Wall clock time and date at job start Sat Apr 11 2020 06:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34232 * 117.00028 * 2 1 4 4 O 1.20823 * 119.99883 * 359.97438 * 3 2 1 5 5 C 1.50692 * 119.99933 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.47171 * 180.02562 * 5 3 2 7 7 N 1.46495 * 109.47342 * 179.97438 * 6 5 3 8 8 C 1.36740 * 120.00016 * 274.07589 * 7 6 5 9 9 H 1.07997 * 120.00151 * 134.24229 * 8 7 6 10 10 C 1.39130 * 120.00138 * 314.24752 * 8 7 6 11 11 N 1.31313 * 119.99702 * 1.69024 * 10 8 7 12 12 Si 1.86794 * 120.00342 * 181.68910 * 10 8 7 13 13 H 1.48501 * 109.47127 * 60.00080 * 12 10 8 14 14 H 1.48508 * 109.47381 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47312 * 299.99715 * 12 10 8 16 16 C 1.34776 * 120.00281 * 94.07566 * 7 6 5 17 17 O 1.21634 * 119.99990 * 5.75538 * 16 7 6 18 18 C 1.47441 * 120.00238 * 185.76047 * 16 7 6 19 19 C 1.38823 * 123.65467 * 310.84977 * 18 16 7 20 20 C 1.33321 * 115.06428 * 180.31767 * 19 18 16 21 21 S 1.70518 * 111.44518 * 359.72128 * 20 19 18 22 22 C 1.38269 * 123.65538 * 130.65309 * 18 16 7 23 23 C 1.46685 * 125.50405 * 359.97438 * 22 18 16 24 24 O 1.21594 * 119.99795 * 354.90302 * 23 22 18 25 25 O 1.34886 * 120.00163 * 174.62117 * 23 22 18 26 26 C 1.45200 * 116.99910 * 180.02562 * 25 23 22 27 27 H 1.09000 * 109.47239 * 59.99941 * 1 2 3 28 28 H 1.08997 * 109.47005 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47197 * 299.99748 * 1 2 3 30 30 H 1.08998 * 109.47615 * 59.99614 * 5 3 2 31 31 H 1.09004 * 109.47442 * 299.99935 * 5 3 2 32 32 H 1.08998 * 109.47301 * 59.99256 * 6 5 3 33 33 H 1.09003 * 109.46712 * 299.99406 * 6 5 3 34 34 H 0.97006 * 119.99944 * 180.02562 * 11 10 8 35 35 H 1.07999 * 122.46702 * 0.02562 * 19 18 16 36 36 H 1.08001 * 124.27692 * 179.74299 * 20 19 18 37 37 H 1.09005 * 109.46727 * 60.00501 * 26 25 23 38 38 H 1.08999 * 109.46888 * 180.02562 * 26 25 23 39 39 H 1.08989 * 109.47277 * 300.00471 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4631 2.8188 0.0002 8 6 6.1502 2.7699 1.1814 9 1 7.0197 2.1361 1.2745 10 6 5.7293 3.5366 2.2634 11 7 4.6529 4.2816 2.1608 12 14 6.6951 3.5060 3.8620 13 1 8.0828 3.9714 3.6109 14 1 6.0442 4.4025 4.8509 15 1 6.7266 2.1203 4.3949 16 6 6.1318 2.9375 -1.1639 17 8 5.5197 3.0863 -2.2044 18 6 7.6053 2.8870 -1.1762 19 6 8.4079 3.6359 -0.3264 20 6 9.7196 3.4620 -0.4895 21 16 10.0502 2.3331 -1.7239 22 6 8.3374 2.0856 -2.0328 23 6 7.7757 1.1799 -3.0407 24 8 6.5724 1.0202 -3.1113 25 8 8.5937 0.5287 -3.8929 26 6 7.9683 -0.3509 -4.8643 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.9557 0.7809 -0.8907 31 1 3.9564 0.7806 0.8892 32 1 3.6107 3.2357 0.8906 33 1 3.6101 3.2367 -0.8894 34 1 4.3595 4.8165 2.9151 35 1 7.9998 4.3131 0.4092 36 1 10.4771 3.9716 0.0876 37 1 7.2898 0.2259 -5.4928 38 1 8.7368 -0.8110 -5.4854 39 1 7.4090 -1.1280 -4.3436 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347386115.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:10 Heat of formation + Delta-G solvation = -155.647999 kcal Electronic energy + Delta-G solvation = -27998.069217 eV Core-core repulsion = 23805.892480 eV Total energy + Delta-G solvation = -4192.176737 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.07200 -39.92088 -38.90600 -36.70594 -36.02323 -35.86563 -34.90007 -31.98281 -30.68851 -29.99229 -27.75518 -27.37715 -25.36451 -25.13894 -23.05806 -21.60225 -20.68092 -19.81833 -18.73322 -18.48965 -17.34050 -16.88063 -16.23535 -16.14427 -16.07141 -15.98158 -15.56432 -15.26410 -14.55872 -14.47497 -13.83106 -13.73401 -13.49475 -13.17082 -13.13065 -12.82857 -12.47479 -12.32038 -12.20523 -12.06041 -11.90901 -11.77003 -11.62576 -11.19431 -11.00162 -10.83943 -10.74603 -10.55722 -10.47277 -10.46494 -10.13196 -9.97214 -9.93538 -9.19629 -8.68139 -8.54509 -8.11132 -7.55964 -6.37382 -4.27916 0.66573 1.75519 2.19011 2.62072 2.75947 2.90272 3.05400 3.11311 3.14452 3.14844 3.23595 3.98074 4.10358 4.71472 4.88263 5.16373 5.23852 5.28992 5.30339 5.34218 5.36125 5.42475 5.63383 5.69396 5.71230 5.90776 5.98140 6.07511 6.40341 6.42910 6.48176 6.62568 6.78841 6.81512 6.99406 7.24413 7.61481 7.89662 8.11150 8.26734 8.31472 8.95576 9.36639 9.82492 10.55976 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.008748 B = 0.005238 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3199.830628 B = 5344.735053 C = 7934.730343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.468 3.532 4 O -0.505 6.505 5 C -0.122 4.122 6 C 0.115 3.885 7 N -0.430 5.430 8 C -0.339 4.339 9 H 0.089 0.911 10 C 0.048 3.952 11 N -0.857 5.857 12 Si 0.917 3.083 13 H -0.269 1.269 14 H -0.282 1.282 15 H -0.271 1.271 16 C 0.530 3.470 17 O -0.562 6.562 18 C -0.002 4.002 19 C -0.097 4.097 20 C -0.244 4.244 21 S 0.205 5.795 22 C -0.240 4.240 23 C 0.528 3.472 24 O -0.460 6.460 25 O -0.365 6.365 26 C 0.041 3.959 27 H 0.059 0.941 28 H 0.094 0.906 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.135 0.865 33 H 0.065 0.935 34 H 0.274 0.726 35 H 0.163 0.837 36 H 0.169 0.831 37 H 0.062 0.938 38 H 0.098 0.902 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.640 -7.147 -3.741 10.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.285 6.285 3 C 0.311 3.689 4 O -0.392 6.392 5 C -0.161 4.161 6 C -0.009 4.009 7 N -0.149 5.149 8 C -0.467 4.467 9 H 0.106 0.894 10 C -0.159 4.159 11 N -0.493 5.493 12 Si 0.742 3.258 13 H -0.194 1.194 14 H -0.207 1.207 15 H -0.196 1.196 16 C 0.315 3.685 17 O -0.445 6.445 18 C -0.021 4.021 19 C -0.128 4.128 20 C -0.381 4.381 21 S 0.473 5.527 22 C -0.360 4.360 23 C 0.370 3.630 24 O -0.346 6.346 25 O -0.283 6.283 26 C -0.053 4.053 27 H 0.078 0.922 28 H 0.113 0.887 29 H 0.078 0.922 30 H 0.113 0.887 31 H 0.122 0.878 32 H 0.153 0.847 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.180 0.820 36 H 0.186 0.814 37 H 0.081 0.919 38 H 0.117 0.883 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.943 -7.271 -4.782 11.133 hybrid contribution -1.158 0.510 1.580 2.024 sum 5.785 -6.761 -3.202 9.457 Atomic orbital electron populations 1.23152 0.77511 1.02931 1.02295 1.86546 1.22645 1.34548 1.84723 1.24080 0.92390 0.80821 0.71640 1.90639 1.67261 1.36198 1.45092 1.21875 0.85702 1.03499 1.05042 1.21568 0.81756 0.91124 1.06406 1.43106 1.04627 1.62677 1.04441 1.19390 1.12309 1.25792 0.89243 0.89388 1.25599 0.96128 0.94264 0.99929 1.69539 1.21716 1.25762 1.32309 0.86157 0.79908 0.78612 0.81086 1.19363 1.20711 1.19643 1.17760 0.85076 0.80767 0.84853 1.90709 1.68278 1.52899 1.32582 1.19731 0.96506 0.93657 0.92193 1.20243 0.91279 1.01495 0.99739 1.25174 1.00922 1.06407 1.05602 1.82738 1.02587 1.37397 1.29982 1.23573 0.97687 1.08695 1.06007 1.19685 0.84929 0.78688 0.79732 1.91001 1.14633 1.60067 1.68861 1.86544 1.40807 1.56393 1.44528 1.23188 0.99111 0.92644 0.90393 0.92226 0.88716 0.92186 0.88718 0.87821 0.84740 0.91630 0.91467 0.82002 0.81386 0.91880 0.88347 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.56 101.05 1.07 1.53 16 2 O -0.37 -6.40 10.57 -39.26 -0.41 -6.81 16 3 C 0.47 9.52 7.96 36.00 0.29 9.81 16 4 O -0.51 -11.46 15.73 -18.75 -0.29 -11.75 16 5 C -0.12 -2.60 6.12 -27.89 -0.17 -2.77 16 6 C 0.11 2.84 4.43 -4.04 -0.02 2.82 16 7 N -0.43 -10.70 2.51 -116.04 -0.29 -10.99 16 8 C -0.34 -8.08 6.90 -15.03 -0.10 -8.18 16 9 H 0.09 2.03 7.08 -52.49 -0.37 1.66 16 10 C 0.05 1.13 5.38 -17.44 -0.09 1.04 16 11 N -0.86 -21.73 10.79 55.51 0.60 -21.13 16 12 Si 0.92 18.26 29.55 -169.99 -5.02 13.24 16 13 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 14 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 15 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 16 C 0.53 13.32 6.54 -12.51 -0.08 13.24 16 17 O -0.56 -15.67 14.60 -16.84 -0.25 -15.92 16 18 C 0.00 -0.03 5.04 -105.92 -0.53 -0.57 16 19 C -0.10 -1.79 8.33 -41.08 -0.34 -2.13 16 20 C -0.24 -3.55 10.87 29.02 0.32 -3.24 16 21 S 0.20 2.90 22.91 -107.50 -2.46 0.43 16 22 C -0.24 -4.60 6.51 -36.16 -0.24 -4.84 16 23 C 0.53 10.38 7.90 34.14 0.27 10.65 16 24 O -0.46 -10.58 13.87 -26.73 -0.37 -10.95 16 25 O -0.36 -5.78 10.43 -41.00 -0.43 -6.20 16 26 C 0.04 0.49 10.57 101.05 1.07 1.55 16 27 H 0.06 0.78 8.13 -51.93 -0.42 0.35 16 28 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.78 8.13 -51.93 -0.42 0.35 16 30 H 0.09 2.03 8.14 -51.93 -0.42 1.61 16 31 H 0.10 2.10 8.14 -51.93 -0.42 1.67 16 32 H 0.14 3.55 5.16 -51.93 -0.27 3.28 16 33 H 0.07 1.74 7.20 -51.93 -0.37 1.37 16 34 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 35 H 0.16 3.11 7.25 -52.49 -0.38 2.73 16 36 H 0.17 1.87 8.06 -52.49 -0.42 1.45 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 357.53 15.07 5.39 5.39 Total: -1.00 -32.07 357.53 -6.45 -38.52 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -4.33 Total: 7.27 kcal Atomic # 6 Polarization: 17.48 SS G_CDS: 1.43 Total: 18.91 kcal Atomic # 7 Polarization: -32.43 SS G_CDS: 0.31 Total: -32.12 kcal Atomic # 8 Polarization: -49.88 SS G_CDS: -1.75 Total: -51.64 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.02 Total: 13.24 kcal Atomic # 16 Polarization: 2.90 SS G_CDS: -2.46 Total: 0.43 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.07 -6.45 -38.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347386115.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.131 kcal (2) G-P(sol) polarization free energy of solvation -32.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds