Wall clock time and date at job start Sat Apr 11 2020 06:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35633 * 117.00219 * 2 1 4 4 C 1.38706 * 120.15453 * 359.72016 * 3 2 1 5 5 C 1.38054 * 120.09066 * 180.29796 * 4 3 2 6 6 S 1.76198 * 119.79699 * 179.97438 * 5 4 3 7 7 O 1.42099 * 106.40730 * 23.51518 * 6 5 4 8 8 O 1.42108 * 106.40344 * 156.43975 * 6 5 4 9 9 N 1.65608 * 107.21654 * 269.97842 * 6 5 4 10 10 C 1.36934 * 119.99919 * 90.00100 * 9 6 5 11 11 H 1.07998 * 119.99679 * 228.27332 * 10 9 6 12 12 C 1.38805 * 120.00090 * 48.28035 * 10 9 6 13 13 N 1.31614 * 120.00250 * 25.21701 * 12 10 9 14 14 Si 1.86800 * 119.99772 * 205.21708 * 12 10 9 15 15 H 1.48506 * 109.47038 * 60.00270 * 14 12 10 16 16 H 1.48506 * 109.47144 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47618 * 299.99894 * 14 12 10 18 18 C 1.46507 * 119.99808 * 269.99972 * 9 6 5 19 19 C 1.52994 * 117.49787 * 188.84968 * 18 9 6 20 20 C 1.52994 * 117.49763 * 120.18508 * 18 9 6 21 21 C 1.38562 * 120.40439 * 359.95853 * 5 4 3 22 22 C 1.37767 * 120.30615 * 0.04350 * 21 5 4 23 23 C 1.39765 * 119.90162 * 359.97438 * 22 21 5 24 24 C 1.47407 * 120.19301 * 180.02562 * 23 22 21 25 25 O 1.21513 * 119.99497 * 179.97438 * 24 23 22 26 26 O 1.34747 * 120.00002 * 359.96961 * 24 23 22 27 27 H 1.09000 * 109.47304 * 300.00042 * 1 2 3 28 28 H 1.08999 * 109.47101 * 60.00336 * 1 2 3 29 29 H 1.09005 * 109.47184 * 180.02562 * 1 2 3 30 30 H 1.08001 * 119.95664 * 0.25772 * 4 3 2 31 31 H 0.97008 * 120.00324 * 174.27257 * 13 12 10 32 32 H 1.09003 * 115.54722 * 334.52154 * 18 9 6 33 33 H 1.09000 * 117.49788 * 359.97438 * 19 18 9 34 34 H 1.09003 * 117.49929 * 145.02352 * 19 18 9 35 35 H 1.08998 * 117.49950 * 214.97994 * 20 18 9 36 36 H 1.09007 * 117.50102 * 359.97438 * 20 18 9 37 37 H 1.08000 * 119.84874 * 180.02562 * 21 5 4 38 38 H 1.08004 * 120.04704 * 179.97438 * 22 21 5 39 39 H 0.96697 * 116.99881 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0447 1.2085 0.0000 4 6 1.2925 2.3738 -0.0059 5 6 1.9207 3.6031 -0.0121 6 16 0.9575 5.0786 -0.0202 7 8 -0.3088 4.7343 0.5250 8 8 1.7843 6.1005 0.5197 9 7 0.6907 5.4810 -1.6043 10 6 -0.4127 4.9992 -2.2566 11 1 -0.3094 4.5510 -3.2337 12 6 -1.6639 5.0870 -1.6620 13 7 -1.9020 6.0195 -0.7643 14 14 -3.0098 3.8815 -2.1360 15 1 -2.5645 2.4978 -1.8322 16 1 -4.2412 4.1855 -1.3636 17 1 -3.2937 4.0024 -3.5886 18 6 1.6351 6.3526 -2.3077 19 6 1.2329 6.8559 -3.6953 20 6 2.3223 5.7900 -3.5534 21 6 3.3039 3.6838 -0.0116 22 6 4.0672 2.5369 -0.0059 23 6 3.4446 1.2856 0.0001 24 6 4.2550 0.0544 0.0068 25 8 3.7099 -1.0316 0.0124 26 8 5.6002 0.1332 0.0066 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 0.2138 2.3194 -0.0062 31 1 -2.7977 6.1343 -0.4099 32 1 2.2127 7.0271 -1.6755 33 1 0.2658 6.5383 -4.0851 34 1 1.5463 7.8614 -3.9764 35 1 3.3519 6.0946 -3.7411 36 1 2.0722 4.7712 -3.8495 37 1 3.7860 4.6502 -0.0161 38 1 5.1451 2.6047 -0.0060 39 1 6.0888 -0.7013 0.0115 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599457771.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:34 Heat of formation + Delta-G solvation = -147.857020 kcal Electronic energy + Delta-G solvation = -28731.454899 eV Core-core repulsion = 24539.616004 eV Total energy + Delta-G solvation = -4191.838895 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.81490 -40.45772 -38.78727 -38.49833 -37.65483 -37.03518 -36.14962 -35.12033 -32.84536 -32.46568 -31.37824 -28.43431 -26.85971 -26.05698 -23.47202 -22.98208 -22.58547 -22.18040 -20.82431 -19.94934 -19.18601 -18.52050 -17.97936 -17.77666 -17.39001 -17.12556 -16.99729 -16.81851 -16.39730 -16.06305 -15.63746 -15.53755 -15.21850 -14.86364 -14.45513 -14.12863 -13.91437 -13.82287 -13.54206 -13.12672 -12.97413 -12.84947 -12.77700 -12.58386 -12.54961 -12.38283 -12.30380 -12.29590 -12.10298 -12.07726 -11.84232 -11.64197 -11.31075 -10.95670 -10.56045 -10.47448 -9.52152 -9.33850 -8.47897 -6.10926 -0.78106 0.03246 0.18757 1.31328 1.47433 1.52554 1.58798 1.93935 2.06700 2.27811 2.41075 2.79807 2.96262 3.23140 3.46215 3.53294 3.69854 3.93266 4.06400 4.20177 4.21494 4.24618 4.30904 4.36841 4.41346 4.46523 4.50740 4.59519 4.85716 4.89079 4.94719 4.99332 5.14690 5.29719 5.43458 5.48529 5.52594 5.57740 5.78838 6.09861 6.23803 6.95900 6.95958 7.38728 8.56788 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.012341 B = 0.005189 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.393047 B = 5394.970615 C = 6466.839269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.300 6.300 3 C 0.158 3.842 4 C -0.138 4.138 5 C -0.600 4.600 6 S 2.544 3.456 7 O -0.978 6.978 8 O -1.032 7.032 9 N -0.790 5.790 10 C -0.279 4.279 11 H 0.097 0.903 12 C 0.021 3.979 13 N -0.807 5.807 14 Si 0.969 3.031 15 H -0.262 1.262 16 H -0.284 1.284 17 H -0.248 1.248 18 C 0.053 3.947 19 C -0.154 4.154 20 C -0.183 4.183 21 C -0.097 4.097 22 C -0.030 4.030 23 C -0.152 4.152 24 C 0.537 3.463 25 O -0.527 6.527 26 O -0.498 6.498 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.134 0.866 30 H 0.140 0.860 31 H 0.281 0.719 32 H 0.117 0.883 33 H 0.095 0.905 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.087 0.913 37 H 0.151 0.849 38 H 0.184 0.816 39 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.111 -7.461 -4.063 12.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.212 6.212 3 C 0.110 3.890 4 C -0.158 4.158 5 C -0.678 4.678 6 S 2.647 3.353 7 O -0.966 6.966 8 O -1.022 7.022 9 N -0.612 5.612 10 C -0.428 4.428 11 H 0.114 0.886 12 C -0.195 4.195 13 N -0.444 5.444 14 Si 0.791 3.209 15 H -0.187 1.187 16 H -0.209 1.209 17 H -0.172 1.172 18 C -0.055 4.055 19 C -0.193 4.193 20 C -0.223 4.223 21 C -0.116 4.116 22 C -0.048 4.048 23 C -0.154 4.154 24 C 0.382 3.618 25 O -0.418 6.418 26 O -0.312 6.312 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.152 0.848 30 H 0.158 0.842 31 H 0.091 0.909 32 H 0.134 0.866 33 H 0.113 0.887 34 H 0.130 0.870 35 H 0.136 0.864 36 H 0.106 0.894 37 H 0.169 0.831 38 H 0.201 0.799 39 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges 8.684 -7.179 -2.880 11.630 hybrid contribution -0.628 -1.242 0.172 1.402 sum 8.057 -8.420 -2.708 11.965 Atomic orbital electron populations 1.23505 0.76657 1.06190 1.02278 1.86226 1.22975 1.25077 1.86951 1.19269 0.91433 0.85096 0.93211 1.20924 1.00587 0.90692 1.03554 1.32538 1.09364 1.21279 1.04651 1.11302 0.72540 0.74031 0.77405 1.93374 1.40152 1.84185 1.78930 1.93253 1.70707 1.57788 1.80402 1.52370 1.26691 1.50784 1.31347 1.19302 0.82819 1.37070 1.03597 0.88558 1.26562 1.01234 0.96513 0.95160 1.69895 1.23349 1.27262 1.23845 0.85358 0.76899 0.79350 0.79326 1.18660 1.20947 1.17219 1.21666 0.96796 0.97561 0.89437 1.23171 1.00035 0.99193 0.96908 1.23398 0.98137 0.98915 1.01838 1.20997 0.91308 1.00400 0.98916 1.21716 1.02015 0.88872 0.92230 1.18755 0.89280 0.93325 1.14065 1.20316 0.81475 0.87916 0.72115 1.90915 1.73660 1.30439 1.46819 1.84497 1.17839 1.43551 1.85335 0.92152 0.92086 0.84813 0.84243 0.90899 0.86570 0.88686 0.86988 0.86396 0.89418 0.83129 0.79895 0.70271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.81 113.37 1.11 1.33 16 2 O -0.30 -10.46 8.57 -68.53 -0.59 -11.05 16 3 C 0.16 5.78 6.70 22.86 0.15 5.93 16 4 C -0.14 -5.52 8.50 22.34 0.19 -5.33 16 5 C -0.60 -24.91 5.98 22.30 0.13 -24.78 16 6 S 2.54 124.98 5.44 -56.49 -0.31 124.68 16 7 O -0.98 -54.09 13.25 -128.00 -1.70 -55.78 16 8 O -1.03 -53.75 16.04 -128.00 -2.05 -55.81 16 9 N -0.79 -36.35 3.06 -322.95 -0.99 -37.34 16 10 C -0.28 -13.00 7.67 84.03 0.64 -12.36 16 11 H 0.10 4.13 7.75 -2.91 -0.02 4.11 16 12 C 0.02 1.03 4.00 84.86 0.34 1.37 16 13 N -0.81 -43.41 11.51 21.65 0.25 -43.16 16 14 Si 0.97 38.13 29.63 68.60 2.03 40.16 16 15 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 16 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 17 H -0.25 -8.82 7.11 99.48 0.71 -8.11 16 18 C 0.05 2.07 6.39 44.99 0.29 2.36 16 19 C -0.15 -4.98 9.84 30.62 0.30 -4.67 16 20 C -0.18 -5.52 10.27 30.62 0.31 -5.20 16 21 C -0.10 -3.37 9.49 22.24 0.21 -3.16 16 22 C -0.03 -0.86 9.61 22.53 0.22 -0.65 16 23 C -0.15 -4.91 5.89 -20.02 -0.12 -5.03 16 24 C 0.54 15.31 8.26 70.24 0.58 15.89 16 25 O -0.53 -18.03 15.95 26.79 0.43 -17.60 16 26 O -0.50 -9.21 12.68 -56.57 -0.72 -9.92 16 27 H 0.06 1.67 7.67 -2.39 -0.02 1.65 16 28 H 0.06 1.71 7.65 -2.39 -0.02 1.70 16 29 H 0.13 2.79 8.14 -2.38 -0.02 2.77 16 30 H 0.14 5.72 5.84 -2.91 -0.02 5.71 16 31 H 0.28 14.37 8.32 -92.70 -0.77 13.60 16 32 H 0.12 4.52 7.37 -2.39 -0.02 4.50 16 33 H 0.09 3.34 6.98 -2.39 -0.02 3.33 16 34 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 35 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 36 H 0.09 2.74 8.14 -2.38 -0.02 2.72 16 37 H 0.15 4.84 7.60 -2.91 -0.02 4.82 16 38 H 0.18 3.72 7.61 -2.91 -0.02 3.70 16 39 H 0.43 3.62 9.11 -74.06 -0.67 2.94 16 Total: -1.00 -72.01 348.33 1.17 -70.84 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: 0.44 Total: 29.30 kcal Atomic # 6 Polarization: -38.66 SS G_CDS: 4.37 Total: -34.29 kcal Atomic # 7 Polarization: -79.77 SS G_CDS: -0.74 Total: -80.51 kcal Atomic # 8 Polarization: -145.54 SS G_CDS: -4.63 Total: -150.16 kcal Atomic # 14 Polarization: 38.13 SS G_CDS: 2.03 Total: 40.16 kcal Atomic # 16 Polarization: 124.98 SS G_CDS: -0.31 Total: 124.68 kcal Total: -72.01 1.17 -70.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599457771.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.021 kcal (2) G-P(sol) polarization free energy of solvation -72.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds