Wall clock time and date at job start Sat Apr 11 2020 06:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 S 2.05002 * 103.00054 * 2 1 4 4 C 1.81400 * 102.99824 * 85.00097 * 3 2 1 5 5 C 1.52998 * 109.47342 * 70.00111 * 4 3 2 6 6 N 1.46497 * 109.47452 * 180.02562 * 5 4 3 7 7 C 1.34775 * 119.99944 * 179.97438 * 6 5 4 8 8 O 1.21348 * 120.00209 * 0.02562 * 7 6 5 9 9 C 1.49371 * 119.99920 * 179.97438 * 7 6 5 10 10 O 1.21362 * 119.99781 * 0.02562 * 9 7 6 11 11 N 1.34775 * 119.99920 * 179.97438 * 9 7 6 12 12 C 1.39117 * 119.99568 * 185.60784 * 11 9 7 13 13 C 1.39708 * 119.57852 * 18.94636 * 12 11 9 14 14 C 1.38649 * 119.49082 * 180.02562 * 13 12 11 15 15 C 1.38354 * 118.67491 * 359.72950 * 14 13 12 16 16 C 1.40597 * 119.12796 * 0.53083 * 15 14 13 17 17 C 1.41346 * 119.78200 * 179.72961 * 16 15 14 18 18 H 1.08000 * 119.99622 * 7.00235 * 17 16 15 19 19 C 1.40024 * 119.99818 * 187.00431 * 17 16 15 20 20 N 1.30740 * 119.99814 * 181.90660 * 19 17 16 21 21 Si 1.86797 * 120.00331 * 1.90544 * 19 17 16 22 22 H 1.48499 * 109.47090 * 179.97438 * 21 19 17 23 23 H 1.48500 * 109.47238 * 300.00224 * 21 19 17 24 24 H 1.48506 * 109.46836 * 59.99940 * 21 19 17 25 25 N 1.31931 * 119.57822 * 198.96091 * 12 11 9 26 26 H 1.09004 * 109.47411 * 59.99843 * 1 2 3 27 27 H 1.09000 * 109.47350 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47398 * 300.00054 * 1 2 3 29 29 H 1.08996 * 109.47154 * 310.00147 * 4 3 2 30 30 H 1.09004 * 109.47101 * 190.00075 * 4 3 2 31 31 H 1.09002 * 109.46888 * 59.99488 * 5 4 3 32 32 H 1.09004 * 109.46993 * 300.00030 * 5 4 3 33 33 H 0.97001 * 119.99523 * 359.97438 * 6 5 4 34 34 H 0.96991 * 120.00352 * 5.61391 * 11 9 7 35 35 H 1.08000 * 120.25769 * 359.97438 * 13 12 11 36 36 H 1.08002 * 120.66570 * 180.02562 * 14 13 12 37 37 H 1.07993 * 120.43559 * 180.28061 * 15 14 13 38 38 H 0.97007 * 120.00076 * 354.82632 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 16 2.2751 1.9975 0.0000 4 6 2.2169 2.4297 1.7608 5 6 3.3986 1.7812 2.4845 6 7 3.3512 2.1298 3.9067 7 6 4.2987 1.6668 4.7459 8 8 5.1914 0.9616 4.3234 9 6 4.2507 2.0226 6.1958 10 8 3.3582 2.7282 6.6182 11 7 5.1980 1.5592 7.0351 12 6 5.0902 1.7924 8.4023 13 6 3.8513 2.1389 8.9472 14 6 3.7461 2.3715 10.3100 15 6 4.8790 2.2466 11.0942 16 6 6.0981 1.9004 10.4853 17 6 7.2653 1.7747 11.2725 18 1 7.1994 1.8324 12.3490 19 6 8.5070 1.5754 10.6567 20 7 9.5812 1.4219 11.3859 21 14 8.6287 1.5289 8.7933 22 1 10.0419 1.3072 8.3949 23 1 7.7869 0.4232 8.2697 24 1 8.1538 2.8200 8.2339 25 7 6.1593 1.6839 9.1677 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.2837 2.0684 2.1929 30 1 2.2731 3.5126 1.8712 31 1 4.3318 2.1425 2.0524 32 1 3.3424 0.6983 2.3742 33 1 2.6379 2.6938 4.2442 34 1 5.9548 1.0632 6.6859 35 1 2.9824 2.2258 8.3118 36 1 2.7977 2.6401 10.7514 37 1 4.8285 2.4168 12.1595 38 1 9.5313 1.5206 12.3497 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890271393.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:34 Heat of formation + Delta-G solvation = -53.534158 kcal Electronic energy + Delta-G solvation = -23778.128404 eV Core-core repulsion = 20065.425278 eV Total energy + Delta-G solvation = -3712.703126 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.28034 -40.75506 -39.54495 -37.08149 -36.23279 -35.38963 -33.05839 -32.08725 -31.50768 -29.89528 -27.64905 -26.68210 -24.39082 -23.70323 -22.92712 -21.54177 -20.58735 -20.09320 -19.82568 -18.52795 -17.91235 -17.40807 -17.16033 -16.99009 -16.54404 -16.41144 -16.19605 -15.64710 -15.47417 -15.24599 -15.02904 -14.80589 -14.53608 -14.36852 -14.27158 -14.01923 -13.75981 -13.37146 -13.30968 -13.04832 -12.81868 -12.73925 -12.33162 -12.30712 -11.87066 -11.64141 -11.33200 -11.19064 -10.76773 -10.48562 -10.45848 -9.79844 -9.42725 -9.32695 -9.29470 -9.25874 -6.84898 -1.72189 -0.11168 0.50003 0.67036 0.79828 1.01524 1.21710 1.56217 1.65947 1.94509 2.00738 2.39413 2.41627 2.63547 3.19276 3.44923 3.51694 3.76443 4.01003 4.21557 4.27659 4.29896 4.30350 4.56566 4.56790 4.64874 4.66721 4.69690 4.83920 4.95045 5.21898 5.31272 5.37746 5.59683 5.65857 5.85059 5.92380 6.15785 6.33218 6.49662 6.63234 6.72794 7.43167 7.93721 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.022142 B = 0.002210 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.262312 B =12663.919993 C =13443.922192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.189 6.189 3 S -0.132 6.132 4 C -0.109 4.109 5 C 0.120 3.880 6 N -0.677 5.677 7 C 0.522 3.478 8 O -0.534 6.534 9 C 0.515 3.485 10 O -0.499 6.499 11 N -0.631 5.631 12 C 0.368 3.632 13 C -0.298 4.298 14 C -0.024 4.024 15 C -0.283 4.283 16 C 0.257 3.743 17 C -0.504 4.504 18 H 0.074 0.926 19 C 0.017 3.983 20 N -0.827 5.827 21 Si 1.183 2.817 22 H -0.330 1.330 23 H -0.278 1.278 24 H -0.300 1.300 25 N -0.613 5.613 26 H 0.096 0.904 27 H 0.124 0.876 28 H 0.096 0.904 29 H 0.118 0.882 30 H 0.146 0.854 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.426 0.574 34 H 0.422 0.578 35 H 0.157 0.843 36 H 0.153 0.847 37 H 0.120 0.880 38 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.434 1.052 -22.550 30.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 S -0.070 6.070 3 S -0.012 6.012 4 C -0.263 4.263 5 C -0.005 4.005 6 N -0.333 5.333 7 C 0.301 3.699 8 O -0.410 6.410 9 C 0.296 3.704 10 O -0.374 6.374 11 N -0.277 5.277 12 C 0.137 3.863 13 C -0.322 4.322 14 C -0.048 4.048 15 C -0.305 4.305 16 C 0.132 3.868 17 C -0.537 4.537 18 H 0.092 0.908 19 C -0.200 4.200 20 N -0.450 5.450 21 Si 1.017 2.983 22 H -0.263 1.263 23 H -0.205 1.205 24 H -0.229 1.229 25 N -0.339 5.339 26 H 0.115 0.885 27 H 0.142 0.858 28 H 0.115 0.885 29 H 0.136 0.864 30 H 0.164 0.836 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.265 0.735 34 H 0.260 0.740 35 H 0.175 0.825 36 H 0.170 0.830 37 H 0.138 0.862 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.688 0.342 -25.017 30.640 hybrid contribution -2.245 0.612 3.363 4.090 sum -19.933 0.954 -21.654 29.447 Atomic orbital electron populations 1.24102 0.90534 1.08171 1.07034 1.89774 1.14196 1.08103 1.94951 1.89593 1.88986 1.11045 1.11616 1.24218 1.01534 1.06874 0.93666 1.21934 0.99464 1.01046 0.78009 1.45599 1.28174 1.51131 1.08376 1.19529 0.83236 0.81242 0.85914 1.90815 1.35481 1.37153 1.77574 1.20348 0.82014 0.80338 0.87666 1.90661 1.34627 1.34785 1.77283 1.43025 1.26476 1.53538 1.04701 1.18390 0.90687 0.94198 0.82979 1.21874 0.97007 1.16687 0.96670 1.21388 0.98155 0.92590 0.92674 1.21848 0.93831 1.14317 1.00486 1.18480 0.93998 0.87768 0.86600 1.20735 0.92753 1.45082 0.95100 0.90828 1.28382 0.91065 0.88307 1.12293 1.70655 1.31827 1.32922 1.09645 0.81425 0.70304 0.78472 0.68103 1.26328 1.20533 1.22868 1.65870 1.29725 1.31013 1.07328 0.88464 0.85780 0.88547 0.86353 0.83615 0.89945 0.90651 0.73519 0.74020 0.82549 0.82988 0.86220 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 10.76 113.37 1.22 0.50 16 2 S -0.19 -2.51 22.43 -20.03 -0.45 -2.96 16 3 S -0.13 -1.61 22.25 -20.03 -0.45 -2.06 16 4 C -0.11 -0.85 6.06 71.98 0.44 -0.41 16 5 C 0.12 1.68 5.63 86.38 0.49 2.17 16 6 N -0.68 -11.23 5.55 -464.51 -2.58 -13.81 16 7 C 0.52 13.33 7.89 87.24 0.69 14.01 16 8 O -0.53 -16.48 16.48 -3.24 -0.05 -16.53 16 9 C 0.51 15.84 7.73 87.24 0.67 16.52 16 10 O -0.50 -15.71 13.27 -3.29 -0.04 -15.75 16 11 N -0.63 -23.43 5.40 -309.70 -1.67 -25.11 16 12 C 0.37 16.11 7.50 133.30 1.00 17.11 16 13 C -0.30 -11.88 8.83 22.72 0.20 -11.68 16 14 C -0.02 -0.92 10.15 22.40 0.23 -0.70 16 15 C -0.28 -12.65 9.83 22.87 0.22 -12.42 16 16 C 0.26 13.29 6.39 40.20 0.26 13.55 16 17 C -0.50 -27.86 9.58 23.47 0.22 -27.63 16 18 H 0.07 4.09 8.05 -2.91 -0.02 4.06 16 19 C 0.02 0.94 5.52 85.29 0.47 1.41 16 20 N -0.83 -46.22 13.65 21.84 0.30 -45.92 16 21 Si 1.18 58.70 25.53 68.60 1.75 60.45 16 22 H -0.33 -16.10 7.11 99.48 0.71 -15.39 16 23 H -0.28 -13.32 6.70 99.48 0.67 -12.66 16 24 H -0.30 -14.99 7.10 99.48 0.71 -14.28 16 25 N -0.61 -30.73 4.59 -186.42 -0.85 -31.58 16 26 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.12 0.45 8.14 -2.39 -0.02 0.44 16 28 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.15 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.08 1.26 7.74 -2.39 -0.02 1.25 16 33 H 0.43 5.16 7.94 -92.71 -0.74 4.43 16 34 H 0.42 15.37 8.31 -92.72 -0.77 14.60 16 35 H 0.16 5.68 5.33 -3.17 -0.02 5.66 16 36 H 0.15 4.51 8.06 -2.91 -0.02 4.49 16 37 H 0.12 4.97 8.06 -2.91 -0.02 4.94 16 38 H 0.28 15.19 8.72 -92.70 -0.81 14.38 16 Total: -1.00 -67.35 356.99 1.61 -65.74 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -0.46 Total: 15.10 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: 6.11 Total: 12.41 kcal Atomic # 7 Polarization: -111.61 SS G_CDS: -4.81 Total: -116.41 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -0.10 Total: -32.28 kcal Atomic # 14 Polarization: 58.70 SS G_CDS: 1.75 Total: 60.45 kcal Atomic # 16 Polarization: -4.13 SS G_CDS: -0.90 Total: -5.02 kcal Total: -67.35 1.61 -65.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890271393.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.211 kcal (2) G-P(sol) polarization free energy of solvation -67.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds