Wall clock time and date at job start Sat Apr 11 2020 06:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34778 * 119.99642 * 2 1 4 4 O 1.21685 * 120.00101 * 178.74961 * 3 2 1 5 5 C 1.46689 * 119.99967 * 358.74423 * 3 2 1 6 6 C 1.35660 * 126.12781 * 187.90354 * 5 3 2 7 7 N 1.30944 * 114.19006 * 180.02562 * 6 5 3 8 8 C 1.29428 * 117.36450 * 359.97438 * 7 6 5 9 9 S 1.70956 * 110.38980 * 359.73310 * 8 7 6 10 10 C 1.46494 * 120.00512 * 179.97438 * 2 1 3 11 11 C 1.53500 * 114.20863 * 300.00259 * 10 2 1 12 12 N 1.47074 * 87.98361 * 87.71575 * 11 10 2 13 13 C 1.34783 * 136.05314 * 207.08795 * 12 11 10 14 14 O 1.21271 * 120.00220 * 0.02562 * 13 12 11 15 15 C 1.50695 * 119.99419 * 180.02562 * 13 12 11 16 16 S 1.81005 * 109.46912 * 180.02562 * 15 13 12 17 17 C 1.76203 * 99.99951 * 180.02562 * 16 15 13 18 18 H 1.07999 * 120.00153 * 359.97438 * 17 16 15 19 19 C 1.38795 * 119.99708 * 179.72516 * 17 16 15 20 20 N 1.31635 * 120.00475 * 0.02562 * 19 17 16 21 21 Si 1.86809 * 119.99868 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46914 * 90.00102 * 21 19 17 23 23 H 1.48502 * 109.46795 * 209.99703 * 21 19 17 24 24 H 1.48493 * 109.46972 * 329.99752 * 21 19 17 25 25 C 1.47065 * 87.88488 * 27.34397 * 12 11 10 26 26 H 1.08997 * 109.47403 * 276.31338 * 1 2 3 27 27 H 1.08995 * 109.47404 * 36.31797 * 1 2 3 28 28 H 1.09001 * 109.46515 * 156.31540 * 1 2 3 29 29 H 1.07998 * 122.91018 * 359.97438 * 6 5 3 30 30 H 1.07998 * 124.80969 * 179.97438 * 8 7 6 31 31 H 1.09000 * 113.28627 * 166.93225 * 10 2 1 32 32 H 1.09007 * 113.46714 * 332.93862 * 11 10 2 33 33 H 1.08993 * 113.47049 * 202.49675 * 11 10 2 34 34 H 1.08996 * 109.47842 * 59.99951 * 15 13 12 35 35 H 1.09007 * 109.47614 * 299.99367 * 15 13 12 36 36 H 0.96998 * 120.00294 * 180.02562 * 20 19 17 37 37 H 1.08992 * 113.46535 * 87.43761 * 25 12 11 38 38 H 1.09003 * 113.46471 * 217.88072 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3555 1.1675 0.0230 5 6 1.4056 2.4374 -0.0278 6 6 1.9484 3.6711 -0.1818 7 7 1.0750 4.6467 -0.1713 8 6 -0.1704 4.3286 -0.0199 9 16 -0.3389 2.6336 0.1249 10 6 2.1976 -1.2686 0.0006 11 6 1.9061 -2.1632 1.2134 12 7 0.7774 -2.7292 0.4592 13 6 -0.4050 -3.2996 0.7644 14 8 -0.7316 -3.4346 1.9244 15 6 -1.3210 -3.7695 -0.3360 16 16 -2.8179 -4.4837 0.3889 17 6 -3.6821 -4.9371 -1.0782 18 1 -3.2426 -4.7433 -2.0455 19 6 -4.9254 -5.5478 -0.9905 20 7 -5.4591 -5.7880 0.1886 21 14 -5.8419 -6.0279 -2.5459 22 1 -5.4662 -7.4109 -2.9349 23 1 -7.3047 -5.9634 -2.2982 24 1 -5.4835 -5.0909 -3.6407 25 6 1.5096 -2.4046 -0.7743 26 1 -0.3634 0.1130 1.0214 27 1 -0.3634 0.8280 -0.6086 28 1 -0.3632 -0.9411 -0.4128 29 1 3.0092 3.8347 -0.3017 30 1 -0.9879 5.0338 0.0070 31 1 3.2577 -1.1542 -0.2259 32 1 1.6006 -1.6070 2.0997 33 1 2.6959 -2.8855 1.4198 34 1 -0.8117 -4.5240 -0.9355 35 1 -1.5920 -2.9245 -0.9691 36 1 -6.3278 -6.2152 0.2498 37 1 2.1949 -3.1905 -1.0917 38 1 0.8664 -2.0540 -1.5814 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001536291779.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:30 Heat of formation + Delta-G solvation = 43.562308 kcal Electronic energy + Delta-G solvation = -24350.317460 eV Core-core repulsion = 20641.824752 eV Total energy + Delta-G solvation = -3708.492708 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.28942 -40.16228 -39.07592 -37.62945 -35.09879 -32.50350 -31.33368 -30.47605 -28.31609 -27.43679 -26.34264 -26.04294 -25.49235 -23.35053 -21.00166 -19.98306 -19.34816 -18.57031 -17.80841 -17.20331 -16.97636 -16.50521 -16.18545 -15.78481 -15.39467 -15.18937 -14.87075 -14.55397 -14.36674 -14.04382 -13.97565 -13.69942 -13.57082 -13.18773 -13.01884 -12.66127 -12.59267 -12.10494 -12.02826 -11.83488 -11.35044 -11.12275 -11.09294 -10.82892 -10.55930 -9.97455 -9.90270 -9.82436 -9.54427 -9.52441 -9.13913 -9.04883 -8.76330 -8.33603 -6.59833 -6.29034 -4.00908 -0.13778 0.82135 1.23010 2.06869 2.34963 2.60769 2.76775 2.93046 3.17086 3.18567 3.24710 3.45444 3.83911 3.97367 4.12179 4.15287 4.37496 4.58787 4.76893 4.79168 4.89296 4.92566 5.00983 5.06446 5.16699 5.20688 5.32517 5.39642 5.44570 5.50661 5.67428 5.74981 5.84060 6.00905 6.02909 6.77693 7.22384 7.52125 7.59948 7.68854 8.27553 8.39396 9.16349 10.78279 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.014481 B = 0.002757 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.097666 B =10155.059770 C =11321.429812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.587 5.587 3 C 0.602 3.398 4 O -0.524 6.524 5 C -0.302 4.302 6 C 0.121 3.879 7 N -0.482 5.482 8 C 0.001 3.999 9 S 0.211 5.789 10 C 0.107 3.893 11 C 0.094 3.906 12 N -0.655 5.655 13 C 0.560 3.440 14 O -0.509 6.509 15 C -0.146 4.146 16 S -0.058 6.058 17 C -0.537 4.537 18 H 0.073 0.927 19 C 0.075 3.925 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.092 3.908 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.100 0.900 29 H 0.187 0.813 30 H 0.201 0.799 31 H 0.133 0.867 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.269 0.731 37 H 0.103 0.897 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.133 16.253 -3.218 21.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.318 5.318 3 C 0.390 3.610 4 O -0.402 6.402 5 C -0.426 4.426 6 C -0.038 4.038 7 N -0.195 5.195 8 C -0.292 4.292 9 S 0.467 5.533 10 C 0.002 3.998 11 C -0.031 4.031 12 N -0.395 5.395 13 C 0.350 3.650 14 O -0.382 6.382 15 C -0.297 4.297 16 S 0.169 5.831 17 C -0.685 4.685 18 H 0.091 0.909 19 C -0.135 4.135 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.033 4.033 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.118 0.882 29 H 0.204 0.796 30 H 0.218 0.782 31 H 0.151 0.849 32 H 0.099 0.901 33 H 0.115 0.885 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.079 0.921 37 H 0.121 0.879 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 13.078 15.832 -1.228 20.571 hybrid contribution 0.411 -0.049 -2.447 2.481 sum 13.489 15.783 -3.674 21.084 Atomic orbital electron populations 1.22197 0.78928 1.03779 1.03338 1.47203 1.06982 1.04789 1.72858 1.16732 0.86452 0.81629 0.76203 1.90841 1.12368 1.86666 1.50289 1.25718 0.97179 0.99272 1.20444 1.22240 1.01257 0.85194 0.95069 1.66394 1.00967 1.35743 1.16434 1.29330 0.97821 1.01742 1.00314 1.84821 1.02803 1.02123 1.63521 1.22376 0.97714 0.82179 0.97493 1.23372 0.88386 0.94420 0.96896 1.49872 1.16761 1.62969 1.09892 1.19971 0.79340 0.75362 0.90336 1.90734 1.73146 1.53407 1.20895 1.23506 1.02118 1.03985 1.00080 1.85448 1.10089 1.76293 1.11302 1.22840 1.06205 1.46467 0.92959 0.90914 1.24993 0.96412 0.94927 0.97169 1.70011 1.17388 1.39780 1.22999 0.86167 0.78648 0.78967 0.81721 1.20241 1.20702 1.19660 1.23441 0.94454 0.95269 0.90103 0.90817 0.90840 0.88171 0.79607 0.78237 0.84924 0.90069 0.88529 0.89208 0.89471 0.92099 0.87925 0.89685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.58 8.19 59.85 0.49 1.08 16 2 N -0.59 -5.72 3.12 -175.10 -0.55 -6.27 16 3 C 0.60 6.61 7.64 -12.85 -0.10 6.52 16 4 O -0.52 -6.96 16.39 5.20 0.09 -6.87 16 5 C -0.30 -2.94 6.26 -37.09 -0.23 -3.17 16 6 C 0.12 1.18 11.10 -18.85 -0.21 0.97 16 7 N -0.48 -4.72 10.51 -15.38 -0.16 -4.89 16 8 C 0.00 0.01 12.22 51.75 0.63 0.64 16 9 S 0.21 1.57 18.15 -107.50 -1.95 -0.38 16 10 C 0.11 0.93 4.67 -67.67 -0.32 0.61 16 11 C 0.09 0.94 8.24 -8.50 -0.07 0.87 16 12 N -0.66 -8.19 2.40 -185.05 -0.44 -8.64 16 13 C 0.56 9.88 7.48 -10.98 -0.08 9.80 16 14 O -0.51 -11.18 16.64 5.57 0.09 -11.09 16 15 C -0.15 -2.77 5.98 36.00 0.22 -2.56 16 16 S -0.06 -1.51 20.57 -107.50 -2.21 -3.72 16 17 C -0.54 -14.69 9.50 30.94 0.29 -14.40 16 18 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 19 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 20 N -0.87 -25.41 13.22 55.49 0.73 -24.68 16 21 Si 0.92 20.72 29.55 -169.99 -5.02 15.70 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 25 C 0.09 0.77 7.45 -8.36 -0.06 0.71 16 26 H 0.07 0.73 7.89 -51.93 -0.41 0.33 16 27 H 0.07 0.60 4.45 -22.60 -0.10 0.50 16 28 H 0.10 1.03 5.02 -51.93 -0.26 0.77 16 29 H 0.19 1.62 8.06 -52.49 -0.42 1.20 16 30 H 0.20 0.82 8.06 -52.49 -0.42 0.39 16 31 H 0.13 1.03 7.29 -51.93 -0.38 0.65 16 32 H 0.08 0.93 8.14 -51.92 -0.42 0.50 16 33 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 35 H 0.09 1.48 8.14 -51.91 -0.42 1.06 16 36 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.68 7.40 -51.93 -0.38 0.30 16 LS Contribution 351.09 15.07 5.29 5.29 Total: -1.00 -35.97 351.09 -7.71 -43.68 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -4.04 Total: -1.18 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: 0.47 Total: 3.03 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: -0.42 Total: -44.46 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: 0.18 Total: -17.96 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 0.07 SS G_CDS: -4.16 Total: -4.10 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.97 -7.71 -43.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536291779.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.242 kcal (2) G-P(sol) polarization free energy of solvation -35.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds