Wall clock time and date at job start Sat Apr 11 2020 06:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42099 * 110.54234 * 2 1 4 4 O 1.42105 * 110.54102 * 223.25200 * 2 1 3 5 5 C 1.76195 * 104.45113 * 111.62729 * 2 1 3 6 6 C 1.35162 * 125.48200 * 89.71315 * 5 2 1 7 7 C 1.40311 * 107.20139 * 179.85153 * 6 5 2 8 8 C 1.37949 * 106.53341 * 0.40669 * 7 6 5 9 9 C 1.41610 * 126.10322 * 179.72579 * 8 7 6 10 10 C 1.35623 * 119.99733 * 218.71472 * 9 8 7 11 11 C 1.41556 * 120.00358 * 10.02305 * 10 9 8 12 12 O 1.21786 * 119.99689 * 6.46152 * 11 10 9 13 13 N 1.34776 * 120.00452 * 186.46525 * 11 10 9 14 14 C 1.47064 * 136.05052 * 359.62860 * 13 11 10 15 15 C 1.53760 * 87.88382 * 152.96352 * 14 13 11 16 16 O 1.42901 * 114.39480 * 272.67230 * 15 14 13 17 17 C 1.50703 * 114.26704 * 139.78764 * 15 14 13 18 18 H 1.07994 * 120.00588 * 266.47698 * 17 15 14 19 19 C 1.37887 * 119.99528 * 86.47409 * 17 15 14 20 20 N 1.31515 * 119.99556 * 179.97438 * 19 17 15 21 21 Si 1.86797 * 120.00189 * 0.02562 * 19 17 15 22 22 H 1.48502 * 109.46676 * 90.00193 * 21 19 17 23 23 H 1.48500 * 109.46682 * 209.99602 * 21 19 17 24 24 H 1.48493 * 109.47195 * 330.00150 * 21 19 17 25 25 C 1.47063 * 136.06145 * 179.97438 * 13 11 10 26 26 O 1.34017 * 125.48273 * 270.02815 * 5 2 1 27 27 H 1.08999 * 109.46930 * 308.37232 * 1 2 3 28 28 H 1.09000 * 109.47099 * 68.37497 * 1 2 3 29 29 H 1.08998 * 109.46905 * 188.37079 * 1 2 3 30 30 H 1.07996 * 126.39548 * 359.97438 * 6 5 2 31 31 H 1.08001 * 126.73043 * 180.12544 * 7 6 5 32 32 H 1.07998 * 120.00228 * 38.72297 * 9 8 7 33 33 H 1.08002 * 120.00004 * 190.01782 * 10 9 8 34 34 H 1.08999 * 113.46625 * 267.68999 * 14 13 11 35 35 H 1.08993 * 113.47273 * 38.13748 * 14 13 11 36 36 H 0.96700 * 114.00085 * 273.58453 * 16 15 14 37 37 H 0.96995 * 120.00068 * 180.02562 * 20 19 17 38 38 H 1.09004 * 113.46814 * 321.86994 * 25 13 11 39 39 H 1.09001 * 113.46652 * 92.24592 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9118 5 6 2.2537 -0.6289 1.5861 6 6 2.4442 -1.9325 1.8880 7 6 2.7821 -1.9984 3.2482 8 6 2.7712 -0.7016 3.7186 9 6 3.0494 -0.2931 5.0457 10 6 2.3308 0.7083 5.6116 11 6 1.1719 1.2008 4.9650 12 8 0.7530 0.6496 3.9630 13 7 0.5320 2.2796 5.4581 14 6 0.7107 3.1849 6.6032 15 6 -0.0043 4.2713 5.7830 16 8 0.8577 5.0361 4.9380 17 6 -0.9626 5.1187 6.5797 18 1 -2.0084 4.8533 6.6257 19 6 -0.5040 6.2329 7.2501 20 7 -1.3403 6.9727 7.9450 21 14 1.3048 6.6924 7.1702 22 1 1.5348 7.5983 6.0162 23 1 1.6964 7.3813 8.4261 24 1 2.1210 5.4629 7.0047 25 6 -0.6555 3.0658 5.0915 26 8 2.4473 0.1079 2.6887 27 1 -0.3633 0.6379 0.8057 28 1 -0.3633 0.3787 -0.9553 29 1 -0.3633 -1.0167 0.1496 30 1 2.3550 -2.7672 1.2086 31 1 3.0027 -2.8899 3.8165 32 1 3.8339 -0.7787 5.6070 33 1 2.6428 1.1299 6.5557 34 1 0.1578 2.8767 7.4906 35 1 1.7546 3.4158 6.8154 36 1 1.2664 5.7949 5.3765 37 1 -1.0179 7.7568 8.4163 38 1 -0.7753 3.1951 4.0158 39 1 -1.5689 2.7256 5.5792 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118914339.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:47 Heat of formation + Delta-G solvation = -40.054408 kcal Electronic energy + Delta-G solvation = -27820.414584 eV Core-core repulsion = 23633.250361 eV Total energy + Delta-G solvation = -4187.164223 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.54055 -40.06624 -38.10720 -37.27525 -36.12969 -34.70952 -34.11520 -33.07065 -32.61672 -30.09185 -29.66362 -28.54166 -26.03379 -25.37090 -23.83483 -22.03825 -21.38880 -19.94899 -19.36843 -18.68101 -18.04708 -17.55729 -17.11081 -16.59146 -16.47033 -15.89112 -15.85261 -15.70560 -14.99041 -14.40091 -14.23432 -13.92909 -13.71671 -13.54259 -13.39614 -13.33041 -13.20203 -13.01583 -12.77184 -12.50826 -12.37000 -12.28219 -12.22251 -12.16374 -11.57847 -11.24215 -11.15477 -11.01245 -10.63237 -10.30517 -10.18634 -10.11976 -9.87731 -9.37808 -9.14140 -8.78075 -8.41484 -8.10033 -6.49310 -4.55939 -0.21622 0.37504 1.56112 2.41941 2.49659 2.95232 2.97462 3.10228 3.14155 3.36093 3.54934 3.68032 3.96504 4.13169 4.51611 4.56322 4.62357 4.71328 4.77847 4.90484 4.99366 5.18810 5.38500 5.40445 5.46793 5.53671 5.56061 5.71071 5.86532 5.97899 6.01814 6.15253 6.23967 6.29371 6.40992 6.51231 6.86612 7.11238 7.94030 8.17749 8.42213 8.46118 8.54247 9.07901 10.62723 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.017757 B = 0.003221 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.479784 B = 8689.849913 C = 9411.002124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.640 4.640 2 S 2.530 3.470 3 O -0.922 6.922 4 O -0.928 6.928 5 C -0.558 4.558 6 C -0.100 4.100 7 C -0.214 4.214 8 C 0.082 3.918 9 C -0.038 4.038 10 C -0.154 4.154 11 C 0.556 3.444 12 O -0.549 6.549 13 N -0.625 5.625 14 C 0.057 3.943 15 C 0.196 3.804 16 O -0.548 6.548 17 C -0.535 4.535 18 H 0.093 0.907 19 C 0.081 3.919 20 N -0.874 5.874 21 Si 0.860 3.140 22 H -0.265 1.265 23 H -0.283 1.283 24 H -0.258 1.258 25 C 0.120 3.880 26 O -0.072 6.072 27 H 0.142 0.858 28 H 0.135 0.865 29 H 0.132 0.868 30 H 0.163 0.837 31 H 0.158 0.842 32 H 0.162 0.838 33 H 0.141 0.859 34 H 0.097 0.903 35 H 0.066 0.934 36 H 0.352 0.648 37 H 0.272 0.728 38 H 0.074 0.926 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.544 -16.148 -6.883 18.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.792 4.792 2 S 2.705 3.295 3 O -0.919 6.919 4 O -0.926 6.926 5 C -0.690 4.690 6 C -0.120 4.120 7 C -0.234 4.234 8 C 0.026 3.974 9 C -0.058 4.058 10 C -0.175 4.175 11 C 0.348 3.652 12 O -0.431 6.431 13 N -0.358 5.358 14 C -0.066 4.066 15 C 0.155 3.845 16 O -0.359 6.359 17 C -0.572 4.572 18 H 0.111 0.889 19 C -0.125 4.125 20 N -0.509 5.509 21 Si 0.688 3.312 22 H -0.191 1.191 23 H -0.209 1.209 24 H -0.183 1.183 25 C -0.002 4.002 26 O 0.037 5.963 27 H 0.160 0.840 28 H 0.153 0.847 29 H 0.151 0.849 30 H 0.180 0.820 31 H 0.176 0.824 32 H 0.180 0.820 33 H 0.159 0.841 34 H 0.115 0.885 35 H 0.084 0.916 36 H 0.205 0.795 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.759 -16.284 -8.368 19.516 hybrid contribution 0.625 0.192 1.539 1.672 sum 7.384 -16.092 -6.829 18.977 Atomic orbital electron populations 1.30139 1.24167 1.12464 1.12387 1.04774 0.78328 0.74386 0.72020 1.93617 1.77466 1.35808 1.85040 1.93612 1.78331 1.62663 1.57967 1.35203 1.22772 1.00591 1.10463 1.21645 0.98399 0.95468 0.96507 1.22249 1.09452 0.96674 0.95016 1.20223 0.98237 0.89494 0.89403 1.20647 0.99090 0.96269 0.89814 1.22504 0.95700 0.96898 1.02378 1.16578 0.84903 0.79048 0.84655 1.90782 1.68797 1.57715 1.25815 1.49672 1.29368 1.27010 1.29726 1.24605 1.01606 0.89286 0.91080 1.20259 0.87916 0.88378 0.87921 1.86498 1.64813 1.43206 1.41421 1.21130 0.96480 1.09870 1.29767 0.88907 1.25008 0.97630 0.95626 0.94240 1.69845 1.34785 1.15981 1.30314 0.87314 0.85638 0.79869 0.78351 1.19128 1.20943 1.18343 1.23172 0.88518 0.87159 1.01321 1.84461 1.63135 1.34333 1.14409 0.83961 0.84692 0.84941 0.81955 0.82441 0.82040 0.84114 0.88488 0.91600 0.79538 0.91769 0.90801 0.88657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -5.42 10.80 101.05 1.09 -4.32 16 2 S 2.53 30.61 5.94 -107.50 -0.64 29.97 16 3 O -0.92 -15.18 17.95 -58.51 -1.05 -16.23 16 4 O -0.93 -12.18 17.70 -57.54 -1.02 -13.20 16 5 C -0.56 -8.00 6.96 29.64 0.21 -7.79 16 6 C -0.10 -1.22 10.50 -39.90 -0.42 -1.64 16 7 C -0.21 -2.59 10.90 -38.91 -0.42 -3.02 16 8 C 0.08 1.19 5.34 -38.40 -0.21 0.99 16 9 C -0.04 -0.46 9.95 -39.23 -0.39 -0.85 16 10 C -0.15 -2.16 9.70 -39.25 -0.38 -2.54 16 11 C 0.56 10.22 7.59 -15.00 -0.11 10.10 16 12 O -0.55 -11.04 13.22 -19.71 -0.26 -11.30 16 13 N -0.63 -11.99 3.69 -188.54 -0.69 -12.69 16 14 C 0.06 1.09 7.11 -8.37 -0.06 1.03 16 15 C 0.20 4.34 1.10 -91.13 -0.10 4.24 16 16 O -0.55 -12.85 13.33 -35.23 -0.47 -13.32 16 17 C -0.53 -13.35 9.28 -34.44 -0.32 -13.67 16 18 H 0.09 2.47 8.06 -52.49 -0.42 2.05 16 19 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 20 N -0.87 -23.84 13.96 55.43 0.77 -23.07 16 21 Si 0.86 18.49 24.42 -169.99 -4.15 14.33 16 22 H -0.26 -5.62 7.06 56.52 0.40 -5.22 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.26 -5.18 5.50 56.52 0.31 -4.87 16 25 C 0.12 2.42 8.02 -8.52 -0.07 2.35 16 26 O -0.07 -1.25 7.80 -20.91 -0.16 -1.42 16 27 H 0.14 1.38 8.14 -51.92 -0.42 0.96 16 28 H 0.13 0.80 8.14 -51.92 -0.42 0.38 16 29 H 0.13 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 31 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.14 1.59 7.89 -52.49 -0.41 1.17 16 34 H 0.10 1.70 8.10 -51.93 -0.42 1.28 16 35 H 0.07 1.18 7.15 -51.93 -0.37 0.81 16 36 H 0.35 7.86 3.16 45.56 0.14 8.00 16 37 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.10 1.75 8.10 -51.93 -0.42 1.33 16 LS Contribution 347.89 15.07 5.24 5.24 Total: -1.00 -36.00 347.89 -7.80 -43.80 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -4.09 Total: 11.02 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -1.28 Total: -13.16 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: 0.08 Total: -35.75 kcal Atomic # 8 Polarization: -52.50 SS G_CDS: -2.96 Total: -55.46 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -4.15 Total: 14.33 kcal Atomic # 16 Polarization: 30.61 SS G_CDS: -0.64 Total: 29.97 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -36.00 -7.80 -43.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118914339.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.748 kcal (2) G-P(sol) polarization free energy of solvation -35.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds