Wall clock time and date at job start Sat Apr 11 2020 06:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34727 * 117.00227 * 2 1 4 4 O 1.21472 * 119.99524 * 359.97438 * 3 2 1 5 5 C 1.47707 * 120.00087 * 180.02562 * 3 2 1 6 6 N 1.32894 * 119.79057 * 359.97438 * 5 3 2 7 7 C 1.31354 * 121.69780 * 179.97438 * 6 5 3 8 8 C 1.38804 * 121.06934 * 0.02562 * 7 6 5 9 9 C 1.38282 * 119.45551 * 0.02562 * 8 7 6 10 10 C 1.39365 * 118.44233 * 359.97438 * 9 8 7 11 11 O 1.35631 * 120.54548 * 180.02562 * 10 9 8 12 12 S 1.52205 * 114.00013 * 269.97949 * 11 10 9 13 13 O 1.42100 * 104.27706 * 191.06867 * 12 11 10 14 14 O 1.42098 * 104.27610 * 318.92537 * 12 11 10 15 15 C 1.81402 * 104.44650 * 74.99828 * 12 11 10 16 16 C 1.53010 * 109.46717 * 175.70968 * 15 12 11 17 17 C 1.50704 * 115.54573 * 65.40002 * 16 15 12 18 18 H 1.08002 * 119.99935 * 264.74266 * 17 16 15 19 19 C 1.37872 * 119.99910 * 84.75225 * 17 16 15 20 20 N 1.31520 * 120.00405 * 352.37390 * 19 17 16 21 21 Si 1.86808 * 120.00099 * 172.37492 * 19 17 16 22 22 H 1.48495 * 109.47043 * 59.99928 * 21 19 17 23 23 H 1.48500 * 109.46983 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46784 * 299.99838 * 21 19 17 25 25 C 1.53001 * 117.49681 * 279.73047 * 16 15 12 26 26 C 1.52994 * 117.49677 * 211.07052 * 16 15 12 27 27 H 1.09002 * 109.47057 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46996 * 299.99503 * 1 2 3 29 29 H 1.08994 * 109.47229 * 60.00088 * 1 2 3 30 30 H 1.08002 * 119.46559 * 179.72355 * 7 6 5 31 31 H 1.08000 * 120.26890 * 179.97438 * 8 7 6 32 32 H 1.07998 * 120.77959 * 180.02562 * 9 8 7 33 33 H 1.08992 * 109.47327 * 295.70621 * 15 12 11 34 34 H 1.08993 * 109.47019 * 55.71346 * 15 12 11 35 35 H 0.96993 * 120.00215 * 185.02930 * 20 19 17 36 36 H 1.08994 * 117.49894 * 0.02562 * 25 16 15 37 37 H 1.09003 * 117.49105 * 145.01934 * 25 16 15 38 38 H 1.09001 * 117.49507 * 214.97881 * 26 16 15 39 39 H 1.08993 * 117.50342 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2004 0.0000 4 8 1.4020 2.2191 -0.0005 5 6 3.5387 1.2777 -0.0006 6 7 4.2584 0.1605 -0.0006 7 6 5.5717 0.1855 -0.0016 8 6 6.2653 1.3878 -0.0021 9 6 5.5621 2.5785 -0.0011 10 6 4.1694 2.5268 -0.0001 11 8 3.4372 3.6686 0.0004 12 16 3.1037 4.1895 1.3911 13 8 2.1376 5.2061 1.1621 14 8 2.7773 3.0226 2.1334 15 6 4.6572 4.9106 1.9889 16 6 4.4230 5.5697 3.3498 17 6 4.0563 4.6322 4.4714 18 1 3.0183 4.4686 4.7208 19 6 5.0459 3.9837 5.1792 20 7 6.2976 4.0636 4.7834 21 14 4.6090 2.9915 6.7004 22 1 3.6639 1.9076 6.3299 23 1 5.8426 2.3970 7.2748 24 1 3.9730 3.8807 7.7055 25 6 3.7939 6.9643 3.3604 26 6 5.2764 6.7903 3.6997 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 6.1208 -0.7445 0.0030 31 1 7.3453 1.3933 -0.0025 32 1 6.0799 3.5262 -0.0019 33 1 5.4070 4.1260 2.0895 34 1 5.0074 5.6591 1.2783 35 1 6.9835 3.5493 5.2371 36 1 3.5465 7.4121 2.3980 37 1 3.1151 7.2039 4.1789 38 1 5.5723 6.9156 4.7413 39 1 6.0050 7.1237 2.9607 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001622001221.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:03 Heat of formation + Delta-G solvation = -110.569279 kcal Electronic energy + Delta-G solvation = -29174.576639 eV Core-core repulsion = 24984.354662 eV Total energy + Delta-G solvation = -4190.221977 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.086 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.61493 -39.85025 -38.95234 -36.84529 -36.46371 -36.29828 -35.26489 -32.89850 -32.10869 -31.15894 -28.42722 -27.88224 -25.57263 -25.04693 -24.19038 -21.66645 -21.28696 -20.74180 -19.46795 -18.47370 -18.02929 -17.55634 -17.19001 -16.89994 -16.29749 -16.18072 -15.69984 -15.30913 -14.80890 -14.57693 -14.17835 -13.98318 -13.92970 -13.58140 -13.22768 -13.17093 -13.02457 -12.52448 -12.13294 -12.07260 -12.03329 -11.88568 -11.39073 -11.31499 -11.11780 -10.95724 -10.78010 -10.72410 -10.68003 -10.52914 -10.24595 -10.12832 -9.92366 -9.76137 -9.33105 -9.04403 -8.62870 -8.19603 -6.21022 -4.31206 0.05844 0.58413 1.12705 2.36110 2.52744 2.64378 3.28654 3.29961 3.37805 3.48315 3.94073 4.25154 4.32371 4.33801 4.47063 4.56936 4.68229 4.87021 5.05593 5.07157 5.12128 5.14959 5.25419 5.37575 5.49149 5.59221 5.63896 5.75212 5.89616 6.13084 6.27324 6.28006 6.35515 6.49204 6.66800 6.89620 7.13283 7.32916 7.33022 7.74550 7.77028 8.12684 8.74784 9.40166 10.86740 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.011632 B = 0.005257 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.512457 B = 5324.647719 C = 5588.986569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.333 6.333 3 C 0.530 3.470 4 O -0.483 6.483 5 C 0.113 3.887 6 N -0.416 5.416 7 C 0.105 3.895 8 C -0.116 4.116 9 C -0.093 4.093 10 C 0.102 3.898 11 O -0.665 6.665 12 S 2.590 3.410 13 O -0.931 6.931 14 O -0.938 6.938 15 C -0.582 4.582 16 C 0.043 3.957 17 C -0.515 4.515 18 H 0.070 0.930 19 C 0.083 3.917 20 N -0.876 5.876 21 Si 0.890 3.110 22 H -0.269 1.269 23 H -0.285 1.285 24 H -0.272 1.272 25 C -0.210 4.210 26 C -0.137 4.137 27 H 0.104 0.896 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.178 0.822 31 H 0.160 0.840 32 H 0.165 0.835 33 H 0.135 0.865 34 H 0.105 0.895 35 H 0.264 0.736 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.494 -7.296 -11.678 13.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.248 6.248 3 C 0.372 3.628 4 O -0.368 6.368 5 C -0.025 4.025 6 N -0.128 5.128 7 C -0.057 4.057 8 C -0.136 4.136 9 C -0.120 4.120 10 C 0.056 3.944 11 O -0.621 6.621 12 S 2.689 3.311 13 O -0.929 6.929 14 O -0.936 6.936 15 C -0.713 4.713 16 C 0.041 3.959 17 C -0.552 4.552 18 H 0.088 0.912 19 C -0.122 4.122 20 N -0.511 5.511 21 Si 0.716 3.284 22 H -0.194 1.194 23 H -0.210 1.210 24 H -0.198 1.198 25 C -0.247 4.247 26 C -0.177 4.177 27 H 0.122 0.878 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.195 0.805 31 H 0.178 0.822 32 H 0.182 0.818 33 H 0.154 0.846 34 H 0.123 0.877 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.161 -7.878 -11.828 14.213 hybrid contribution 0.819 0.724 1.009 1.487 sum 0.980 -7.154 -10.820 13.008 Atomic orbital electron populations 1.23379 0.75907 1.03841 1.03018 1.86621 1.23367 1.31157 1.83695 1.20311 0.87272 0.82146 0.73078 1.90869 1.65550 1.36114 1.44316 1.20166 0.91942 0.88401 1.01969 1.67796 1.08581 1.27944 1.08509 1.23116 0.89168 0.98937 0.94450 1.22438 1.02712 0.91777 0.96658 1.21988 0.90902 1.01932 0.97183 1.18842 0.90086 0.82816 1.02621 1.85792 1.72932 1.43261 1.60127 1.05737 0.77961 0.75473 0.71898 1.93531 1.57015 1.60026 1.82334 1.93565 1.82871 1.46872 1.70337 1.30368 1.20290 1.12215 1.08424 1.18228 1.01401 0.86769 0.89522 1.20501 0.93619 1.26430 1.14664 0.91240 1.24935 0.94673 0.95385 0.97166 1.69958 1.00436 1.39799 1.40947 0.86662 0.78127 0.80672 0.82913 1.19421 1.21036 1.19769 1.23248 0.97129 1.02675 1.01650 1.22562 0.91119 1.03003 1.00967 0.87773 0.91280 0.91748 0.80471 0.82222 0.81773 0.84648 0.87653 0.92659 0.90502 0.89257 0.89380 0.91407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 101.05 1.07 1.46 16 2 O -0.33 -5.45 10.38 -40.57 -0.42 -5.87 16 3 C 0.53 10.23 7.22 34.60 0.25 10.48 16 4 O -0.48 -10.44 13.32 -29.36 -0.39 -10.83 16 5 C 0.11 2.05 6.19 -82.90 -0.51 1.53 16 6 N -0.42 -6.31 10.11 -9.72 -0.10 -6.40 16 7 C 0.10 1.14 11.18 -17.55 -0.20 0.94 16 8 C -0.12 -1.17 10.10 -39.36 -0.40 -1.57 16 9 C -0.09 -1.23 8.67 -39.15 -0.34 -1.57 16 10 C 0.10 1.80 4.81 -38.53 -0.19 1.61 16 11 O -0.67 -13.22 8.57 -54.04 -0.46 -13.68 16 12 S 2.59 59.11 4.18 -107.50 -0.45 58.66 16 13 O -0.93 -23.23 18.09 -67.04 -1.21 -24.44 16 14 O -0.94 -23.67 14.30 -69.88 -1.00 -24.67 16 15 C -0.58 -12.38 5.24 37.16 0.19 -12.19 16 16 C 0.04 1.05 1.32 -155.66 -0.21 0.84 16 17 C -0.52 -14.01 8.11 -34.44 -0.28 -14.29 16 18 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 19 C 0.08 2.23 5.38 -17.82 -0.10 2.14 16 20 N -0.88 -23.25 12.98 55.43 0.72 -22.53 16 21 Si 0.89 21.13 29.55 -169.99 -5.02 16.11 16 22 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 25 C -0.21 -4.63 9.96 -26.69 -0.27 -4.90 16 26 C -0.14 -3.07 9.49 -26.70 -0.25 -3.33 16 27 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.18 1.13 8.06 -52.49 -0.42 0.71 16 31 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 32 H 0.16 1.73 7.66 -52.49 -0.40 1.32 16 33 H 0.14 2.82 6.93 -51.93 -0.36 2.46 16 34 H 0.10 1.85 8.09 -51.93 -0.42 1.43 16 35 H 0.26 6.67 8.32 -40.82 -0.34 6.33 16 36 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 37 H 0.09 1.94 8.14 -51.93 -0.42 1.51 16 38 H 0.09 2.06 8.14 -51.93 -0.42 1.64 16 39 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 352.97 15.07 5.32 5.32 Total: -1.00 -35.91 352.97 -8.77 -44.68 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -4.53 Total: 2.49 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: -1.22 Total: -18.83 kcal Atomic # 7 Polarization: -29.56 SS G_CDS: 0.62 Total: -28.94 kcal Atomic # 8 Polarization: -76.01 SS G_CDS: -3.49 Total: -79.50 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 59.11 SS G_CDS: -0.45 Total: 58.66 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.91 -8.77 -44.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001622001221.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.887 kcal (2) G-P(sol) polarization free energy of solvation -35.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds