:35 Heat of formation + Delta-G solvation = -34.031517 kcal Electronic energy + Delta-G solvation = -23777.282706 eV Core-core repulsion = 20065.425278 eV Total energy + Delta-G solvation = -3711.857428 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.93213 -39.31207 -38.01828 -36.05142 -34.70597 -33.56160 -31.35376 -31.19144 -29.75788 -29.58056 -26.07377 -25.20193 -23.38567 -21.96588 -21.56163 -20.15639 -19.55244 -18.93589 -18.22240 -17.16122 -16.64087 -16.34052 -16.18203 -15.70704 -15.47648 -15.17969 -14.72661 -14.51278 -14.26365 -14.18928 -13.92823 -13.61180 -13.58143 -13.14587 -12.78614 -12.77654 -12.38608 -12.29143 -12.24808 -12.03061 -11.76872 -10.98716 -10.86354 -10.79820 -10.43468 -10.13476 -9.69876 -9.59259 -9.37487 -9.21198 -8.92707 -8.71974 -8.66242 -7.87659 -7.53590 -7.30489 -4.85550 -1.20231 1.02870 1.21015 1.46764 2.27793 2.45201 2.54917 3.24281 3.53431 3.59104 3.65477 3.96965 4.02041 4.20666 4.35171 4.39929 4.48764 4.53791 4.58041 4.75148 5.10642 5.18764 5.33432 5.43949 5.72290 5.83157 5.92078 6.28742 6.33327 6.41900 6.77027 6.96365 7.05250 7.32647 7.39468 7.45701 7.62107 7.64406 7.97322 8.05972 8.25960 8.56124 9.29308 9.94809 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.022142 B = 0.002210 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.262312 B =12663.919993 C =13443.922192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.140 6.140 3 S -0.119 6.119 4 C -0.121 4.121 5 C 0.120 3.880 6 N -0.703 5.703 7 C 0.515 3.485 8 O -0.508 6.508 9 C 0.509 3.491 10 O -0.495 6.495 11 N -0.622 5.622 12 C 0.382 3.618 13 C -0.310 4.310 14 C -0.035 4.035 15 C -0.270 4.270 16 C 0.272 3.728 17 C -0.471 4.471 18 H 0.085 0.915 19 C 0.043 3.957 20 N -0.801 5.801 21 Si 1.154 2.846 22 H -0.330 1.330 23 H -0.283 1.283 24 H -0.293 1.293 25 N -0.594 5.594 26 H 0.089 0.911 27 H 0.112 0.888 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.126 0.874 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.414 0.586 34 H 0.420 0.580 35 H 0.138 0.862 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.149 0.340 -20.832 26.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S -0.021 6.021 3 S 0.001 5.999 4 C -0.276 4.276 5 C -0.005 4.005 6 N -0.359 5.359 7 C 0.294 3.706 8 O -0.383 6.383 9 C 0.290 3.710 10 O -0.370 6.370 11 N -0.268 5.268 12 C 0.152 3.848 13 C -0.335 4.335 14 C -0.059 4.059 15 C -0.292 4.292 16 C 0.148 3.852 17 C -0.503 4.503 18 H 0.103 0.897 19 C -0.179 4.179 20 N -0.423 5.423 21 Si 0.989 3.011 22 H -0.263 1.263 23 H -0.211 1.211 24 H -0.221 1.221 25 N -0.320 5.320 26 H 0.108 0.892 27 H 0.130 0.870 28 H 0.103 0.897 29 H 0.118 0.882 30 H 0.144 0.856 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.251 0.749 34 H 0.258 0.742 35 H 0.156 0.844 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.340 -0.386 -23.254 27.323 hybrid contribution -2.949 0.780 2.969 4.257 sum -17.290 0.394 -20.285 26.656 Atomic orbital electron populations 1.24059 0.93969 1.07149 1.06076 1.89664 1.10552 1.07265 1.94646 1.89548 1.88309 1.11660 1.10407 1.24244 1.02151 1.05992 0.95219 1.21829 0.98249 1.01211 0.79229 1.45680 1.29418 1.52612 1.08164 1.20046 0.82554 0.80965 0.87008 1.90806 1.34145 1.35622 1.77678 1.19877 0.83077 0.81324 0.86753 1.90693 1.34687 1.34814 1.76773 1.42936 1.25429 1.52843 1.05625 1.18018 0.90727 0.94413 0.81671 1.21455 0.97021 1.18942 0.96039 1.20918 0.97137 0.94686 0.93121 1.21654 0.94018 1.14118 0.99450 1.18280 0.93233 0.87638 0.86052 1.20760 0.91908 1.42241 0.95395 0.89675 1.27792 0.90926 0.88499 1.10644 1.70645 1.31575 1.30448 1.09608 0.81837 0.70503 0.78804 0.69966 1.26288 1.21058 1.22141 1.65961 1.28249 1.30564 1.07195 0.89224 0.86958 0.89707 0.88197 0.85625 0.89409 0.89793 0.74946 0.74200 0.84434 0.87355 0.87432 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.57 10.76 101.05 1.09 0.52 16 2 S -0.14 -1.02 22.43 -89.68 -2.01 -3.03 16 3 S -0.12 -0.83 22.25 -89.68 -2.00 -2.83 16 4 C -0.12 -0.67 6.06 37.16 0.23 -0.44 16 5 C 0.12 0.98 5.63 -4.04 -0.02 0.96 16 6 N -0.70 -6.86 5.55 -60.76 -0.34 -7.20 16 7 C 0.51 7.13 7.89 -11.62 -0.09 7.04 16 8 O -0.51 -8.19 16.48 5.50 0.09 -8.10 16 9 C 0.51 8.44 7.73 -11.62 -0.09 8.35 16 10 O -0.50 -8.61 13.27 5.49 0.07 -8.53 16 11 N -0.62 -12.03 5.40 -11.83 -0.06 -12.09 16 12 C 0.38 8.69 7.50 -155.09 -1.16 7.52 16 13 C -0.31 -6.67 8.83 -38.88 -0.34 -7.01 16 14 C -0.03 -0.72 10.15 -39.39 -0.40 -1.12 16 15 C -0.27 -6.25 9.83 -38.65 -0.38 -6.63 16 16 C 0.27 7.04 6.39 -85.00 -0.54 6.50 16 17 C -0.47 -12.68 9.58 -37.73 -0.36 -13.04 16 18 H 0.09 2.27 8.05 -52.49 -0.42 1.84 16 19 C 0.04 1.17 5.52 -17.35 -0.10 1.07 16 20 N -0.80 -21.69 13.65 55.55 0.76 -20.93 16 21 Si 1.15 28.42 25.53 -169.99 -4.34 24.08 16 22 H -0.33 -8.05 7.11 56.52 0.40 -7.64 16 23 H -0.28 -6.78 6.70 56.52 0.38 -6.40 16 24 H -0.29 -7.30 7.10 56.52 0.40 -6.90 16 25 N -0.59 -15.03 4.59 -10.28 -0.05 -15.08 16 26 H 0.09 0.31 8.14 -51.92 -0.42 -0.11 16 27 H 0.11 0.34 8.14 -51.92 -0.42 -0.08 16 28 H 0.08 0.29 8.14 -51.92 -0.42 -0.13 16 29 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.13 0.52 8.14 -51.92 -0.42 0.10 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.78 7.74 -51.93 -0.40 0.38 16 33 H 0.41 3.30 7.94 -40.82 -0.32 2.97 16 34 H 0.42 7.82 8.31 -40.82 -0.34 7.48 16 35 H 0.14 2.79 5.33 -52.50 -0.28 2.51 16 36 H 0.11 1.89 8.06 -52.49 -0.42 1.47 16 37 H 0.11 2.30 8.06 -52.49 -0.42 1.88 16 38 H 0.28 7.31 8.72 -40.82 -0.36 6.96 16 LS Contribution 356.99 15.07 5.38 5.38 Total: -1.00 -30.93 356.99 -9.00 -39.93 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -4.32 Total: 4.68 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -2.18 Total: 3.72 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: 0.31 Total: -55.30 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: 0.16 Total: -16.63 kcal Atomic # 14 Polarization: 28.42 SS G_CDS: -4.34 Total: 24.08 kcal Atomic # 16 Polarization: -1.86 SS G_CDS: -4.01 Total: -5.86 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.93 -9.00 -39.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890271393.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.900 kcal (2) G-P(sol) polarization free energy of solvation -30.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds