Wall clock time and date at job start Sat Apr 11 2020 06:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35633 * 117.00219 * 2 1 4 4 C 1.38706 * 120.15453 * 359.72016 * 3 2 1 5 5 C 1.38054 * 120.09066 * 180.29796 * 4 3 2 6 6 S 1.76198 * 119.79699 * 179.97438 * 5 4 3 7 7 O 1.42099 * 106.40730 * 23.51518 * 6 5 4 8 8 O 1.42108 * 106.40344 * 156.43975 * 6 5 4 9 9 N 1.65608 * 107.21654 * 269.97842 * 6 5 4 10 10 C 1.36934 * 119.99919 * 90.00100 * 9 6 5 11 11 H 1.07998 * 119.99679 * 228.27332 * 10 9 6 12 12 C 1.38805 * 120.00090 * 48.28035 * 10 9 6 13 13 N 1.31614 * 120.00250 * 25.21701 * 12 10 9 14 14 Si 1.86800 * 119.99772 * 205.21708 * 12 10 9 15 15 H 1.48506 * 109.47038 * 60.00270 * 14 12 10 16 16 H 1.48506 * 109.47144 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47618 * 299.99894 * 14 12 10 18 18 C 1.46507 * 119.99808 * 269.99972 * 9 6 5 19 19 C 1.52994 * 117.49787 * 188.84968 * 18 9 6 20 20 C 1.52994 * 117.49763 * 120.18508 * 18 9 6 21 21 C 1.38562 * 120.40439 * 359.95853 * 5 4 3 22 22 C 1.37767 * 120.30615 * 0.04350 * 21 5 4 23 23 C 1.39765 * 119.90162 * 359.97438 * 22 21 5 24 24 C 1.47407 * 120.19301 * 180.02562 * 23 22 21 25 25 O 1.21513 * 119.99497 * 179.97438 * 24 23 22 26 26 O 1.34747 * 120.00002 * 359.96961 * 24 23 22 27 27 H 1.09000 * 109.47304 * 300.00042 * 1 2 3 28 28 H 1.08999 * 109.47101 * 60.00336 * 1 2 3 29 29 H 1.09005 * 109.47184 * 180.02562 * 1 2 3 30 30 H 1.08001 * 119.95664 * 0.25772 * 4 3 2 31 31 H 0.97008 * 120.00324 * 174.27257 * 13 12 10 32 32 H 1.09003 * 115.54722 * 334.52154 * 18 9 6 33 33 H 1.09000 * 117.49788 * 359.97438 * 19 18 9 34 34 H 1.09003 * 117.49929 * 145.02352 * 19 18 9 35 35 H 1.08998 * 117.49950 * 214.97994 * 20 18 9 36 36 H 1.09007 * 117.50102 * 359.97438 * 20 18 9 37 37 H 1.08000 * 119.84874 * 180.02562 * 21 5 4 38 38 H 1.08004 * 120.04704 * 179.97438 * 22 21 5 39 39 H 0.96697 * 116.99881 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0447 1.2085 0.0000 4 6 1.2925 2.3738 -0.0059 5 6 1.9207 3.6031 -0.0121 6 16 0.9575 5.0786 -0.0202 7 8 -0.3088 4.7343 0.5250 8 8 1.7843 6.1005 0.5197 9 7 0.6907 5.4810 -1.6043 10 6 -0.4127 4.9992 -2.2566 11 1 -0.3094 4.5510 -3.2337 12 6 -1.6639 5.0870 -1.6620 13 7 -1.9020 6.0195 -0.7643 14 14 -3.0098 3.8815 -2.1360 15 1 -2.5645 2.4978 -1.8322 16 1 -4.2412 4.1855 -1.3636 17 1 -3.2937 4.0024 -3.5886 18 6 1.6351 6.3526 -2.3077 19 6 1.2329 6.8559 -3.6953 20 6 2.3223 5.7900 -3.5534 21 6 3.3039 3.6838 -0.0116 22 6 4.0672 2.5369 -0.0059 23 6 3.4446 1.2856 0.0001 24 6 4.2550 0.0544 0.0068 25 8 3.7099 -1.0316 0.0124 26 8 5.6002 0.1332 0.0066 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 0.2138 2.3194 -0.0062 31 1 -2.7977 6.1343 -0.4099 32 1 2.2127 7.0271 -1.6755 33 1 0.2658 6.5383 -4.0851 34 1 1.5463 7.8614 -3.9764 35 1 3.3519 6.0946 -3.7411 36 1 2.0722 4.7712 -3.8495 37 1 3.7860 4.6502 -0.0161 38 1 5.1451 2.6047 -0.0060 39 1 6.0888 -0.7013 0.0115 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599457771.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:35 Heat of formation + Delta-G solvation = -125.708839 kcal Electronic energy + Delta-G solvation = -28730.494482 eV Core-core repulsion = 24539.616004 eV Total energy + Delta-G solvation = -4190.878478 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.53063 -39.22648 -37.27876 -37.13115 -35.93254 -35.75417 -34.23716 -33.42385 -31.43139 -30.76674 -30.00045 -27.22617 -25.10889 -24.69643 -22.14083 -21.66436 -21.27943 -20.64698 -19.08802 -18.48346 -17.98376 -17.04705 -16.51796 -16.19428 -15.89460 -15.81854 -15.41771 -15.21396 -15.15201 -14.42432 -14.33361 -14.05413 -13.76606 -13.41618 -13.06283 -12.65607 -12.56041 -12.35876 -11.85328 -11.58650 -11.54331 -11.47980 -11.37940 -11.23931 -11.00867 -10.93456 -10.72080 -10.54752 -10.51327 -10.45331 -10.39709 -10.08314 -9.72800 -9.47600 -9.05966 -8.81106 -8.13125 -7.67703 -6.70332 -4.29442 0.63036 1.58615 1.79534 2.61396 3.05261 3.09303 3.14080 3.16661 3.31811 3.78767 3.96796 4.44596 4.62038 4.76874 4.88891 5.09976 5.13435 5.25086 5.33900 5.35257 5.50162 5.63935 5.67739 5.69783 5.71470 5.76177 5.83148 6.02849 6.23928 6.25887 6.29637 6.35284 6.49266 6.60938 6.67555 6.84349 6.91167 7.22723 7.36145 7.44169 7.98096 8.02674 8.70480 9.13222 10.34134 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.012341 B = 0.005189 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.393047 B = 5394.970615 C = 6466.839269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.290 6.290 3 C 0.166 3.834 4 C -0.125 4.125 5 C -0.581 4.581 6 S 2.540 3.460 7 O -0.941 6.941 8 O -1.007 7.007 9 N -0.780 5.780 10 C -0.275 4.275 11 H 0.085 0.915 12 C 0.060 3.940 13 N -0.761 5.761 14 Si 0.923 3.077 15 H -0.268 1.268 16 H -0.279 1.279 17 H -0.270 1.270 18 C 0.095 3.905 19 C -0.162 4.162 20 C -0.212 4.212 21 C -0.091 4.091 22 C -0.051 4.051 23 C -0.147 4.147 24 C 0.527 3.473 25 O -0.500 6.500 26 O -0.516 6.516 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.150 0.850 31 H 0.284 0.716 32 H 0.122 0.878 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.140 0.860 38 H 0.143 0.857 39 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.897 -5.955 -2.595 9.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.202 6.202 3 C 0.119 3.881 4 C -0.144 4.144 5 C -0.656 4.656 6 S 2.638 3.362 7 O -0.929 6.929 8 O -0.996 6.996 9 N -0.601 5.601 10 C -0.425 4.425 11 H 0.103 0.897 12 C -0.160 4.160 13 N -0.395 5.395 14 Si 0.748 3.252 15 H -0.193 1.193 16 H -0.204 1.204 17 H -0.196 1.196 18 C -0.014 4.014 19 C -0.201 4.201 20 C -0.252 4.252 21 C -0.110 4.110 22 C -0.070 4.070 23 C -0.149 4.149 24 C 0.371 3.629 25 O -0.388 6.388 26 O -0.328 6.328 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.168 0.832 31 H 0.095 0.905 32 H 0.139 0.861 33 H 0.127 0.873 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.158 0.842 38 H 0.160 0.840 39 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 6.456 -5.703 -1.377 8.723 hybrid contribution -0.136 -1.638 -0.302 1.671 sum 6.320 -7.341 -1.680 9.831 Atomic orbital electron populations 1.23245 0.78151 1.04125 1.02402 1.86233 1.21359 1.25495 1.87082 1.19137 0.90595 0.85296 0.93116 1.21011 1.00802 0.90245 1.02392 1.33028 1.08236 1.22450 1.01850 1.11968 0.73121 0.73816 0.77279 1.93427 1.38105 1.83431 1.77937 1.93306 1.70347 1.56289 1.79654 1.52479 1.25896 1.50053 1.31670 1.19026 0.82739 1.37377 1.03319 0.89728 1.25724 0.99086 0.95751 0.95440 1.69804 1.23075 1.25031 1.21633 0.86055 0.79490 0.81127 0.78495 1.19253 1.20356 1.19553 1.21408 0.95441 0.96197 0.88345 1.23100 1.00113 0.97419 0.99499 1.23369 0.96758 0.99345 1.05775 1.20788 0.92254 0.98907 0.99025 1.21359 1.00330 0.90423 0.94907 1.18386 0.89390 0.91848 1.15245 1.20668 0.80339 0.89160 0.72726 1.90916 1.72709 1.29705 1.45501 1.84573 1.20157 1.41670 1.86422 0.92094 0.91827 0.87981 0.83247 0.90540 0.86087 0.87333 0.89650 0.89622 0.88971 0.84179 0.83957 0.73246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 101.05 0.99 1.22 16 2 O -0.29 -5.17 8.57 -40.48 -0.35 -5.52 16 3 C 0.17 3.10 6.70 -38.67 -0.26 2.85 16 4 C -0.12 -2.47 8.50 -39.48 -0.34 -2.81 16 5 C -0.58 -11.99 5.98 -39.53 -0.24 -12.23 16 6 S 2.54 60.44 5.44 -107.50 -0.59 59.85 16 7 O -0.94 -24.83 13.25 -57.17 -0.76 -25.59 16 8 O -1.01 -25.43 16.04 -57.17 -0.92 -26.35 16 9 N -0.78 -17.63 3.06 -53.43 -0.16 -17.80 16 10 C -0.28 -6.33 7.67 -15.06 -0.12 -6.44 16 11 H 0.09 1.82 7.75 -52.49 -0.41 1.42 16 12 C 0.06 1.43 4.00 -17.43 -0.07 1.36 16 13 N -0.76 -19.63 11.51 55.49 0.64 -18.99 16 14 Si 0.92 18.54 29.63 -169.99 -5.04 13.51 16 15 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 16 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 17 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 18 C 0.10 1.86 6.39 -67.93 -0.43 1.42 16 19 C -0.16 -2.74 9.84 -26.69 -0.26 -3.00 16 20 C -0.21 -3.44 10.27 -26.69 -0.27 -3.71 16 21 C -0.09 -1.64 9.49 -39.63 -0.38 -2.01 16 22 C -0.05 -0.82 9.61 -39.18 -0.38 -1.19 16 23 C -0.15 -2.53 5.89 -104.86 -0.62 -3.15 16 24 C 0.53 8.31 8.26 34.46 0.28 8.60 16 25 O -0.50 -9.11 15.95 -26.60 -0.42 -9.53 16 26 O -0.52 -5.92 12.68 -40.62 -0.52 -6.44 16 27 H 0.06 0.83 7.67 -51.93 -0.40 0.44 16 28 H 0.06 0.90 7.65 -51.93 -0.40 0.50 16 29 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.15 2.94 5.84 -52.49 -0.31 2.63 16 31 H 0.28 6.90 8.32 -40.82 -0.34 6.56 16 32 H 0.12 2.33 7.37 -51.93 -0.38 1.95 16 33 H 0.11 1.95 6.98 -51.93 -0.36 1.59 16 34 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 37 H 0.14 2.35 7.60 -52.49 -0.40 1.95 16 38 H 0.14 1.80 7.61 -52.48 -0.40 1.41 16 39 H 0.41 2.65 9.11 45.56 0.42 3.06 16 LS Contribution 348.33 15.07 5.25 5.25 Total: -1.00 -32.20 348.33 -8.40 -40.61 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -3.46 Total: 10.10 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: -2.08 Total: -19.10 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.48 Total: -36.78 kcal Atomic # 8 Polarization: -70.46 SS G_CDS: -2.96 Total: -73.42 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.04 Total: 13.51 kcal Atomic # 16 Polarization: 60.44 SS G_CDS: -0.59 Total: 59.85 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.20 -8.40 -40.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599457771.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.104 kcal (2) G-P(sol) polarization free energy of solvation -32.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds