Wall clock time and date at job start Sat Apr 11 2020 06:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42104 * 108.57890 * 2 1 4 4 O 1.42099 * 108.57800 * 228.97537 * 2 1 3 5 5 C 1.81399 * 101.92098 * 114.48681 * 2 1 3 6 6 C 1.50700 * 109.46890 * 180.02562 * 5 2 1 7 7 C 1.38397 * 119.92530 * 270.02094 * 6 5 2 8 8 C 1.38355 * 120.30706 * 180.02562 * 7 6 5 9 9 C 1.37953 * 120.15301 * 359.69527 * 8 7 6 10 10 C 1.39630 * 119.84193 * 0.55734 * 9 8 7 11 11 C 1.47726 * 120.14872 * 179.74516 * 10 9 8 12 12 O 1.21594 * 120.00037 * 148.64179 * 11 10 9 13 13 N 1.34774 * 120.00201 * 328.63280 * 11 10 9 14 14 C 1.36871 * 119.99728 * 0.02562 * 13 11 10 15 15 H 1.07999 * 120.00404 * 312.03646 * 14 13 11 16 16 C 1.39055 * 120.00165 * 132.04049 * 14 13 11 17 17 N 1.31361 * 120.00133 * 164.83628 * 16 14 13 18 18 Si 1.86805 * 119.99818 * 344.83425 * 16 14 13 19 19 H 1.48506 * 109.46775 * 92.28608 * 18 16 14 20 20 H 1.48494 * 109.47262 * 212.28562 * 18 16 14 21 21 H 1.48504 * 109.47198 * 332.28897 * 18 16 14 22 22 C 1.46503 * 120.00404 * 179.97438 * 13 11 10 23 23 C 1.50701 * 109.46584 * 83.85419 * 22 13 11 24 24 O 1.20820 * 120.00407 * 355.87978 * 23 22 13 25 25 O 1.34232 * 119.99576 * 175.87617 * 23 22 13 26 26 C 1.37908 * 119.92598 * 90.00472 * 6 5 2 27 27 H 1.09003 * 109.47316 * 305.51383 * 1 2 3 28 28 H 1.08997 * 109.47492 * 65.51237 * 1 2 3 29 29 H 1.08999 * 109.47229 * 185.51218 * 1 2 3 30 30 H 1.08997 * 109.46945 * 60.00619 * 5 2 1 31 31 H 1.08993 * 109.47103 * 299.99739 * 5 2 1 32 32 H 1.08004 * 119.84405 * 359.97438 * 7 6 5 33 33 H 1.08002 * 119.92220 * 179.97438 * 8 7 6 34 34 H 1.07998 * 120.07993 * 180.29975 * 9 8 7 35 35 H 0.97000 * 119.99822 * 179.97438 * 17 16 14 36 36 H 1.09005 * 109.46767 * 323.85989 * 22 13 11 37 37 H 1.08992 * 109.47198 * 203.85681 * 22 13 11 38 38 H 0.96698 * 116.99878 * 180.02562 * 25 23 22 39 39 H 1.08004 * 120.07759 * 0.03402 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6152 6 6 3.6826 -0.8171 1.7956 7 6 4.3676 -1.9458 1.3806 8 6 5.7391 -2.0292 1.5429 9 6 6.4341 -0.9836 2.1146 10 6 5.7487 0.1559 2.5404 11 6 6.4854 1.2772 3.1586 12 8 6.0874 2.4175 3.0175 13 7 7.5986 1.0364 3.8791 14 6 8.0469 -0.2471 4.0376 15 1 7.3593 -1.0270 4.3298 16 6 9.3876 -0.5469 3.8225 17 7 9.8832 -1.6850 4.2522 18 14 10.4838 0.6688 2.9225 19 1 11.1479 1.5598 3.9076 20 1 11.5143 -0.0712 2.1508 21 1 9.6605 1.4842 1.9937 22 6 8.3296 2.1485 4.4917 23 6 7.6951 2.4995 5.8127 24 8 6.6878 1.9348 6.1681 25 8 8.2491 3.4394 6.5946 26 6 4.3641 0.2333 2.3736 27 1 -0.3634 0.5970 0.8365 28 1 -0.3634 0.4259 -0.9352 29 1 -0.3633 -1.0229 0.0987 30 1 1.7611 -1.7369 1.6664 31 1 1.7610 -0.1171 2.4042 32 1 3.8290 -2.7656 0.9288 33 1 6.2674 -2.9131 1.2172 34 1 7.5053 -1.0480 2.2363 35 1 10.8184 -1.8943 4.1019 36 1 8.2947 3.0143 3.8304 37 1 9.3671 1.8562 4.6531 38 1 7.8063 3.6300 7.4329 39 1 3.8283 1.1134 2.6973 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607370939.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:56 Heat of formation + Delta-G solvation = -145.976854 kcal Electronic energy + Delta-G solvation = -27819.193707 eV Core-core repulsion = 23627.436342 eV Total energy + Delta-G solvation = -4191.757365 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -40.08387 -39.25397 -37.86387 -36.97770 -35.99702 -35.62114 -35.05021 -32.85867 -32.20886 -30.73242 -29.87714 -28.39774 -26.87705 -25.24357 -23.09026 -21.47549 -21.33190 -19.37203 -18.88969 -17.82094 -17.66267 -16.77032 -16.71912 -16.16384 -16.00683 -15.91111 -15.52848 -15.37080 -15.01798 -14.61235 -14.45499 -13.77478 -13.63800 -13.48193 -13.42555 -12.90003 -12.83332 -12.73547 -12.59674 -12.55461 -12.16096 -12.05761 -11.97819 -11.81559 -11.23900 -11.17800 -11.15970 -11.03230 -10.91127 -10.67821 -10.56799 -10.23325 -10.00320 -9.43659 -8.89178 -8.46929 -8.26479 -7.98712 -6.65970 -4.39028 -0.18195 1.50132 1.81962 2.67066 2.81732 2.91039 3.08357 3.15841 3.25351 3.57303 3.72069 3.87778 3.92923 4.17212 4.37206 4.49640 4.54129 4.56763 4.79453 4.90315 5.31130 5.37167 5.38574 5.46692 5.60048 5.73094 5.81858 5.90450 5.96358 5.98301 6.36237 6.41204 6.72314 6.96185 6.97058 7.06871 7.08101 7.40778 7.82430 8.09360 8.44978 8.70479 9.03452 9.38549 10.41412 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.015172 B = 0.003701 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.091333 B = 7564.019548 C = 8569.862353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.663 4.663 2 S 2.410 3.590 3 O -0.928 6.928 4 O -0.936 6.936 5 C -0.550 4.550 6 C -0.125 4.125 7 C -0.088 4.088 8 C -0.140 4.140 9 C -0.044 4.044 10 C -0.102 4.102 11 C 0.542 3.458 12 O -0.577 6.577 13 N -0.449 5.449 14 C -0.347 4.347 15 H 0.109 0.891 16 C 0.068 3.932 17 N -0.849 5.849 18 Si 0.860 3.140 19 H -0.267 1.267 20 H -0.277 1.277 21 H -0.253 1.253 22 C 0.108 3.892 23 C 0.467 3.533 24 O -0.501 6.501 25 O -0.526 6.526 26 C -0.054 4.054 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.126 0.874 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.170 0.830 35 H 0.280 0.720 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.400 0.600 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.727 0.080 -3.710 12.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.811 4.811 2 S 2.593 3.407 3 O -0.926 6.926 4 O -0.933 6.933 5 C -0.678 4.678 6 C -0.127 4.127 7 C -0.107 4.107 8 C -0.158 4.158 9 C -0.062 4.062 10 C -0.105 4.105 11 C 0.333 3.667 12 O -0.460 6.460 13 N -0.170 5.170 14 C -0.474 4.474 15 H 0.127 0.873 16 C -0.141 4.141 17 N -0.482 5.482 18 Si 0.685 3.315 19 H -0.193 1.193 20 H -0.203 1.203 21 H -0.177 1.177 22 C -0.017 4.017 23 C 0.307 3.693 24 O -0.387 6.387 25 O -0.338 6.338 26 C -0.074 4.074 27 H 0.146 0.854 28 H 0.145 0.855 29 H 0.145 0.855 30 H 0.156 0.844 31 H 0.157 0.843 32 H 0.142 0.858 33 H 0.146 0.854 34 H 0.187 0.813 35 H 0.090 0.910 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.258 0.742 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.305 0.565 -4.699 12.256 hybrid contribution -0.259 0.173 1.110 1.153 sum -11.564 0.738 -3.588 12.131 Atomic orbital electron populations 1.30355 1.27876 1.11269 1.11599 1.08409 0.77927 0.76278 0.78110 1.93631 1.78485 1.34197 1.86243 1.93584 1.78752 1.67023 1.53922 1.29177 1.01912 1.14008 1.22677 1.18555 0.90833 0.96837 1.06451 1.21160 0.95071 0.96532 0.97964 1.21183 0.93697 0.99826 1.01087 1.22536 1.03677 0.90169 0.89832 1.19751 0.93194 0.95713 1.01830 1.18315 0.81873 0.87842 0.78627 1.90668 1.69098 1.22783 1.63491 1.43171 1.24416 1.06207 1.43195 1.19111 0.95494 0.83636 1.49188 0.87349 1.25507 0.97029 0.96288 0.95270 1.69678 1.15225 1.23210 1.40082 0.87096 0.81193 0.81756 0.81440 1.19286 1.20313 1.17663 1.21386 0.97229 0.94066 0.89049 1.24425 0.82666 0.75481 0.86736 1.90660 1.24670 1.50401 1.72938 1.84571 1.58202 1.56349 1.34632 1.21087 0.93528 0.97286 0.95522 0.85413 0.85471 0.85521 0.84409 0.84335 0.85823 0.85398 0.81302 0.90960 0.87194 0.87068 0.74249 0.85139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -3.88 10.62 101.05 1.07 -2.81 16 2 S 2.41 26.32 5.34 -107.50 -0.57 25.75 16 3 O -0.93 -14.52 18.10 -57.83 -1.05 -15.57 16 4 O -0.94 -13.28 18.10 -57.83 -1.05 -14.33 16 5 C -0.55 -5.55 5.93 36.01 0.21 -5.34 16 6 C -0.13 -1.95 5.13 -104.68 -0.54 -2.49 16 7 C -0.09 -1.34 9.69 -39.48 -0.38 -1.72 16 8 C -0.14 -2.36 10.03 -39.64 -0.40 -2.76 16 9 C -0.04 -0.88 7.98 -39.17 -0.31 -1.19 16 10 C -0.10 -2.21 5.53 -104.97 -0.58 -2.79 16 11 C 0.54 13.11 7.11 -12.38 -0.09 13.02 16 12 O -0.58 -14.84 16.42 5.28 0.09 -14.76 16 13 N -0.45 -10.64 1.58 -117.21 -0.18 -10.82 16 14 C -0.35 -8.51 6.33 -15.00 -0.09 -8.60 16 15 H 0.11 2.88 7.13 -52.49 -0.37 2.51 16 16 C 0.07 1.65 4.93 -17.45 -0.09 1.56 16 17 N -0.85 -21.45 13.95 55.50 0.77 -20.68 16 18 Si 0.86 18.26 25.21 -169.99 -4.29 13.97 16 19 H -0.27 -5.39 6.74 56.52 0.38 -5.01 16 20 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 21 H -0.25 -5.45 7.11 56.52 0.40 -5.05 16 22 C 0.11 2.30 4.46 -5.19 -0.02 2.28 16 23 C 0.47 9.67 8.36 36.01 0.30 9.98 16 24 O -0.50 -11.93 16.98 -18.74 -0.32 -12.25 16 25 O -0.53 -8.46 13.42 -39.26 -0.53 -8.99 16 26 C -0.05 -1.04 9.25 -39.17 -0.36 -1.40 16 27 H 0.13 0.53 8.14 -51.92 -0.42 0.10 16 28 H 0.13 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.13 0.45 8.14 -51.92 -0.42 0.03 16 30 H 0.14 0.89 8.08 -51.93 -0.42 0.47 16 31 H 0.14 1.08 8.08 -51.93 -0.42 0.66 16 32 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 33 H 0.13 1.84 8.06 -52.49 -0.42 1.41 16 34 H 0.17 3.63 5.24 -52.49 -0.28 3.35 16 35 H 0.28 6.59 8.31 -40.82 -0.34 6.26 16 36 H 0.11 2.20 7.61 -51.93 -0.40 1.80 16 37 H 0.11 2.29 4.44 -51.93 -0.23 2.06 16 38 H 0.40 4.47 9.10 45.56 0.41 4.89 16 39 H 0.13 2.44 7.94 -52.48 -0.42 2.02 16 LS Contribution 351.89 15.07 5.30 5.30 Total: -1.00 -36.77 351.89 -6.48 -43.25 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -3.39 Total: 11.38 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -1.28 Total: -2.27 kcal Atomic # 7 Polarization: -32.09 SS G_CDS: 0.59 Total: -31.50 kcal Atomic # 8 Polarization: -63.04 SS G_CDS: -2.85 Total: -65.89 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -4.29 Total: 13.97 kcal Atomic # 16 Polarization: 26.32 SS G_CDS: -0.57 Total: 25.75 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.77 -6.48 -43.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607370939.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.725 kcal (2) G-P(sol) polarization free energy of solvation -36.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds