Wall clock time and date at job start Sat Apr 11 2020 06:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42893 * 114.00240 * 2 1 4 4 C 1.50701 * 112.49695 * 293.00874 * 3 2 1 5 5 O 1.21290 * 119.99635 * 347.25210 * 4 3 2 6 6 N 1.34771 * 120.00208 * 167.24878 * 4 3 2 7 7 C 1.39927 * 120.00013 * 172.42994 * 6 4 3 8 8 C 1.38963 * 120.03620 * 24.84170 * 7 6 4 9 9 C 1.38160 * 120.06876 * 180.02562 * 8 7 6 10 10 C 1.38168 * 120.13368 * 359.97438 * 9 8 7 11 11 C 1.38904 * 120.07852 * 359.97438 * 10 9 8 12 12 O 1.35748 * 120.03862 * 180.02562 * 11 10 9 13 13 C 1.34832 * 117.00324 * 171.40948 * 12 11 10 14 14 H 1.08004 * 119.99733 * 5.23339 * 13 12 11 15 15 C 1.38644 * 120.00162 * 185.23984 * 13 12 11 16 16 N 1.31561 * 120.00222 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00008 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47134 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47352 * 119.99649 * 17 15 13 20 20 H 1.48499 * 109.46961 * 239.99743 * 17 15 13 21 21 C 1.38712 * 120.03699 * 205.14076 * 7 6 4 22 22 C 1.53048 * 113.19264 * 62.82562 * 3 2 1 23 23 S 1.81428 * 89.88564 * 82.36677 * 22 3 2 24 24 O 1.42098 * 112.75605 * 280.47391 * 23 22 3 25 25 O 1.42111 * 112.75096 * 136.72797 * 23 22 3 26 26 C 1.53040 * 113.15446 * 163.22044 * 3 2 1 27 27 H 1.09008 * 109.47308 * 308.83435 * 1 2 3 28 28 H 1.09002 * 109.47030 * 68.83275 * 1 2 3 29 29 H 1.08998 * 109.47712 * 188.83342 * 1 2 3 30 30 H 0.97000 * 120.00398 * 352.42633 * 6 4 3 31 31 H 1.08001 * 119.96764 * 359.97438 * 8 7 6 32 32 H 1.07991 * 119.93279 * 180.02562 * 9 8 7 33 33 H 1.08004 * 119.96178 * 180.02562 * 10 9 8 34 34 H 0.97002 * 120.00262 * 180.02562 * 16 15 13 35 35 H 1.08003 * 120.07036 * 359.97438 * 21 7 6 36 36 H 1.08999 * 113.14572 * 197.62523 * 22 3 2 37 37 H 1.08996 * 113.15176 * 327.11007 * 22 3 2 38 38 H 1.09005 * 113.14475 * 32.86190 * 26 3 2 39 39 H 1.08997 * 113.14844 * 162.33744 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7476 2.0535 -1.2816 5 8 1.3119 1.4654 -2.2487 6 7 1.9970 3.3760 -1.3530 7 6 1.9053 4.0399 -2.5814 8 6 1.0973 3.5287 -3.5898 9 6 1.0068 4.1833 -4.8031 10 6 1.7185 5.3480 -5.0176 11 6 2.5271 5.8647 -4.0134 12 8 3.2256 7.0094 -4.2248 13 6 3.8475 7.5528 -3.1591 14 1 3.8475 7.0343 -2.2116 15 6 4.4870 8.7770 -3.2795 16 7 4.4873 9.4084 -4.4337 17 14 5.3481 9.5302 -1.8027 18 1 5.2028 8.6284 -0.6319 19 1 6.7892 9.7140 -2.1105 20 1 4.7365 10.8471 -1.4916 21 6 2.6258 5.2056 -2.7961 22 6 1.6685 2.1173 1.2515 23 16 3.0010 1.2800 2.1542 24 8 2.6311 -0.0169 2.6020 25 8 3.7691 2.1710 2.9515 26 6 3.4857 1.3071 0.4062 27 1 -0.3634 0.6445 0.8006 28 1 -0.3633 0.3711 -0.9583 29 1 -0.3634 -1.0154 0.1578 30 1 2.2398 3.8678 -0.5530 31 1 0.5401 2.6182 -3.4252 32 1 0.3778 3.7843 -5.5850 33 1 1.6453 5.8577 -5.9670 34 1 4.9351 10.2647 -4.5180 35 1 3.2580 5.6026 -2.0155 36 1 1.8403 3.1867 1.1286 37 1 0.6776 1.8965 1.6482 38 1 4.0169 0.4076 0.0948 39 1 4.0078 2.2202 0.1204 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361631881.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:18 Heat of formation + Delta-G solvation = -92.551048 kcal Electronic energy + Delta-G solvation = -27573.921508 eV Core-core repulsion = 23384.480860 eV Total energy + Delta-G solvation = -4189.440648 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.18832 -39.28444 -38.26916 -37.63398 -36.53743 -36.41686 -35.36762 -33.94499 -32.29661 -29.50744 -28.70485 -28.00548 -26.62474 -25.50117 -24.71871 -22.00691 -21.83918 -20.10036 -19.34649 -18.77222 -18.05230 -17.30234 -17.21950 -17.05370 -16.47357 -16.15638 -15.67882 -15.58457 -15.21426 -14.98967 -14.85217 -14.23397 -14.15055 -13.81329 -13.63802 -13.59177 -13.28837 -13.03652 -12.67481 -12.64874 -12.55037 -12.40536 -11.90467 -11.84820 -11.71403 -11.60853 -11.27968 -11.10237 -10.97476 -10.88354 -10.68263 -10.48745 -10.01087 -9.59390 -9.26506 -8.87886 -7.83896 -7.26128 -6.51079 -4.11634 -0.40680 1.34237 1.76883 2.26582 2.45096 2.72655 2.84791 3.07341 3.08400 3.09114 3.13871 3.57010 3.62371 3.90150 4.14777 4.28596 4.43605 4.53371 4.65043 4.76153 5.02014 5.03322 5.16421 5.20559 5.21671 5.44575 5.59594 5.89097 5.93316 6.09704 6.14248 6.36185 6.51435 6.78799 6.87284 7.04074 7.22836 7.34134 7.50852 7.70610 7.91797 7.98106 8.94055 9.63418 10.66781 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.012490 B = 0.003384 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.257200 B = 8271.230338 C =10293.299066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.330 6.330 3 C 0.121 3.879 4 C 0.517 3.483 5 O -0.494 6.494 6 N -0.656 5.656 7 C 0.174 3.826 8 C -0.221 4.221 9 C -0.063 4.063 10 C -0.199 4.199 11 C 0.170 3.830 12 O -0.176 6.176 13 C -0.394 4.394 14 H 0.091 0.909 15 C 0.040 3.960 16 N -0.861 5.861 17 Si 0.941 3.059 18 H -0.267 1.267 19 H -0.275 1.275 20 H -0.276 1.276 21 C -0.260 4.260 22 C -0.645 4.645 23 S 2.433 3.567 24 O -0.890 6.890 25 O -0.913 6.913 26 C -0.589 4.589 27 H 0.048 0.952 28 H 0.062 0.938 29 H 0.100 0.900 30 H 0.406 0.594 31 H 0.142 0.858 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.270 0.730 35 H 0.131 0.869 36 H 0.157 0.843 37 H 0.143 0.857 38 H 0.148 0.852 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.733 -14.942 13.059 20.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.247 6.247 3 C 0.074 3.926 4 C 0.301 3.699 5 O -0.368 6.368 6 N -0.302 5.302 7 C 0.081 3.919 8 C -0.242 4.242 9 C -0.082 4.082 10 C -0.218 4.218 11 C 0.116 3.884 12 O -0.079 6.079 13 C -0.470 4.470 14 H 0.108 0.892 15 C -0.164 4.164 16 N -0.495 5.495 17 Si 0.765 3.235 18 H -0.191 1.191 19 H -0.201 1.201 20 H -0.201 1.201 21 C -0.282 4.282 22 C -0.772 4.772 23 S 2.610 3.390 24 O -0.887 6.887 25 O -0.910 6.910 26 C -0.715 4.715 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.242 0.758 31 H 0.159 0.841 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.080 0.920 35 H 0.148 0.852 36 H 0.175 0.825 37 H 0.161 0.839 38 H 0.166 0.834 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -5.435 -15.587 13.198 21.135 hybrid contribution 0.042 1.252 -0.013 1.252 sum -5.394 -14.336 13.185 20.210 Atomic orbital electron populations 1.23065 0.79089 1.03854 1.01726 1.88074 1.21612 1.20764 1.94214 1.20861 0.93430 0.85881 0.92430 1.20205 0.78564 0.82051 0.89069 1.90650 1.41848 1.67661 1.36643 1.43402 1.67987 1.08215 1.10556 1.17496 0.96691 0.92843 0.84873 1.21175 1.04866 1.04035 0.94107 1.20618 0.97553 0.93765 0.96300 1.20326 1.02359 0.99370 0.99791 1.19031 0.89929 0.87448 0.92029 1.84006 1.56255 1.31929 1.35716 1.21314 1.32812 1.03335 0.89544 0.89185 1.25286 0.97354 0.95413 0.98390 1.70044 1.40709 1.15194 1.23596 0.85660 0.78920 0.79184 0.79709 1.19127 1.20099 1.20108 1.20748 1.07672 0.99153 1.00579 1.31830 1.22179 1.13072 1.10101 1.08050 0.78503 0.75974 0.76500 1.93747 1.80689 1.35363 1.78931 1.93692 1.66007 1.64891 1.66429 1.31146 1.00204 1.13457 1.26737 0.93336 0.91910 0.88128 0.75790 0.84084 0.86549 0.86347 0.91995 0.85175 0.82480 0.83863 0.83364 0.81980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 10.52 101.05 1.06 1.22 16 2 O -0.33 -3.56 9.64 -58.49 -0.56 -4.12 16 3 C 0.12 1.16 1.06 -91.73 -0.10 1.07 16 4 C 0.52 6.89 6.55 -10.99 -0.07 6.82 16 5 O -0.49 -8.24 12.32 -12.00 -0.15 -8.39 16 6 N -0.66 -8.81 5.28 -9.88 -0.05 -8.86 16 7 C 0.17 3.11 6.47 -83.72 -0.54 2.57 16 8 C -0.22 -4.06 8.85 -39.34 -0.35 -4.41 16 9 C -0.06 -1.16 10.03 -39.64 -0.40 -1.55 16 10 C -0.20 -4.13 9.99 -39.36 -0.39 -4.52 16 11 C 0.17 3.97 6.63 -39.13 -0.26 3.71 16 12 O -0.18 -4.85 9.76 0.05 0.00 -4.85 16 13 C -0.39 -10.56 9.48 30.88 0.29 -10.26 16 14 H 0.09 2.19 5.24 -52.48 -0.27 1.92 16 15 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 16 N -0.86 -24.62 13.67 55.48 0.76 -23.86 16 17 Si 0.94 19.73 29.55 -169.99 -5.02 14.71 16 18 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 19 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 20 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 21 C -0.26 -5.30 9.05 -39.21 -0.35 -5.65 16 22 C -0.65 -3.91 6.92 37.18 0.26 -3.65 16 23 S 2.43 16.34 7.48 -107.50 -0.80 15.54 16 24 O -0.89 -8.63 17.65 -61.43 -1.08 -9.71 16 25 O -0.91 -8.70 18.18 -57.30 -1.04 -9.74 16 26 C -0.59 -4.21 7.29 37.18 0.27 -3.94 16 27 H 0.05 0.31 6.23 -51.92 -0.32 -0.02 16 28 H 0.06 0.64 6.91 -51.93 -0.36 0.28 16 29 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.41 4.02 6.97 -40.82 -0.28 3.74 16 31 H 0.14 2.55 5.35 -52.49 -0.28 2.27 16 32 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 33 H 0.12 2.36 8.06 -52.48 -0.42 1.94 16 34 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.13 2.55 5.69 -52.48 -0.30 2.25 16 36 H 0.16 0.66 6.40 -51.93 -0.33 0.33 16 37 H 0.14 0.60 6.37 -51.93 -0.33 0.27 16 38 H 0.15 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.16 0.94 8.11 -51.93 -0.42 0.52 16 LS Contribution 341.16 15.07 5.14 5.14 Total: -1.00 -37.70 341.16 -7.22 -44.92 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -3.73 Total: 6.86 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: -0.68 Total: -17.64 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: 0.71 Total: -32.72 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -2.84 Total: -36.81 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Atomic # 16 Polarization: 16.34 SS G_CDS: -0.80 Total: 15.54 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -37.70 -7.22 -44.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361631881.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.630 kcal (2) G-P(sol) polarization free energy of solvation -37.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds