Wall clock time and date at job start Sat Apr 11 2020 06:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42107 * 108.57717 * 2 1 4 4 O 1.42098 * 108.57914 * 228.97760 * 2 1 3 5 5 C 1.81395 * 101.92301 * 114.48694 * 2 1 3 6 6 C 1.50706 * 109.47189 * 180.02562 * 5 2 1 7 7 C 1.38382 * 119.84518 * 270.31770 * 6 5 2 8 8 C 1.37933 * 120.14998 * 180.27473 * 7 6 5 9 9 C 1.39653 * 119.84263 * 359.43274 * 8 7 6 10 10 C 1.47725 * 120.14651 * 180.29694 * 9 8 7 11 11 O 1.21601 * 120.00069 * 323.10231 * 10 9 8 12 12 N 1.34774 * 120.00454 * 143.10947 * 10 9 8 13 13 C 1.36864 * 120.00661 * 186.34216 * 12 10 9 14 14 H 1.08001 * 119.99796 * 346.42278 * 13 12 10 15 15 C 1.39052 * 120.00319 * 166.42446 * 13 12 10 16 16 N 1.31360 * 119.99895 * 34.18624 * 15 13 12 17 17 Si 1.86803 * 119.99867 * 214.18625 * 15 13 12 18 18 H 1.48489 * 109.47032 * 60.00020 * 17 15 13 19 19 H 1.48501 * 109.46604 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47141 * 299.99807 * 17 15 13 21 21 C 1.46503 * 119.99443 * 6.33675 * 12 10 9 22 22 C 1.50703 * 109.47229 * 106.07072 * 21 12 10 23 23 O 1.20823 * 119.99613 * 359.97438 * 22 21 12 24 24 O 1.34221 * 120.00046 * 180.02562 * 22 21 12 25 25 C 1.39644 * 119.70224 * 0.26992 * 9 8 7 26 26 C 1.37939 * 119.84369 * 0.02562 * 25 9 8 27 27 H 1.08998 * 109.46641 * 305.51250 * 1 2 3 28 28 H 1.08994 * 109.47285 * 65.51435 * 1 2 3 29 29 H 1.09001 * 109.46519 * 185.51282 * 1 2 3 30 30 H 1.08995 * 109.47162 * 60.00007 * 5 2 1 31 31 H 1.08999 * 109.47215 * 299.99705 * 5 2 1 32 32 H 1.07998 * 119.92661 * 0.02562 * 7 6 5 33 33 H 1.07995 * 120.07614 * 179.69748 * 8 7 6 34 34 H 0.96994 * 119.99853 * 179.97438 * 16 15 13 35 35 H 1.09007 * 109.47386 * 226.07175 * 21 12 10 36 36 H 1.09002 * 109.47401 * 346.06906 * 21 12 10 37 37 H 0.96709 * 117.00140 * 180.02562 * 24 22 21 38 38 H 1.07995 * 120.07518 * 180.02562 * 25 9 8 39 39 H 1.08004 * 119.91962 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1888 -0.7356 1.6152 6 6 3.6828 -0.8171 1.7956 7 6 4.3669 -1.9439 1.3745 8 6 5.7335 -2.0275 1.5417 9 6 6.4282 -0.9667 2.1268 10 6 7.8927 -1.0464 2.3031 11 8 8.4131 -2.1056 2.5963 12 7 8.6522 0.0548 2.1392 13 6 10.0169 -0.0435 2.1740 14 1 10.4841 -0.9435 2.5456 15 6 10.8018 1.0153 1.7310 16 7 10.3984 2.2524 1.9113 17 14 12.4300 0.6786 0.8793 18 1 12.1909 -0.1275 -0.3446 19 1 13.0697 1.9662 0.5077 20 1 13.3238 -0.0705 1.7987 21 6 8.0169 1.3572 1.9236 22 6 8.1344 2.1869 3.1762 23 8 8.6912 1.7363 4.1492 24 8 7.6196 3.4260 3.2112 25 6 5.7324 0.1699 2.5438 26 6 4.3649 0.2376 2.3761 27 1 -0.3632 0.5970 0.8365 28 1 -0.3633 0.4259 -0.9352 29 1 -0.3632 -1.0230 0.0987 30 1 1.7611 -1.7369 1.6664 31 1 1.7612 -0.1170 2.4042 32 1 3.8290 -2.7613 0.9175 33 1 6.2655 -2.9095 1.2170 34 1 10.9461 2.9910 1.6026 35 1 8.5121 1.8712 1.0997 36 1 6.9642 1.2123 1.6812 37 1 7.7199 3.9200 4.0366 38 1 6.2636 0.9939 2.9966 39 1 3.8254 1.1159 2.6985 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607370351.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:52 Heat of formation + Delta-G solvation = -124.979940 kcal Electronic energy + Delta-G solvation = -27944.527217 eV Core-core repulsion = 23753.680347 eV Total energy + Delta-G solvation = -4190.846870 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -40.14021 -38.90130 -37.75400 -37.12700 -36.14357 -35.33091 -34.53613 -33.19911 -31.91089 -30.78588 -30.00138 -28.05097 -27.58256 -24.99206 -22.56747 -22.17877 -21.06909 -19.59623 -19.06682 -17.26401 -17.13531 -16.88663 -16.71845 -16.64413 -16.22606 -15.68488 -15.51021 -15.15824 -14.81307 -14.45597 -14.18721 -13.90457 -13.65201 -13.56172 -13.43315 -13.28716 -12.88446 -12.74118 -12.59945 -12.20667 -12.12698 -12.04048 -11.94625 -11.76450 -11.35558 -11.29371 -11.01359 -10.92346 -10.66481 -10.54791 -10.39012 -10.31342 -9.57168 -8.93448 -8.76722 -8.74498 -8.37851 -8.18278 -6.71384 -3.86908 -0.35386 1.21307 1.54963 2.51325 3.10645 3.20450 3.24903 3.35574 3.42020 3.51151 3.73029 3.90576 4.04933 4.25300 4.27998 4.35546 4.44410 4.58768 4.73309 4.98093 5.07536 5.16837 5.19396 5.26881 5.34335 5.55144 5.71331 5.83685 6.00050 6.17584 6.36793 6.49152 6.51147 6.59411 6.72155 7.04558 7.38922 7.48623 7.87757 8.24406 8.95528 9.00095 9.16695 9.72980 10.37591 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.016849 B = 0.003337 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.465770 B = 8387.937039 C = 8838.214733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.662 4.662 2 S 2.412 3.588 3 O -0.930 6.930 4 O -0.932 6.932 5 C -0.556 4.556 6 C -0.102 4.102 7 C -0.103 4.103 8 C -0.077 4.077 9 C -0.078 4.078 10 C 0.474 3.526 11 O -0.574 6.574 12 N -0.411 5.411 13 C -0.304 4.304 14 H 0.115 0.885 15 C 0.043 3.957 16 N -0.858 5.858 17 Si 0.923 3.077 18 H -0.270 1.270 19 H -0.284 1.284 20 H -0.270 1.270 21 C 0.105 3.895 22 C 0.494 3.506 23 O -0.502 6.502 24 O -0.531 6.531 25 C -0.117 4.117 26 C -0.102 4.102 27 H 0.127 0.873 28 H 0.128 0.872 29 H 0.127 0.873 30 H 0.139 0.861 31 H 0.140 0.860 32 H 0.131 0.869 33 H 0.136 0.864 34 H 0.277 0.723 35 H 0.128 0.872 36 H 0.106 0.894 37 H 0.393 0.607 38 H 0.135 0.865 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.373 0.260 -2.390 20.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.810 4.810 2 S 2.594 3.406 3 O -0.927 6.927 4 O -0.929 6.929 5 C -0.684 4.684 6 C -0.105 4.105 7 C -0.123 4.123 8 C -0.097 4.097 9 C -0.083 4.083 10 C 0.264 3.736 11 O -0.460 6.460 12 N -0.128 5.128 13 C -0.431 4.431 14 H 0.133 0.867 15 C -0.163 4.163 16 N -0.495 5.495 17 Si 0.748 3.252 18 H -0.195 1.195 19 H -0.209 1.209 20 H -0.195 1.195 21 C -0.020 4.020 22 C 0.335 3.665 23 O -0.387 6.387 24 O -0.342 6.342 25 C -0.135 4.135 26 C -0.121 4.121 27 H 0.146 0.854 28 H 0.146 0.854 29 H 0.145 0.855 30 H 0.158 0.842 31 H 0.158 0.842 32 H 0.149 0.851 33 H 0.154 0.846 34 H 0.088 0.912 35 H 0.145 0.855 36 H 0.123 0.877 37 H 0.249 0.751 38 H 0.152 0.848 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -19.352 -0.093 -3.039 19.589 hybrid contribution 0.279 0.353 0.960 1.060 sum -19.073 0.259 -2.079 19.188 Atomic orbital electron populations 1.30347 1.27640 1.11354 1.11679 1.08376 0.78002 0.76220 0.77960 1.93616 1.78648 1.34218 1.86218 1.93605 1.78704 1.66947 1.53652 1.29256 1.01740 1.14309 1.23045 1.18846 0.90933 0.96506 1.04167 1.21004 0.94438 0.97253 0.99559 1.21178 0.93332 0.98237 0.96904 1.20429 0.95223 0.94384 0.98223 1.17671 0.85101 0.84861 0.85949 1.90633 1.73286 1.29084 1.52960 1.43473 1.06523 1.03365 1.59398 1.19671 0.79347 1.03587 1.40462 0.86720 1.25305 1.00600 0.93884 0.96482 1.69845 1.40695 0.98913 1.40077 0.86044 0.80785 0.77874 0.80486 1.19477 1.20906 1.19540 1.21791 0.99884 0.85266 0.95081 1.23449 0.73901 0.79361 0.89837 1.90626 1.38798 1.72091 1.37170 1.84529 1.75454 1.30002 1.44264 1.21693 0.94125 0.97704 1.00008 1.20987 0.94211 0.98020 0.98853 0.85425 0.85357 0.85467 0.84246 0.84223 0.85120 0.84570 0.91184 0.85496 0.87726 0.75101 0.84755 0.85069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.60 10.62 101.05 1.07 -1.53 16 2 S 2.41 20.69 5.34 -107.50 -0.57 20.12 16 3 O -0.93 -11.79 18.10 -57.83 -1.05 -12.84 16 4 O -0.93 -11.69 18.10 -57.83 -1.05 -12.74 16 5 C -0.56 -4.06 5.92 36.01 0.21 -3.84 16 6 C -0.10 -1.30 5.15 -104.52 -0.54 -1.84 16 7 C -0.10 -1.44 9.68 -39.64 -0.38 -1.82 16 8 C -0.08 -1.34 9.62 -39.17 -0.38 -1.72 16 9 C -0.08 -1.58 5.44 -104.97 -0.57 -2.15 16 10 C 0.47 11.87 7.33 -12.39 -0.09 11.78 16 11 O -0.57 -16.13 16.48 5.28 0.09 -16.04 16 12 N -0.41 -10.55 2.34 -117.20 -0.27 -10.82 16 13 C -0.30 -8.43 8.64 -15.00 -0.13 -8.56 16 14 H 0.12 3.37 7.41 -52.49 -0.39 2.98 16 15 C 0.04 1.10 5.06 -17.45 -0.09 1.01 16 16 N -0.86 -21.80 8.86 55.50 0.49 -21.31 16 17 Si 0.92 20.28 29.67 -169.99 -5.04 15.23 16 18 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 19 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 C 0.10 2.36 4.83 -5.19 -0.03 2.33 16 22 C 0.49 11.13 4.74 36.01 0.17 11.30 16 23 O -0.50 -13.21 16.47 -18.75 -0.31 -13.52 16 24 O -0.53 -9.66 13.42 -39.23 -0.53 -10.18 16 25 C -0.12 -2.07 7.37 -39.17 -0.29 -2.36 16 26 C -0.10 -1.45 9.68 -39.64 -0.38 -1.84 16 27 H 0.13 0.25 8.14 -51.92 -0.42 -0.17 16 28 H 0.13 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.13 0.24 8.14 -51.92 -0.42 -0.18 16 30 H 0.14 0.59 8.09 -51.93 -0.42 0.17 16 31 H 0.14 0.60 8.08 -51.92 -0.42 0.19 16 32 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 33 H 0.14 2.30 8.03 -52.49 -0.42 1.88 16 34 H 0.28 6.67 8.31 -40.82 -0.34 6.33 16 35 H 0.13 2.94 6.33 -51.92 -0.33 2.61 16 36 H 0.11 2.05 3.86 -51.93 -0.20 1.85 16 37 H 0.39 5.44 9.10 45.56 0.41 5.85 16 38 H 0.13 2.47 4.29 -52.49 -0.23 2.24 16 39 H 0.13 1.49 8.06 -52.48 -0.42 1.07 16 LS Contribution 348.22 15.07 5.25 5.25 Total: -1.00 -39.31 348.22 -7.65 -46.96 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -3.24 Total: 9.11 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -1.42 Total: 0.78 kcal Atomic # 7 Polarization: -32.35 SS G_CDS: 0.22 Total: -32.14 kcal Atomic # 8 Polarization: -62.48 SS G_CDS: -2.84 Total: -65.32 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.04 Total: 15.23 kcal Atomic # 16 Polarization: 20.69 SS G_CDS: -0.57 Total: 20.12 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -39.31 -7.65 -46.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607370351.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.016 kcal (2) G-P(sol) polarization free energy of solvation -39.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds