Wall clock time and date at job start Sat Apr 11 2020 06:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42107 * 108.57717 * 2 1 4 4 O 1.42098 * 108.57914 * 228.97760 * 2 1 3 5 5 C 1.81395 * 101.92301 * 114.48694 * 2 1 3 6 6 C 1.50706 * 109.47189 * 180.02562 * 5 2 1 7 7 C 1.38382 * 119.84518 * 270.31770 * 6 5 2 8 8 C 1.37933 * 120.14998 * 180.27473 * 7 6 5 9 9 C 1.39653 * 119.84263 * 359.43274 * 8 7 6 10 10 C 1.47725 * 120.14651 * 180.29694 * 9 8 7 11 11 O 1.21601 * 120.00069 * 323.10231 * 10 9 8 12 12 N 1.34774 * 120.00454 * 143.10947 * 10 9 8 13 13 C 1.36864 * 120.00661 * 186.34216 * 12 10 9 14 14 H 1.08001 * 119.99796 * 346.42278 * 13 12 10 15 15 C 1.39052 * 120.00319 * 166.42446 * 13 12 10 16 16 N 1.31360 * 119.99895 * 34.18624 * 15 13 12 17 17 Si 1.86803 * 119.99867 * 214.18625 * 15 13 12 18 18 H 1.48489 * 109.47032 * 60.00020 * 17 15 13 19 19 H 1.48501 * 109.46604 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47141 * 299.99807 * 17 15 13 21 21 C 1.46503 * 119.99443 * 6.33675 * 12 10 9 22 22 C 1.50703 * 109.47229 * 106.07072 * 21 12 10 23 23 O 1.20823 * 119.99613 * 359.97438 * 22 21 12 24 24 O 1.34221 * 120.00046 * 180.02562 * 22 21 12 25 25 C 1.39644 * 119.70224 * 0.26992 * 9 8 7 26 26 C 1.37939 * 119.84369 * 0.02562 * 25 9 8 27 27 H 1.08998 * 109.46641 * 305.51250 * 1 2 3 28 28 H 1.08994 * 109.47285 * 65.51435 * 1 2 3 29 29 H 1.09001 * 109.46519 * 185.51282 * 1 2 3 30 30 H 1.08995 * 109.47162 * 60.00007 * 5 2 1 31 31 H 1.08999 * 109.47215 * 299.99705 * 5 2 1 32 32 H 1.07998 * 119.92661 * 0.02562 * 7 6 5 33 33 H 1.07995 * 120.07614 * 179.69748 * 8 7 6 34 34 H 0.96994 * 119.99853 * 179.97438 * 16 15 13 35 35 H 1.09007 * 109.47386 * 226.07175 * 21 12 10 36 36 H 1.09002 * 109.47401 * 346.06906 * 21 12 10 37 37 H 0.96709 * 117.00140 * 180.02562 * 24 22 21 38 38 H 1.07995 * 120.07518 * 180.02562 * 25 9 8 39 39 H 1.08004 * 119.91962 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1888 -0.7356 1.6152 6 6 3.6828 -0.8171 1.7956 7 6 4.3669 -1.9439 1.3745 8 6 5.7335 -2.0275 1.5417 9 6 6.4282 -0.9667 2.1268 10 6 7.8927 -1.0464 2.3031 11 8 8.4131 -2.1056 2.5963 12 7 8.6522 0.0548 2.1392 13 6 10.0169 -0.0435 2.1740 14 1 10.4841 -0.9435 2.5456 15 6 10.8018 1.0153 1.7310 16 7 10.3984 2.2524 1.9113 17 14 12.4300 0.6786 0.8793 18 1 12.1909 -0.1275 -0.3446 19 1 13.0697 1.9662 0.5077 20 1 13.3238 -0.0705 1.7987 21 6 8.0169 1.3572 1.9236 22 6 8.1344 2.1869 3.1762 23 8 8.6912 1.7363 4.1492 24 8 7.6196 3.4260 3.2112 25 6 5.7324 0.1699 2.5438 26 6 4.3649 0.2376 2.3761 27 1 -0.3632 0.5970 0.8365 28 1 -0.3633 0.4259 -0.9352 29 1 -0.3632 -1.0230 0.0987 30 1 1.7611 -1.7369 1.6664 31 1 1.7612 -0.1170 2.4042 32 1 3.8290 -2.7613 0.9175 33 1 6.2655 -2.9095 1.2170 34 1 10.9461 2.9910 1.6026 35 1 8.5121 1.8712 1.0997 36 1 6.9642 1.2123 1.6812 37 1 7.7199 3.9200 4.0366 38 1 6.2636 0.9939 2.9966 39 1 3.8254 1.1159 2.6985 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607370351.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:51 Heat of formation + Delta-G solvation = -157.095690 kcal Electronic energy + Delta-G solvation = -27945.919860 eV Core-core repulsion = 23753.680347 eV Total energy + Delta-G solvation = -4192.239514 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.79390 -40.48552 -39.38900 -37.88161 -37.15425 -36.89412 -36.41652 -34.57142 -33.55961 -32.11924 -30.40124 -29.68561 -28.87113 -26.75937 -23.83381 -23.59674 -22.78086 -21.22828 -19.72490 -19.18092 -18.87994 -18.30452 -17.84234 -17.49143 -17.33716 -17.03769 -16.86842 -16.51951 -16.35131 -15.93242 -15.82548 -15.47044 -15.07752 -14.55182 -14.46042 -14.02677 -13.86982 -13.80864 -13.79100 -13.65544 -13.49166 -13.42997 -12.97470 -12.92535 -12.90096 -12.54881 -12.41741 -12.21927 -12.15642 -12.05487 -11.90690 -11.58203 -11.47637 -10.89492 -10.64865 -10.18387 -9.96465 -9.68561 -8.67051 -5.93685 -0.99237 -0.03612 0.30033 1.32217 1.38140 1.48753 1.59900 1.80664 1.98002 2.14873 2.39928 2.64774 2.74039 2.85456 3.12014 3.20244 3.48591 3.67086 3.76985 3.92201 4.12596 4.15732 4.21046 4.33132 4.39295 4.50697 4.57337 4.71719 4.78737 4.86586 4.99066 5.07965 5.20931 5.32632 5.36247 5.39481 5.82290 5.89013 5.89646 6.26745 6.96370 7.16724 7.36973 7.79506 8.41281 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.016849 B = 0.003337 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.465770 B = 8387.937039 C = 8838.214733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.631 4.631 2 S 2.404 3.596 3 O -0.983 6.983 4 O -0.984 6.984 5 C -0.554 4.554 6 C -0.087 4.087 7 C -0.101 4.101 8 C -0.088 4.088 9 C -0.116 4.116 10 C 0.464 3.536 11 O -0.623 6.623 12 N -0.424 5.424 13 C -0.354 4.354 14 H 0.079 0.921 15 C 0.017 3.983 16 N -0.867 5.867 17 Si 0.986 3.014 18 H -0.269 1.269 19 H -0.264 1.264 20 H -0.276 1.276 21 C 0.106 3.894 22 C 0.505 3.495 23 O -0.547 6.547 24 O -0.514 6.514 25 C -0.126 4.126 26 C -0.102 4.102 27 H 0.158 0.842 28 H 0.134 0.866 29 H 0.158 0.842 30 H 0.182 0.818 31 H 0.182 0.818 32 H 0.168 0.832 33 H 0.127 0.873 34 H 0.284 0.716 35 H 0.118 0.882 36 H 0.133 0.867 37 H 0.415 0.585 38 H 0.123 0.877 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.997 1.170 -2.870 25.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.784 4.784 2 S 2.592 3.408 3 O -0.980 6.980 4 O -0.981 6.981 5 C -0.682 4.682 6 C -0.088 4.088 7 C -0.119 4.119 8 C -0.108 4.108 9 C -0.120 4.120 10 C 0.256 3.744 11 O -0.512 6.512 12 N -0.140 5.140 13 C -0.481 4.481 14 H 0.097 0.903 15 C -0.187 4.187 16 N -0.503 5.503 17 Si 0.808 3.192 18 H -0.194 1.194 19 H -0.188 1.188 20 H -0.202 1.202 21 C -0.019 4.019 22 C 0.347 3.653 23 O -0.436 6.436 24 O -0.326 6.326 25 C -0.145 4.145 26 C -0.120 4.120 27 H 0.177 0.823 28 H 0.152 0.848 29 H 0.177 0.823 30 H 0.200 0.800 31 H 0.199 0.801 32 H 0.185 0.815 33 H 0.145 0.855 34 H 0.095 0.905 35 H 0.135 0.865 36 H 0.150 0.850 37 H 0.275 0.725 38 H 0.140 0.860 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -23.954 0.890 -3.533 24.229 hybrid contribution 1.361 0.086 1.143 1.779 sum -22.593 0.976 -2.390 22.740 Atomic orbital electron populations 1.30074 1.20553 1.14289 1.13511 1.08111 0.80547 0.74533 0.77566 1.93562 1.81227 1.36365 1.86832 1.93553 1.81260 1.67581 1.55719 1.29367 0.97590 1.17865 1.23345 1.19433 0.94284 0.94688 1.00435 1.21436 0.92875 0.98962 0.98640 1.21275 0.95125 0.97202 0.97149 1.20134 0.92311 0.97134 1.02437 1.18584 0.87350 0.84053 0.84379 1.90556 1.75038 1.30701 1.54918 1.43566 1.06147 1.04696 1.59637 1.19460 0.80975 1.03360 1.44270 0.90313 1.25992 1.03538 0.93439 0.95769 1.69867 1.41794 0.99163 1.39499 0.85141 0.76843 0.78269 0.78950 1.19389 1.18800 1.20161 1.21855 1.01129 0.84038 0.94830 1.23330 0.72853 0.80106 0.89012 1.90610 1.41032 1.73295 1.38642 1.84449 1.74280 1.28181 1.45688 1.21617 0.95851 0.96499 1.00544 1.21414 0.92709 0.99751 0.98154 0.82344 0.84765 0.82338 0.80008 0.80081 0.81469 0.85482 0.90529 0.86451 0.84999 0.72500 0.85985 0.81591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -0.96 10.62 113.37 1.20 0.24 16 2 S 2.40 31.90 5.34 -56.49 -0.30 31.60 16 3 O -0.98 -22.55 18.10 -127.37 -2.31 -24.85 16 4 O -0.98 -22.43 18.10 -127.37 -2.30 -24.73 16 5 C -0.55 -4.79 5.92 71.24 0.42 -4.36 16 6 C -0.09 -1.89 5.15 -19.80 -0.10 -2.00 16 7 C -0.10 -2.57 9.68 22.23 0.22 -2.36 16 8 C -0.09 -3.14 9.62 22.54 0.22 -2.92 16 9 C -0.12 -4.93 5.44 -20.09 -0.11 -5.04 16 10 C 0.46 25.17 7.33 86.75 0.64 25.81 16 11 O -0.62 -38.27 16.48 -4.03 -0.07 -38.34 16 12 N -0.42 -23.37 2.34 -642.98 -1.50 -24.87 16 13 C -0.35 -21.12 8.64 84.10 0.73 -20.40 16 14 H 0.08 5.11 7.41 -2.91 -0.02 5.09 16 15 C 0.02 0.94 5.06 84.96 0.43 1.37 16 16 N -0.87 -45.08 8.86 21.68 0.19 -44.89 16 17 Si 0.99 43.07 29.67 68.60 2.04 45.10 16 18 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 19 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 20 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 21 C 0.11 4.97 4.83 85.63 0.41 5.38 16 22 C 0.50 23.33 4.74 71.24 0.34 23.66 16 23 O -0.55 -30.02 16.47 21.97 0.36 -29.66 16 24 O -0.51 -18.28 13.42 -51.32 -0.69 -18.97 16 25 C -0.13 -4.51 7.37 22.54 0.17 -4.35 16 26 C -0.10 -2.65 9.68 22.23 0.22 -2.43 16 27 H 0.16 -0.58 8.14 -2.39 -0.02 -0.60 16 28 H 0.13 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.16 -0.60 8.14 -2.39 -0.02 -0.61 16 30 H 0.18 0.15 8.09 -2.39 -0.02 0.13 16 31 H 0.18 0.19 8.08 -2.39 -0.02 0.17 16 32 H 0.17 3.00 8.06 -2.91 -0.02 2.97 16 33 H 0.13 4.59 8.03 -2.91 -0.02 4.56 16 34 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 35 H 0.12 5.67 6.33 -2.38 -0.02 5.65 16 36 H 0.13 5.37 3.86 -2.39 -0.01 5.36 16 37 H 0.42 10.94 9.10 -74.05 -0.67 10.26 16 38 H 0.12 4.59 4.29 -2.91 -0.01 4.57 16 39 H 0.17 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -96.18 348.22 0.64 -95.53 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 0.45 Total: 21.47 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: 4.77 Total: 12.62 kcal Atomic # 7 Polarization: -68.45 SS G_CDS: -1.31 Total: -69.76 kcal Atomic # 8 Polarization: -131.55 SS G_CDS: -5.00 Total: -136.56 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.04 Total: 45.10 kcal Atomic # 16 Polarization: 31.90 SS G_CDS: -0.30 Total: 31.60 kcal Total: -96.18 0.64 -95.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607370351.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.561 kcal (2) G-P(sol) polarization free energy of solvation -96.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds