Wall clock time and date at job start Sat Apr 11 2020 06:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42104 * 108.57890 * 2 1 4 4 O 1.42099 * 108.57800 * 228.97537 * 2 1 3 5 5 C 1.81399 * 101.92098 * 114.48681 * 2 1 3 6 6 C 1.50700 * 109.46890 * 180.02562 * 5 2 1 7 7 C 1.38397 * 119.92530 * 270.02094 * 6 5 2 8 8 C 1.38355 * 120.30706 * 180.02562 * 7 6 5 9 9 C 1.37953 * 120.15301 * 359.69527 * 8 7 6 10 10 C 1.39630 * 119.84193 * 0.55734 * 9 8 7 11 11 C 1.47726 * 120.14872 * 179.74516 * 10 9 8 12 12 O 1.21594 * 120.00037 * 148.64179 * 11 10 9 13 13 N 1.34774 * 120.00201 * 328.63280 * 11 10 9 14 14 C 1.36871 * 119.99728 * 0.02562 * 13 11 10 15 15 H 1.07999 * 120.00404 * 312.03646 * 14 13 11 16 16 C 1.39055 * 120.00165 * 132.04049 * 14 13 11 17 17 N 1.31361 * 120.00133 * 164.83628 * 16 14 13 18 18 Si 1.86805 * 119.99818 * 344.83425 * 16 14 13 19 19 H 1.48506 * 109.46775 * 92.28608 * 18 16 14 20 20 H 1.48494 * 109.47262 * 212.28562 * 18 16 14 21 21 H 1.48504 * 109.47198 * 332.28897 * 18 16 14 22 22 C 1.46503 * 120.00404 * 179.97438 * 13 11 10 23 23 C 1.50701 * 109.46584 * 83.85419 * 22 13 11 24 24 O 1.20820 * 120.00407 * 355.87978 * 23 22 13 25 25 O 1.34232 * 119.99576 * 175.87617 * 23 22 13 26 26 C 1.37908 * 119.92598 * 90.00472 * 6 5 2 27 27 H 1.09003 * 109.47316 * 305.51383 * 1 2 3 28 28 H 1.08997 * 109.47492 * 65.51237 * 1 2 3 29 29 H 1.08999 * 109.47229 * 185.51218 * 1 2 3 30 30 H 1.08997 * 109.46945 * 60.00619 * 5 2 1 31 31 H 1.08993 * 109.47103 * 299.99739 * 5 2 1 32 32 H 1.08004 * 119.84405 * 359.97438 * 7 6 5 33 33 H 1.08002 * 119.92220 * 179.97438 * 8 7 6 34 34 H 1.07998 * 120.07993 * 180.29975 * 9 8 7 35 35 H 0.97000 * 119.99822 * 179.97438 * 17 16 14 36 36 H 1.09005 * 109.46767 * 323.85989 * 22 13 11 37 37 H 1.08992 * 109.47198 * 203.85681 * 22 13 11 38 38 H 0.96698 * 116.99878 * 180.02562 * 25 23 22 39 39 H 1.08004 * 120.07759 * 0.03402 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6152 6 6 3.6826 -0.8171 1.7956 7 6 4.3676 -1.9458 1.3806 8 6 5.7391 -2.0292 1.5429 9 6 6.4341 -0.9836 2.1146 10 6 5.7487 0.1559 2.5404 11 6 6.4854 1.2772 3.1586 12 8 6.0874 2.4175 3.0175 13 7 7.5986 1.0364 3.8791 14 6 8.0469 -0.2471 4.0376 15 1 7.3593 -1.0270 4.3298 16 6 9.3876 -0.5469 3.8225 17 7 9.8832 -1.6850 4.2522 18 14 10.4838 0.6688 2.9225 19 1 11.1479 1.5598 3.9076 20 1 11.5143 -0.0712 2.1508 21 1 9.6605 1.4842 1.9937 22 6 8.3296 2.1485 4.4917 23 6 7.6951 2.4995 5.8127 24 8 6.6878 1.9348 6.1681 25 8 8.2491 3.4394 6.5946 26 6 4.3641 0.2333 2.3736 27 1 -0.3634 0.5970 0.8365 28 1 -0.3634 0.4259 -0.9352 29 1 -0.3633 -1.0229 0.0987 30 1 1.7611 -1.7369 1.6664 31 1 1.7610 -0.1171 2.4042 32 1 3.8290 -2.7656 0.9288 33 1 6.2674 -2.9131 1.2172 34 1 7.5053 -1.0480 2.2363 35 1 10.8184 -1.8943 4.1019 36 1 8.2947 3.0143 3.8304 37 1 9.3671 1.8562 4.6531 38 1 7.8063 3.6300 7.4329 39 1 3.8283 1.1134 2.6973 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607370939.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:55 Heat of formation + Delta-G solvation = -175.791165 kcal Electronic energy + Delta-G solvation = -27820.486553 eV Core-core repulsion = 23627.436342 eV Total energy + Delta-G solvation = -4193.050210 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.77215 -40.80014 -39.40586 -37.93688 -37.26723 -36.95417 -36.83559 -34.12046 -34.05687 -32.17625 -30.46656 -29.97184 -28.03287 -27.10997 -24.64091 -22.90454 -22.82814 -21.10357 -19.84846 -19.43473 -19.27969 -18.38645 -17.54408 -17.53247 -17.26520 -17.19996 -16.89100 -16.81960 -16.62132 -16.11890 -15.99870 -15.37430 -15.05337 -14.59355 -14.40001 -14.28154 -14.19087 -13.87570 -13.86288 -13.58322 -13.54853 -13.47413 -13.04718 -12.99957 -12.95956 -12.71290 -12.54663 -12.37264 -12.18624 -12.04969 -11.99479 -11.72870 -11.59495 -11.25208 -10.71492 -9.97049 -9.81244 -9.58614 -8.54172 -6.30719 -0.98856 0.03373 0.46233 1.15251 1.19997 1.34687 1.44398 1.62922 1.92047 2.08741 2.14609 2.50212 2.72377 2.81729 3.05655 3.14528 3.52944 3.78456 3.91901 4.00396 4.11062 4.15116 4.17799 4.28589 4.35109 4.36529 4.52086 4.59127 4.63429 4.96171 5.00319 5.08457 5.25846 5.37952 5.54286 5.55681 5.60386 5.96319 6.00027 6.12897 6.82251 6.95716 7.15443 7.53011 8.56775 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.015172 B = 0.003701 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.091333 B = 7564.019548 C = 8569.862353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.628 4.628 2 S 2.401 3.599 3 O -0.992 6.992 4 O -0.978 6.978 5 C -0.551 4.551 6 C -0.120 4.120 7 C -0.083 4.083 8 C -0.140 4.140 9 C -0.066 4.066 10 C -0.139 4.139 11 C 0.531 3.469 12 O -0.606 6.606 13 N -0.454 5.454 14 C -0.342 4.342 15 H 0.076 0.924 16 C 0.042 3.958 17 N -0.882 5.882 18 Si 0.907 3.093 19 H -0.243 1.243 20 H -0.271 1.271 21 H -0.263 1.263 22 C 0.096 3.904 23 C 0.474 3.526 24 O -0.539 6.539 25 O -0.506 6.506 26 C -0.075 4.075 27 H 0.154 0.846 28 H 0.138 0.862 29 H 0.163 0.837 30 H 0.186 0.814 31 H 0.164 0.836 32 H 0.168 0.832 33 H 0.153 0.847 34 H 0.147 0.853 35 H 0.286 0.714 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.426 0.574 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.956 -0.599 -4.050 14.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.782 4.782 2 S 2.590 3.410 3 O -0.989 6.989 4 O -0.975 6.975 5 C -0.678 4.678 6 C -0.121 4.121 7 C -0.101 4.101 8 C -0.158 4.158 9 C -0.084 4.084 10 C -0.142 4.142 11 C 0.323 3.677 12 O -0.491 6.491 13 N -0.175 5.175 14 C -0.470 4.470 15 H 0.094 0.906 16 C -0.165 4.165 17 N -0.517 5.517 18 Si 0.729 3.271 19 H -0.168 1.168 20 H -0.197 1.197 21 H -0.187 1.187 22 C -0.028 4.028 23 C 0.316 3.684 24 O -0.428 6.428 25 O -0.319 6.319 26 C -0.095 4.095 27 H 0.172 0.828 28 H 0.156 0.844 29 H 0.181 0.819 30 H 0.204 0.796 31 H 0.182 0.818 32 H 0.185 0.815 33 H 0.170 0.830 34 H 0.164 0.836 35 H 0.096 0.904 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.287 0.713 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -13.446 -0.093 -5.003 14.347 hybrid contribution 0.241 0.364 1.243 1.317 sum -13.205 0.271 -3.761 13.732 Atomic orbital electron populations 1.30053 1.20129 1.14490 1.13499 1.08171 0.80768 0.74457 0.77585 1.93566 1.81446 1.36977 1.86921 1.93531 1.81320 1.67293 1.55354 1.29286 0.98071 1.17526 1.22964 1.19068 0.94059 0.95294 1.03672 1.21696 0.94485 0.97476 0.96480 1.21498 0.94888 0.99397 1.00016 1.22315 1.02804 0.91255 0.92055 1.19831 0.94519 0.95890 1.03955 1.18869 0.82065 0.88336 0.78415 1.90609 1.69880 1.23895 1.64747 1.43212 1.24525 1.06405 1.43364 1.18747 0.95269 0.83681 1.49261 0.90588 1.25908 0.97665 0.97582 0.95314 1.69730 1.15959 1.24702 1.41312 0.86365 0.79695 0.80282 0.80736 1.16776 1.19660 1.18707 1.21514 0.97454 0.93877 0.89971 1.24126 0.81903 0.75585 0.86786 1.90651 1.26307 1.52077 1.73807 1.84483 1.57494 1.54301 1.35641 1.21228 0.92767 0.98536 0.96987 0.82774 0.84385 0.81870 0.79603 0.81803 0.81454 0.82978 0.83584 0.90401 0.86020 0.86154 0.71283 0.85868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -4.08 10.62 113.37 1.20 -2.88 16 2 S 2.40 47.42 5.34 -56.49 -0.30 47.12 16 3 O -0.99 -31.34 18.10 -127.37 -2.31 -33.64 16 4 O -0.98 -26.21 18.10 -127.37 -2.30 -28.52 16 5 C -0.55 -9.27 5.93 71.24 0.42 -8.85 16 6 C -0.12 -3.60 5.13 -19.90 -0.10 -3.71 16 7 C -0.08 -2.37 9.69 22.34 0.22 -2.15 16 8 C -0.14 -4.73 10.03 22.23 0.22 -4.51 16 9 C -0.07 -2.79 7.98 22.54 0.18 -2.61 16 10 C -0.14 -6.41 5.53 -20.09 -0.11 -6.52 16 11 C 0.53 27.16 7.11 86.75 0.62 27.78 16 12 O -0.61 -32.84 16.42 -4.01 -0.07 -32.90 16 13 N -0.45 -22.51 1.58 -643.00 -1.01 -23.52 16 14 C -0.34 -17.63 6.33 84.10 0.53 -17.09 16 15 H 0.08 4.35 7.13 -2.91 -0.02 4.33 16 16 C 0.04 2.08 4.93 84.96 0.42 2.50 16 17 N -0.88 -45.70 13.95 21.68 0.30 -45.40 16 18 Si 0.91 37.83 25.21 68.60 1.73 39.55 16 19 H -0.24 -9.19 6.74 99.48 0.67 -8.52 16 20 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 21 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 22 C 0.10 4.17 4.46 85.63 0.38 4.55 16 23 C 0.47 19.74 8.36 71.24 0.60 20.33 16 24 O -0.54 -26.31 16.98 21.98 0.37 -25.94 16 25 O -0.51 -15.47 13.42 -51.43 -0.69 -16.16 16 26 C -0.08 -2.98 9.25 22.54 0.21 -2.77 16 27 H 0.15 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.14 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.16 0.03 8.14 -2.39 -0.02 0.01 16 30 H 0.19 1.31 8.08 -2.39 -0.02 1.29 16 31 H 0.16 1.97 8.08 -2.39 -0.02 1.95 16 32 H 0.17 3.31 8.06 -2.91 -0.02 3.28 16 33 H 0.15 4.24 8.06 -2.91 -0.02 4.22 16 34 H 0.15 6.77 5.24 -2.91 -0.02 6.75 16 35 H 0.29 13.65 8.31 -92.71 -0.77 12.88 16 36 H 0.12 4.93 7.61 -2.38 -0.02 4.91 16 37 H 0.12 4.91 4.44 -2.39 -0.01 4.90 16 38 H 0.43 8.63 9.10 -74.06 -0.67 7.95 16 39 H 0.12 4.89 7.94 -2.91 -0.02 4.87 16 Total: -1.00 -87.21 351.89 0.92 -86.29 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: 0.41 Total: 29.03 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: 4.79 Total: 4.08 kcal Atomic # 7 Polarization: -68.21 SS G_CDS: -0.71 Total: -68.92 kcal Atomic # 8 Polarization: -132.17 SS G_CDS: -4.99 Total: -137.16 kcal Atomic # 14 Polarization: 37.83 SS G_CDS: 1.73 Total: 39.55 kcal Atomic # 16 Polarization: 47.42 SS G_CDS: -0.30 Total: 47.12 kcal Total: -87.21 0.92 -86.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607370939.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.496 kcal (2) G-P(sol) polarization free energy of solvation -87.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds