Wall clock time and date at job start Sat Apr 11 2020 06:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00115 * 2 1 4 4 C 1.50704 * 112.49501 * 292.52868 * 3 2 1 5 5 O 1.21291 * 120.00716 * 122.31823 * 4 3 2 6 6 N 1.34781 * 119.99678 * 302.32095 * 4 3 2 7 7 C 1.39998 * 120.00060 * 177.43725 * 6 4 3 8 8 C 1.38923 * 119.99744 * 28.27014 * 7 6 4 9 9 C 1.38000 * 119.99578 * 180.25411 * 8 7 6 10 10 C 1.38913 * 120.00273 * 359.51573 * 9 8 7 11 11 O 1.35770 * 120.00180 * 180.25671 * 10 9 8 12 12 C 1.34810 * 116.99977 * 5.81250 * 11 10 9 13 13 H 1.07997 * 120.00063 * 5.02992 * 12 11 10 14 14 C 1.38634 * 120.00268 * 185.03262 * 12 11 10 15 15 N 1.31578 * 119.99751 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00228 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.46994 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46882 * 119.99998 * 16 14 12 19 19 H 1.48503 * 109.47240 * 239.99909 * 16 14 12 20 20 C 1.38908 * 119.99947 * 0.23297 * 10 9 8 21 21 C 1.38010 * 120.00368 * 359.97438 * 20 10 9 22 22 C 1.53044 * 113.19830 * 62.34392 * 3 2 1 23 23 S 1.81434 * 89.88734 * 82.36724 * 22 3 2 24 24 O 1.42100 * 112.75483 * 280.48213 * 23 22 3 25 25 O 1.42099 * 112.75365 * 136.72847 * 23 22 3 26 26 C 1.53042 * 113.15486 * 162.74235 * 3 2 1 27 27 H 1.08995 * 109.47090 * 65.27707 * 1 2 3 28 28 H 1.08994 * 109.47428 * 185.28156 * 1 2 3 29 29 H 1.09008 * 109.47169 * 305.27992 * 1 2 3 30 30 H 0.96997 * 119.99916 * 357.43309 * 6 4 3 31 31 H 1.07994 * 120.00556 * 0.02976 * 8 7 6 32 32 H 1.08001 * 120.00115 * 179.79256 * 9 8 7 33 33 H 0.97001 * 120.00139 * 179.97438 * 15 14 12 34 34 H 1.08000 * 120.00192 * 180.02562 * 20 10 9 35 35 H 1.07998 * 120.00043 * 180.02562 * 21 20 10 36 36 H 1.08992 * 113.15171 * 197.62533 * 22 3 2 37 37 H 1.08999 * 113.14396 * 327.11678 * 22 3 2 38 38 H 1.09000 * 113.14460 * 32.85958 * 26 3 2 39 39 H 1.09001 * 113.14675 * 162.29507 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7574 2.0492 -1.2861 5 8 1.1929 3.1225 -1.2652 6 7 2.1586 1.5215 -2.4597 7 6 1.8764 2.1864 -3.6590 8 6 1.7416 3.5690 -3.6716 9 6 1.4583 4.2238 -4.8528 10 6 1.3178 3.5015 -6.0311 11 8 1.0442 4.1462 -7.1941 12 6 1.0405 5.4939 -7.1606 13 1 1.3283 6.0124 -6.2580 14 6 0.6671 6.2143 -8.2847 15 7 0.3159 5.5826 -9.3842 16 14 0.6613 8.0817 -8.2380 17 1 1.0932 8.5446 -6.8947 18 1 1.5964 8.6054 -9.2658 19 1 -0.7097 8.5796 -8.5165 20 6 1.4578 2.1195 -6.0194 21 6 1.7369 1.4641 -4.8373 22 6 1.6590 2.1217 1.2460 23 16 2.9845 1.2875 2.1618 24 8 2.6112 -0.0078 2.6111 25 8 3.7465 2.1812 2.9618 26 6 3.4826 1.3086 0.4175 27 1 -0.3633 0.4298 -0.9334 28 1 -0.3634 -1.0232 0.0946 29 1 -0.3634 0.5936 0.8390 30 1 2.6429 0.6812 -2.4733 31 1 1.8550 4.1310 -2.7564 32 1 1.3501 5.2983 -4.8621 33 1 0.0543 6.0866 -10.1706 34 1 1.3490 1.5579 -6.9354 35 1 1.8461 0.3897 -4.8284 36 1 1.8317 3.1906 1.1208 37 1 0.6650 1.9022 1.6359 38 1 4.0161 0.4081 0.1132 39 1 4.0070 2.2205 0.1319 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411248218.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:21 Heat of formation + Delta-G solvation = -97.858294 kcal Electronic energy + Delta-G solvation = -27169.953877 eV Core-core repulsion = 22980.283090 eV Total energy + Delta-G solvation = -4189.670787 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.05774 -39.26746 -38.31614 -37.62733 -36.58090 -36.50799 -34.63949 -34.12726 -32.24038 -30.28597 -28.44725 -27.81344 -26.64392 -25.52126 -24.37086 -22.42386 -21.32485 -20.15240 -19.35326 -18.68677 -17.98588 -17.45371 -17.15587 -17.03253 -16.47279 -16.36029 -15.83533 -15.63572 -15.36968 -14.71110 -14.52267 -14.08103 -14.06418 -13.66167 -13.62250 -13.60921 -13.18642 -12.98729 -12.67613 -12.65804 -12.63643 -12.36353 -11.92475 -11.84674 -11.66311 -11.62440 -11.51256 -11.08519 -10.90309 -10.88250 -10.73615 -10.46012 -9.79427 -9.68123 -9.25478 -8.76342 -8.29148 -7.00820 -6.50086 -4.07460 -0.37047 1.42846 1.84010 2.11949 2.52293 2.67999 2.92672 3.10389 3.12059 3.17591 3.20127 3.55491 3.70150 3.93316 4.18537 4.42136 4.52542 4.57438 4.64678 4.85965 5.02798 5.05728 5.13276 5.17485 5.23778 5.39070 5.58771 5.67096 6.00903 6.06560 6.20647 6.30657 6.62785 6.76118 6.90402 6.99401 7.22237 7.36776 7.53142 7.67969 7.94840 8.09425 8.95735 9.64339 10.67763 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.024063 B = 0.002362 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.355034 B =11852.851526 C =12499.614649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.344 6.344 3 C 0.115 3.885 4 C 0.511 3.489 5 O -0.510 6.510 6 N -0.639 5.639 7 C 0.027 3.973 8 C -0.072 4.072 9 C -0.220 4.220 10 C 0.146 3.854 11 O -0.175 6.175 12 C -0.390 4.390 13 H 0.093 0.907 14 C 0.039 3.961 15 N -0.861 5.861 16 Si 0.941 3.059 17 H -0.266 1.266 18 H -0.275 1.275 19 H -0.275 1.275 20 C -0.177 4.177 21 C -0.092 4.092 22 C -0.616 4.616 23 S 2.426 3.574 24 O -0.894 6.894 25 O -0.918 6.918 26 C -0.592 4.592 27 H 0.053 0.947 28 H 0.103 0.897 29 H 0.054 0.946 30 H 0.407 0.593 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.270 0.730 34 H 0.122 0.878 35 H 0.116 0.884 36 H 0.166 0.834 37 H 0.136 0.864 38 H 0.145 0.855 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.370 -10.673 20.468 23.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.263 6.263 3 C 0.069 3.931 4 C 0.294 3.706 5 O -0.385 6.385 6 N -0.283 5.283 7 C -0.066 4.066 8 C -0.092 4.092 9 C -0.240 4.240 10 C 0.092 3.908 11 O -0.078 6.078 12 C -0.467 4.467 13 H 0.110 0.890 14 C -0.165 4.165 15 N -0.496 5.496 16 Si 0.766 3.234 17 H -0.190 1.190 18 H -0.201 1.201 19 H -0.201 1.201 20 C -0.196 4.196 21 C -0.112 4.112 22 C -0.743 4.743 23 S 2.604 3.396 24 O -0.891 6.891 25 O -0.915 6.915 26 C -0.719 4.719 27 H 0.072 0.928 28 H 0.121 0.879 29 H 0.072 0.928 30 H 0.242 0.758 31 H 0.151 0.849 32 H 0.149 0.851 33 H 0.080 0.920 34 H 0.140 0.860 35 H 0.134 0.866 36 H 0.183 0.817 37 H 0.154 0.846 38 H 0.163 0.837 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 4.280 -10.451 21.137 23.965 hybrid contribution -0.445 0.988 -1.208 1.622 sum 3.835 -9.463 19.929 22.393 Atomic orbital electron populations 1.23028 0.78821 1.04083 1.01552 1.88039 1.21719 1.21849 1.94665 1.21194 0.93136 0.85105 0.93666 1.20103 0.79569 0.86466 0.84488 1.90713 1.40829 1.20931 1.86076 1.43111 1.55302 1.25349 1.04508 1.17322 1.13010 0.91662 0.84556 1.21038 0.97664 0.92183 0.98282 1.21135 1.09960 1.00942 0.91933 1.19438 0.92901 0.91865 0.86599 1.83983 1.75933 1.21349 1.26546 1.21386 1.46808 0.78024 1.00439 0.88954 1.25304 0.96122 1.00628 0.94479 1.70054 1.41287 1.36234 1.02006 0.85638 0.78354 0.80554 0.78860 1.19018 1.20094 1.20098 1.19992 1.09768 0.91958 0.97928 1.20319 1.01562 0.98172 0.91167 1.31531 1.20624 1.13949 1.08229 1.08064 0.78970 0.76016 0.76501 1.93743 1.80716 1.35693 1.78951 1.93673 1.66664 1.64762 1.66410 1.31124 1.00560 1.12963 1.27278 0.92784 0.87869 0.92786 0.75798 0.84903 0.85132 0.92000 0.85956 0.86628 0.81651 0.84568 0.83678 0.82019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.62 101.05 1.07 1.24 16 2 O -0.34 -3.11 9.88 -40.88 -0.40 -3.52 16 3 C 0.11 1.04 0.94 -91.73 -0.09 0.95 16 4 C 0.51 6.55 6.14 -10.98 -0.07 6.48 16 5 O -0.51 -8.28 13.12 5.55 0.07 -8.21 16 6 N -0.64 -8.22 5.36 -9.82 -0.05 -8.27 16 7 C 0.03 0.45 6.41 -83.62 -0.54 -0.08 16 8 C -0.07 -1.39 8.74 -39.42 -0.34 -1.74 16 9 C -0.22 -4.83 9.13 -39.42 -0.36 -5.19 16 10 C 0.15 3.46 6.65 -39.08 -0.26 3.20 16 11 O -0.18 -4.91 9.75 0.04 0.00 -4.91 16 12 C -0.39 -10.79 9.44 30.88 0.29 -10.50 16 13 H 0.09 2.38 5.28 -52.49 -0.28 2.10 16 14 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 15 N -0.86 -24.95 13.67 55.48 0.76 -24.19 16 16 Si 0.94 20.38 29.55 -169.99 -5.02 15.36 16 17 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 18 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 19 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 20 C -0.18 -3.56 9.98 -39.42 -0.39 -3.95 16 21 C -0.09 -1.54 9.94 -39.42 -0.39 -1.93 16 22 C -0.62 -4.44 6.67 37.18 0.25 -4.19 16 23 S 2.43 16.01 7.48 -107.50 -0.80 15.21 16 24 O -0.89 -8.36 17.65 -61.42 -1.08 -9.44 16 25 O -0.92 -8.73 18.18 -57.30 -1.04 -9.77 16 26 C -0.59 -3.57 7.29 37.18 0.27 -3.30 16 27 H 0.05 0.51 7.70 -51.93 -0.40 0.11 16 28 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.36 6.30 -51.92 -0.33 0.03 16 30 H 0.41 3.94 8.79 -40.82 -0.36 3.58 16 31 H 0.13 2.51 5.76 -52.49 -0.30 2.21 16 32 H 0.13 2.90 5.70 -52.49 -0.30 2.60 16 33 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 35 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 36 H 0.17 1.17 7.69 -51.93 -0.40 0.77 16 37 H 0.14 0.78 6.37 -51.93 -0.33 0.45 16 38 H 0.14 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.16 0.80 8.11 -51.93 -0.42 0.38 16 LS Contribution 345.84 15.07 5.21 5.21 Total: -1.00 -37.20 345.84 -6.96 -44.16 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -3.94 Total: 6.41 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: -0.65 Total: -18.03 kcal Atomic # 7 Polarization: -33.17 SS G_CDS: 0.71 Total: -32.47 kcal Atomic # 8 Polarization: -33.39 SS G_CDS: -2.46 Total: -35.85 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 16 Polarization: 16.01 SS G_CDS: -0.80 Total: 15.21 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -37.20 -6.96 -44.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411248218.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.696 kcal (2) G-P(sol) polarization free energy of solvation -37.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds