Wall clock time and date at job start Sat Apr 11 2020 06:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34778 * 119.99642 * 2 1 4 4 O 1.21685 * 120.00101 * 178.74961 * 3 2 1 5 5 C 1.46689 * 119.99967 * 358.74423 * 3 2 1 6 6 C 1.35660 * 126.12781 * 187.90354 * 5 3 2 7 7 N 1.30944 * 114.19006 * 180.02562 * 6 5 3 8 8 C 1.29428 * 117.36450 * 359.97438 * 7 6 5 9 9 S 1.70956 * 110.38980 * 359.73310 * 8 7 6 10 10 C 1.46494 * 120.00512 * 179.97438 * 2 1 3 11 11 C 1.53500 * 114.20863 * 300.00259 * 10 2 1 12 12 N 1.47074 * 87.98361 * 87.71575 * 11 10 2 13 13 C 1.34783 * 136.05314 * 207.08795 * 12 11 10 14 14 O 1.21271 * 120.00220 * 0.02562 * 13 12 11 15 15 C 1.50695 * 119.99419 * 180.02562 * 13 12 11 16 16 S 1.81005 * 109.46912 * 180.02562 * 15 13 12 17 17 C 1.76203 * 99.99951 * 180.02562 * 16 15 13 18 18 H 1.07999 * 120.00153 * 359.97438 * 17 16 15 19 19 C 1.38795 * 119.99708 * 179.72516 * 17 16 15 20 20 N 1.31635 * 120.00475 * 0.02562 * 19 17 16 21 21 Si 1.86809 * 119.99868 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46914 * 90.00102 * 21 19 17 23 23 H 1.48502 * 109.46795 * 209.99703 * 21 19 17 24 24 H 1.48493 * 109.46972 * 329.99752 * 21 19 17 25 25 C 1.47065 * 87.88488 * 27.34397 * 12 11 10 26 26 H 1.08997 * 109.47403 * 276.31338 * 1 2 3 27 27 H 1.08995 * 109.47404 * 36.31797 * 1 2 3 28 28 H 1.09001 * 109.46515 * 156.31540 * 1 2 3 29 29 H 1.07998 * 122.91018 * 359.97438 * 6 5 3 30 30 H 1.07998 * 124.80969 * 179.97438 * 8 7 6 31 31 H 1.09000 * 113.28627 * 166.93225 * 10 2 1 32 32 H 1.09007 * 113.46714 * 332.93862 * 11 10 2 33 33 H 1.08993 * 113.47049 * 202.49675 * 11 10 2 34 34 H 1.08996 * 109.47842 * 59.99951 * 15 13 12 35 35 H 1.09007 * 109.47614 * 299.99367 * 15 13 12 36 36 H 0.96998 * 120.00294 * 180.02562 * 20 19 17 37 37 H 1.08992 * 113.46535 * 87.43761 * 25 12 11 38 38 H 1.09003 * 113.46471 * 217.88072 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3555 1.1675 0.0230 5 6 1.4056 2.4374 -0.0278 6 6 1.9484 3.6711 -0.1818 7 7 1.0750 4.6467 -0.1713 8 6 -0.1704 4.3286 -0.0199 9 16 -0.3389 2.6336 0.1249 10 6 2.1976 -1.2686 0.0006 11 6 1.9061 -2.1632 1.2134 12 7 0.7774 -2.7292 0.4592 13 6 -0.4050 -3.2996 0.7644 14 8 -0.7316 -3.4346 1.9244 15 6 -1.3210 -3.7695 -0.3360 16 16 -2.8179 -4.4837 0.3889 17 6 -3.6821 -4.9371 -1.0782 18 1 -3.2426 -4.7433 -2.0455 19 6 -4.9254 -5.5478 -0.9905 20 7 -5.4591 -5.7880 0.1886 21 14 -5.8419 -6.0279 -2.5459 22 1 -5.4662 -7.4109 -2.9349 23 1 -7.3047 -5.9634 -2.2982 24 1 -5.4835 -5.0909 -3.6407 25 6 1.5096 -2.4046 -0.7743 26 1 -0.3634 0.1130 1.0214 27 1 -0.3634 0.8280 -0.6086 28 1 -0.3632 -0.9411 -0.4128 29 1 3.0092 3.8347 -0.3017 30 1 -0.9879 5.0338 0.0070 31 1 3.2577 -1.1542 -0.2259 32 1 1.6006 -1.6070 2.0997 33 1 2.6959 -2.8855 1.4198 34 1 -0.8117 -4.5240 -0.9355 35 1 -1.5920 -2.9245 -0.9691 36 1 -6.3278 -6.2152 0.2498 37 1 2.1949 -3.1905 -1.0917 38 1 0.8664 -2.0540 -1.5814 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001536291779.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:30 Heat of formation + Delta-G solvation = 18.017371 kcal Electronic energy + Delta-G solvation = -24351.425171 eV Core-core repulsion = 20641.824752 eV Total energy + Delta-G solvation = -3709.600419 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.17679 -40.95437 -40.02103 -38.83304 -35.97796 -34.57653 -32.35308 -31.51678 -29.43824 -28.25578 -27.66748 -27.06684 -26.78378 -24.16994 -21.94302 -20.70998 -20.31687 -19.75614 -19.24242 -18.12229 -17.98842 -17.43626 -17.09430 -16.87237 -16.77459 -16.65376 -16.10217 -15.73083 -15.28418 -15.09302 -14.88396 -14.69376 -14.53942 -14.40870 -14.17927 -13.81564 -13.51092 -13.31910 -13.17901 -12.98567 -12.89076 -12.58605 -12.51764 -12.16898 -11.73123 -11.42842 -11.13674 -10.93133 -10.65197 -10.51171 -10.27604 -10.24450 -9.87431 -9.74987 -8.66844 -8.33994 -6.12263 -0.81033 0.17122 0.58731 1.20612 1.32829 1.43270 1.43457 1.52769 1.56304 1.61931 1.96995 2.00832 2.27670 3.00593 3.14033 3.16971 3.27922 3.45778 3.56847 3.80387 3.90049 4.12752 4.13479 4.22970 4.30450 4.33284 4.41315 4.45931 4.55291 4.59975 4.62174 4.71648 4.83838 5.00624 5.26381 5.42885 5.97102 6.20559 6.55317 6.56762 6.77934 7.07680 7.08485 8.74978 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.014481 B = 0.002757 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.097666 B =10155.059770 C =11321.429812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.586 5.586 3 C 0.603 3.397 4 O -0.552 6.552 5 C -0.325 4.325 6 C 0.118 3.882 7 N -0.508 5.508 8 C 0.011 3.989 9 S 0.238 5.762 10 C 0.115 3.885 11 C 0.091 3.909 12 N -0.651 5.651 13 C 0.563 3.437 14 O -0.565 6.565 15 C -0.120 4.120 16 S -0.148 6.148 17 C -0.544 4.544 18 H 0.084 0.916 19 C 0.015 3.985 20 N -0.911 5.911 21 Si 0.996 3.004 22 H -0.270 1.270 23 H -0.279 1.279 24 H -0.256 1.256 25 C 0.096 3.904 26 H 0.065 0.935 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.188 0.812 30 H 0.233 0.767 31 H 0.151 0.849 32 H 0.064 0.936 33 H 0.123 0.877 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.271 0.729 37 H 0.137 0.863 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.826 16.991 -5.607 23.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.317 5.317 3 C 0.392 3.608 4 O -0.432 6.432 5 C -0.450 4.450 6 C -0.041 4.041 7 N -0.222 5.222 8 C -0.281 4.281 9 S 0.494 5.506 10 C 0.010 3.990 11 C -0.032 4.032 12 N -0.388 5.388 13 C 0.352 3.648 14 O -0.443 6.443 15 C -0.271 4.271 16 S 0.079 5.921 17 C -0.692 4.692 18 H 0.102 0.898 19 C -0.190 4.190 20 N -0.548 5.548 21 Si 0.818 3.182 22 H -0.195 1.195 23 H -0.204 1.204 24 H -0.180 1.180 25 C -0.027 4.027 26 H 0.083 0.917 27 H 0.105 0.895 28 H 0.112 0.888 29 H 0.205 0.795 30 H 0.249 0.751 31 H 0.168 0.832 32 H 0.082 0.918 33 H 0.141 0.859 34 H 0.124 0.876 35 H 0.128 0.872 36 H 0.080 0.920 37 H 0.154 0.846 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 13.815 16.588 -3.653 21.894 hybrid contribution 0.311 -0.148 -1.682 1.717 sum 14.126 16.440 -5.335 22.322 Atomic orbital electron populations 1.22183 0.78783 1.04044 1.03081 1.47274 1.07094 1.05010 1.72331 1.16870 0.86182 0.82166 0.75608 1.90818 1.13484 1.87120 1.51768 1.25677 0.98654 0.98788 1.21831 1.22354 1.01635 0.85373 0.94720 1.66443 1.01861 1.36005 1.17904 1.29892 0.97892 1.02309 0.98051 1.84674 1.00842 1.02167 1.62880 1.22420 0.98509 0.81548 0.96499 1.23657 0.87696 0.95072 0.96795 1.49767 1.15748 1.60530 1.12774 1.19597 0.80616 0.75593 0.88953 1.90712 1.74759 1.56216 1.22623 1.23294 0.98838 1.04624 1.00327 1.85641 1.14937 1.77617 1.13901 1.23177 1.06565 1.46215 0.93196 0.89833 1.26095 0.97441 0.94724 1.00757 1.70178 1.17920 1.40966 1.25697 0.84984 0.76928 0.78920 0.77352 1.19535 1.20446 1.17976 1.23792 0.94315 0.95818 0.88727 0.91669 0.89482 0.88819 0.79484 0.75053 0.83196 0.91768 0.85913 0.87623 0.87236 0.92022 0.84560 0.88592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.11 8.19 127.77 1.05 2.16 16 2 N -0.59 -10.50 3.12 -826.10 -2.57 -13.08 16 3 C 0.60 12.63 7.64 86.45 0.66 13.29 16 4 O -0.55 -14.20 16.39 -4.30 -0.07 -14.27 16 5 C -0.33 -6.03 6.26 23.88 0.15 -5.88 16 6 C 0.12 2.23 11.10 84.23 0.93 3.16 16 7 N -0.51 -9.31 10.51 -202.57 -2.13 -11.44 16 8 C 0.01 0.14 12.22 130.60 1.60 1.74 16 9 S 0.24 3.16 18.15 -56.49 -1.03 2.14 16 10 C 0.11 1.69 4.67 45.55 0.21 1.91 16 11 C 0.09 1.67 8.24 83.18 0.69 2.36 16 12 N -0.65 -15.07 2.40 -857.76 -2.06 -17.13 16 13 C 0.56 19.58 7.48 87.65 0.66 20.23 16 14 O -0.56 -25.50 16.64 -3.00 -0.05 -25.55 16 15 C -0.12 -4.43 5.98 71.23 0.43 -4.00 16 16 S -0.15 -7.88 20.57 -56.49 -1.16 -9.04 16 17 C -0.54 -29.75 9.50 67.95 0.65 -29.10 16 18 H 0.08 4.21 7.80 -2.91 -0.02 4.19 16 19 C 0.01 0.81 5.49 84.86 0.47 1.27 16 20 N -0.91 -54.53 13.22 21.65 0.29 -54.24 16 21 Si 1.00 42.03 29.55 68.60 2.03 44.06 16 22 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 23 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 24 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 25 C 0.10 1.29 7.45 83.27 0.62 1.91 16 26 H 0.06 1.27 7.89 -2.39 -0.02 1.25 16 27 H 0.09 1.27 4.45 -21.04 -0.09 1.17 16 28 H 0.09 1.77 5.02 -2.39 -0.01 1.76 16 29 H 0.19 3.26 8.06 -2.91 -0.02 3.24 16 30 H 0.23 1.18 8.06 -2.91 -0.02 1.16 16 31 H 0.15 1.87 7.29 -2.39 -0.02 1.85 16 32 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.11 3.57 8.14 -2.40 -0.02 3.55 16 35 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 36 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 37 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.10 1.17 7.40 -2.39 -0.02 1.15 16 Total: -1.00 -81.11 351.09 2.37 -78.74 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 1.02 Total: 10.77 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: 8.10 Total: 9.04 kcal Atomic # 7 Polarization: -89.41 SS G_CDS: -6.47 Total: -95.88 kcal Atomic # 8 Polarization: -39.70 SS G_CDS: -0.12 Total: -39.82 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Atomic # 16 Polarization: -4.72 SS G_CDS: -2.19 Total: -6.91 kcal Total: -81.11 2.37 -78.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536291779.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.755 kcal (2) G-P(sol) polarization free energy of solvation -81.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds