Wall clock time and date at job start Sat Apr 11 2020 06:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42099 * 110.54234 * 2 1 4 4 O 1.42105 * 110.54102 * 223.25200 * 2 1 3 5 5 C 1.76195 * 104.45113 * 111.62729 * 2 1 3 6 6 C 1.35162 * 125.48200 * 89.71315 * 5 2 1 7 7 C 1.40311 * 107.20139 * 179.85153 * 6 5 2 8 8 C 1.37949 * 106.53341 * 0.40669 * 7 6 5 9 9 C 1.41610 * 126.10322 * 179.72579 * 8 7 6 10 10 C 1.35623 * 119.99733 * 218.71472 * 9 8 7 11 11 C 1.41556 * 120.00358 * 10.02305 * 10 9 8 12 12 O 1.21786 * 119.99689 * 6.46152 * 11 10 9 13 13 N 1.34776 * 120.00452 * 186.46525 * 11 10 9 14 14 C 1.47064 * 136.05052 * 359.62860 * 13 11 10 15 15 C 1.53760 * 87.88382 * 152.96352 * 14 13 11 16 16 O 1.42901 * 114.39480 * 272.67230 * 15 14 13 17 17 C 1.50703 * 114.26704 * 139.78764 * 15 14 13 18 18 H 1.07994 * 120.00588 * 266.47698 * 17 15 14 19 19 C 1.37887 * 119.99528 * 86.47409 * 17 15 14 20 20 N 1.31515 * 119.99556 * 179.97438 * 19 17 15 21 21 Si 1.86797 * 120.00189 * 0.02562 * 19 17 15 22 22 H 1.48502 * 109.46676 * 90.00193 * 21 19 17 23 23 H 1.48500 * 109.46682 * 209.99602 * 21 19 17 24 24 H 1.48493 * 109.47195 * 330.00150 * 21 19 17 25 25 C 1.47063 * 136.06145 * 179.97438 * 13 11 10 26 26 O 1.34017 * 125.48273 * 270.02815 * 5 2 1 27 27 H 1.08999 * 109.46930 * 308.37232 * 1 2 3 28 28 H 1.09000 * 109.47099 * 68.37497 * 1 2 3 29 29 H 1.08998 * 109.46905 * 188.37079 * 1 2 3 30 30 H 1.07996 * 126.39548 * 359.97438 * 6 5 2 31 31 H 1.08001 * 126.73043 * 180.12544 * 7 6 5 32 32 H 1.07998 * 120.00228 * 38.72297 * 9 8 7 33 33 H 1.08002 * 120.00004 * 190.01782 * 10 9 8 34 34 H 1.08999 * 113.46625 * 267.68999 * 14 13 11 35 35 H 1.08993 * 113.47273 * 38.13748 * 14 13 11 36 36 H 0.96700 * 114.00085 * 273.58453 * 16 15 14 37 37 H 0.96995 * 120.00068 * 180.02562 * 20 19 17 38 38 H 1.09004 * 113.46814 * 321.86994 * 25 13 11 39 39 H 1.09001 * 113.46652 * 92.24592 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9118 5 6 2.2537 -0.6289 1.5861 6 6 2.4442 -1.9325 1.8880 7 6 2.7821 -1.9984 3.2482 8 6 2.7712 -0.7016 3.7186 9 6 3.0494 -0.2931 5.0457 10 6 2.3308 0.7083 5.6116 11 6 1.1719 1.2008 4.9650 12 8 0.7530 0.6496 3.9630 13 7 0.5320 2.2796 5.4581 14 6 0.7107 3.1849 6.6032 15 6 -0.0043 4.2713 5.7830 16 8 0.8577 5.0361 4.9380 17 6 -0.9626 5.1187 6.5797 18 1 -2.0084 4.8533 6.6257 19 6 -0.5040 6.2329 7.2501 20 7 -1.3403 6.9727 7.9450 21 14 1.3048 6.6924 7.1702 22 1 1.5348 7.5983 6.0162 23 1 1.6964 7.3813 8.4261 24 1 2.1210 5.4629 7.0047 25 6 -0.6555 3.0658 5.0915 26 8 2.4473 0.1079 2.6887 27 1 -0.3633 0.6379 0.8057 28 1 -0.3633 0.3787 -0.9553 29 1 -0.3633 -1.0167 0.1496 30 1 2.3550 -2.7672 1.2086 31 1 3.0027 -2.8899 3.8165 32 1 3.8339 -0.7787 5.6070 33 1 2.6428 1.1299 6.5557 34 1 0.1578 2.8767 7.4906 35 1 1.7546 3.4158 6.8154 36 1 1.2664 5.7949 5.3765 37 1 -1.0179 7.7568 8.4163 38 1 -0.7753 3.1951 4.0158 39 1 -1.5689 2.7256 5.5792 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118914339.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:46 Heat of formation + Delta-G solvation = -69.756301 kcal Electronic energy + Delta-G solvation = -27821.702554 eV Core-core repulsion = 23633.250361 eV Total energy + Delta-G solvation = -4188.452194 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.55984 -41.55646 -39.57029 -38.31210 -37.18884 -36.40208 -35.18918 -34.56570 -34.07037 -31.39016 -30.48986 -29.79674 -27.65665 -26.96028 -25.01689 -23.02795 -22.65032 -21.42069 -20.35196 -19.97279 -19.45460 -19.00078 -18.39050 -18.20452 -17.67617 -17.13212 -16.89783 -16.77017 -16.48081 -15.76471 -15.50807 -15.21152 -15.01977 -14.84538 -14.79562 -14.35543 -14.11871 -14.08470 -14.06341 -13.91790 -13.73971 -13.45024 -13.32529 -13.22357 -12.92649 -12.66149 -12.61085 -12.41637 -12.07390 -11.93250 -11.53252 -11.27463 -11.11545 -11.04154 -10.88467 -10.50709 -9.70032 -9.34989 -8.44458 -6.56382 -1.11663 -0.63956 0.57128 1.25285 1.26738 1.39326 1.45691 1.55522 1.92592 2.15694 2.18035 2.35104 2.74701 2.78252 3.19851 3.24373 3.55259 3.69874 3.82479 3.87896 3.99825 4.11952 4.30769 4.33506 4.43695 4.48068 4.49364 4.62584 4.66928 4.69358 4.73958 4.85801 4.86876 4.90984 5.11961 5.27114 5.42089 5.88952 6.01050 6.51572 6.64686 6.76861 7.05962 7.12285 8.70847 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.017757 B = 0.003221 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.479784 B = 8689.849913 C = 9411.002124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.619 4.619 2 S 2.538 3.462 3 O -0.977 6.977 4 O -0.943 6.943 5 C -0.582 4.582 6 C -0.100 4.100 7 C -0.200 4.200 8 C 0.040 3.960 9 C -0.005 4.005 10 C -0.188 4.188 11 C 0.547 3.453 12 O -0.574 6.574 13 N -0.632 5.632 14 C 0.075 3.925 15 C 0.180 3.820 16 O -0.560 6.560 17 C -0.540 4.540 18 H 0.060 0.940 19 C 0.030 3.970 20 N -0.922 5.922 21 Si 0.916 3.084 22 H -0.261 1.261 23 H -0.279 1.279 24 H -0.232 1.232 25 C 0.119 3.881 26 O -0.112 6.112 27 H 0.131 0.869 28 H 0.166 0.834 29 H 0.161 0.839 30 H 0.193 0.807 31 H 0.196 0.804 32 H 0.215 0.785 33 H 0.169 0.831 34 H 0.110 0.890 35 H 0.083 0.917 36 H 0.355 0.645 37 H 0.274 0.726 38 H 0.062 0.938 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.396 -18.811 -6.645 21.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.773 4.773 2 S 2.716 3.284 3 O -0.974 6.974 4 O -0.941 6.941 5 C -0.713 4.713 6 C -0.120 4.120 7 C -0.219 4.219 8 C -0.014 4.014 9 C -0.025 4.025 10 C -0.208 4.208 11 C 0.342 3.658 12 O -0.457 6.457 13 N -0.365 5.365 14 C -0.048 4.048 15 C 0.139 3.861 16 O -0.372 6.372 17 C -0.578 4.578 18 H 0.079 0.921 19 C -0.171 4.171 20 N -0.559 5.559 21 Si 0.742 3.258 22 H -0.187 1.187 23 H -0.206 1.206 24 H -0.156 1.156 25 C -0.004 4.004 26 O -0.005 6.005 27 H 0.150 0.850 28 H 0.184 0.816 29 H 0.179 0.821 30 H 0.210 0.790 31 H 0.213 0.787 32 H 0.232 0.768 33 H 0.187 0.813 34 H 0.128 0.872 35 H 0.101 0.899 36 H 0.208 0.792 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 8.659 -18.981 -8.127 22.390 hybrid contribution -0.082 0.867 1.308 1.571 sum 8.577 -18.114 -6.819 21.170 Atomic orbital electron populations 1.29993 1.19210 1.14383 1.13754 1.04451 0.79952 0.72839 0.71185 1.93546 1.79811 1.38380 1.85694 1.93577 1.79861 1.62380 1.58259 1.35522 1.23748 1.01573 1.10503 1.22153 0.97096 0.95453 0.97340 1.22774 1.07187 0.96997 0.94959 1.21001 0.99672 0.90548 0.90218 1.21358 0.98318 0.94195 0.88587 1.22510 0.95395 0.98937 1.03998 1.17374 0.85782 0.78336 0.84320 1.90764 1.69640 1.58409 1.26922 1.49655 1.29103 1.27821 1.29885 1.24336 1.02262 0.87374 0.90836 1.20350 0.88427 0.88609 0.88678 1.86496 1.64878 1.43626 1.42213 1.21242 0.95838 1.10685 1.29986 0.92141 1.25777 1.02218 0.95417 0.93693 1.69978 1.37156 1.16876 1.31868 0.86359 0.80460 0.80580 0.78447 1.18720 1.20557 1.15566 1.23102 0.89684 0.87054 1.00560 1.84416 1.64302 1.36105 1.15700 0.85041 0.81627 0.82051 0.78986 0.78666 0.76826 0.81346 0.87188 0.89881 0.79190 0.91612 0.91990 0.87698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -9.38 10.80 113.37 1.22 -8.15 16 2 S 2.54 60.99 5.94 -56.49 -0.34 60.66 16 3 O -0.98 -33.54 17.95 -126.72 -2.27 -35.81 16 4 O -0.94 -24.07 17.70 -127.65 -2.26 -26.33 16 5 C -0.58 -16.28 6.96 67.11 0.47 -15.81 16 6 C -0.10 -2.22 10.50 22.06 0.23 -1.98 16 7 C -0.20 -4.17 10.90 22.71 0.25 -3.92 16 8 C 0.04 1.07 5.34 23.03 0.12 1.20 16 9 C -0.01 -0.11 9.95 22.50 0.22 0.12 16 10 C -0.19 -4.78 9.70 22.48 0.22 -4.56 16 11 C 0.55 19.57 7.59 85.06 0.65 20.22 16 12 O -0.57 -23.00 13.22 19.11 0.25 -22.74 16 13 N -0.63 -23.72 3.69 -869.07 -3.20 -26.92 16 14 C 0.07 2.71 7.11 83.27 0.59 3.30 16 15 C 0.18 7.95 1.10 -11.12 -0.01 7.93 16 16 O -0.56 -25.96 13.33 -148.98 -1.99 -27.95 16 17 C -0.54 -27.58 9.28 25.60 0.24 -27.34 16 18 H 0.06 3.38 8.06 -2.91 -0.02 3.36 16 19 C 0.03 1.57 5.47 84.66 0.46 2.03 16 20 N -0.92 -51.60 13.96 21.45 0.30 -51.30 16 21 Si 0.92 37.57 24.42 68.60 1.68 39.24 16 22 H -0.26 -10.50 7.06 99.48 0.70 -9.80 16 23 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 24 H -0.23 -8.45 5.50 99.48 0.55 -7.90 16 25 C 0.12 4.84 8.02 83.17 0.67 5.50 16 26 O -0.11 -3.85 7.80 18.30 0.14 -3.71 16 27 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.17 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.16 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.19 2.86 8.06 -2.91 -0.02 2.83 16 31 H 0.20 2.38 8.06 -2.91 -0.02 2.35 16 32 H 0.22 1.89 8.06 -2.91 -0.02 1.86 16 33 H 0.17 3.19 7.89 -2.91 -0.02 3.17 16 34 H 0.11 3.67 8.10 -2.39 -0.02 3.65 16 35 H 0.08 2.72 7.15 -2.39 -0.02 2.70 16 36 H 0.35 15.38 3.16 -74.06 -0.23 15.15 16 37 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 38 H 0.06 2.61 8.14 -2.38 -0.02 2.59 16 39 H 0.11 3.96 8.10 -2.39 -0.02 3.94 16 Total: -1.00 -82.33 347.89 -1.66 -83.99 By element: Atomic # 1 Polarization: 31.66 SS G_CDS: 0.70 Total: 32.36 kcal Atomic # 6 Polarization: -26.81 SS G_CDS: 5.33 Total: -21.48 kcal Atomic # 7 Polarization: -75.32 SS G_CDS: -2.90 Total: -78.22 kcal Atomic # 8 Polarization: -110.42 SS G_CDS: -6.12 Total: -116.54 kcal Atomic # 14 Polarization: 37.57 SS G_CDS: 1.68 Total: 39.24 kcal Atomic # 16 Polarization: 60.99 SS G_CDS: -0.34 Total: 60.66 kcal Total: -82.33 -1.66 -83.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118914339.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.235 kcal (2) G-P(sol) polarization free energy of solvation -82.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds