Wall clock time and date at job start Sat Apr 11 2020 06:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34774 * 119.99819 * 2 1 4 4 O 1.21622 * 119.99564 * 184.92708 * 3 2 1 5 5 C 1.47250 * 120.00141 * 4.92078 * 3 2 1 6 6 N 1.30553 * 125.54428 * 353.97073 * 5 3 2 7 7 C 1.30711 * 115.90813 * 179.78186 * 6 5 3 8 8 C 1.34233 * 115.78079 * 0.51063 * 7 6 5 9 9 S 1.71073 * 109.09231 * 359.73049 * 8 7 6 10 10 C 1.46495 * 119.99944 * 179.97438 * 2 1 3 11 11 C 1.53950 * 113.74081 * 42.40961 * 10 2 1 12 12 N 1.47814 * 86.03511 * 222.08353 * 11 10 2 13 13 C 1.34780 * 134.45471 * 204.64298 * 12 11 10 14 14 O 1.21283 * 119.99702 * 179.86709 * 13 12 11 15 15 C 1.50692 * 120.00164 * 359.87055 * 13 12 11 16 16 S 1.81000 * 109.47120 * 179.97438 * 15 13 12 17 17 C 1.76206 * 100.00105 * 179.97438 * 16 15 13 18 18 H 1.08000 * 119.99766 * 359.97438 * 17 16 15 19 19 C 1.38800 * 120.00099 * 180.02562 * 17 16 15 20 20 N 1.31635 * 119.99831 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00074 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46876 * 59.99916 * 21 19 17 23 23 H 1.48503 * 109.47230 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47117 * 300.00274 * 21 19 17 25 25 C 1.47578 * 91.05325 * 24.54848 * 12 11 10 26 26 H 1.09004 * 109.47358 * 184.97401 * 1 2 3 27 27 H 1.08994 * 109.47529 * 304.97724 * 1 2 3 28 28 H 1.09001 * 109.47174 * 64.97663 * 1 2 3 29 29 H 1.08003 * 122.10614 * 180.22277 * 7 6 5 30 30 H 1.08002 * 125.45056 * 179.72026 * 8 7 6 31 31 H 1.09001 * 112.94796 * 173.99709 * 10 2 1 32 32 H 1.08997 * 113.76968 * 336.34881 * 11 10 2 33 33 H 1.08998 * 113.76887 * 107.74984 * 11 10 2 34 34 H 1.08999 * 109.47161 * 299.99764 * 15 13 12 35 35 H 1.08999 * 109.47189 * 59.99827 * 15 13 12 36 36 H 0.96993 * 119.99894 * 180.02562 * 20 19 17 37 37 H 1.08995 * 113.77132 * 221.15480 * 25 12 11 38 38 H 1.08999 * 113.76753 * 89.75213 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1691 -0.0905 5 6 1.4066 2.4401 0.1094 6 7 0.1078 2.5717 0.0999 7 6 -0.3433 3.7933 0.2137 8 6 0.5897 4.7531 0.3146 9 16 2.1408 4.0330 0.2667 10 6 2.1975 -1.2687 0.0006 11 6 1.6063 -2.3261 -0.9494 12 7 1.8509 -3.2936 0.1410 13 6 2.0467 -4.6261 0.1944 14 8 2.2310 -5.1695 1.2628 15 6 2.0367 -5.4405 -1.0734 16 16 2.3262 -7.1820 -0.6741 17 6 2.2640 -7.8810 -2.2904 18 1 2.0868 -7.2469 -3.1465 19 6 2.4417 -9.2467 -2.4633 20 7 2.6562 -10.0198 -1.4196 21 14 2.3751 -9.9878 -4.1766 22 1 3.4339 -9.3785 -5.0209 23 1 2.5926 -11.4543 -4.0905 24 1 1.0451 -9.7198 -4.7805 25 6 1.7971 -2.2151 1.1469 26 1 -0.3634 -1.0238 0.0891 27 1 -0.3634 0.5891 0.8420 28 1 -0.3633 0.4347 -0.9312 29 1 -1.3999 4.0166 0.2211 30 1 0.3926 5.8106 0.4105 31 1 3.2745 -1.1377 -0.1045 32 1 0.5504 -2.1742 -1.1733 33 1 2.2099 -2.5037 -1.8394 34 1 1.0693 -5.3360 -1.5648 35 1 2.8228 -5.0853 -1.7397 36 1 2.7808 -10.9740 -1.5404 37 1 2.5528 -2.3041 1.9273 38 1 0.7974 -2.0305 1.5400 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001747982109.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:18 Heat of formation + Delta-G solvation = 12.888801 kcal Electronic energy + Delta-G solvation = -23654.517354 eV Core-core repulsion = 19944.694543 eV Total energy + Delta-G solvation = -3709.822811 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.99239 -40.93789 -39.98437 -38.84044 -35.98269 -34.59082 -32.20108 -31.39147 -29.21553 -28.16671 -27.70291 -27.29030 -26.95538 -23.83595 -21.98628 -20.66414 -20.29057 -19.55602 -19.15344 -18.22431 -18.11616 -17.49219 -17.23219 -16.88419 -16.62868 -16.47833 -15.92464 -15.75826 -15.18406 -15.04226 -14.73889 -14.42746 -14.26854 -14.01682 -13.90010 -13.80599 -13.66672 -13.24029 -13.16964 -13.00152 -12.86360 -12.62892 -12.41119 -12.37296 -11.76577 -11.66559 -11.13250 -11.03943 -10.76026 -10.67352 -10.30768 -10.06180 -9.85130 -9.75827 -8.69149 -8.34916 -6.14061 -0.80382 0.09648 0.74401 1.14621 1.26953 1.39744 1.44146 1.48044 1.52734 1.72379 2.05716 2.09839 2.26899 2.93741 2.99081 3.12899 3.26288 3.47451 3.80014 3.84363 4.01729 4.20174 4.26411 4.31783 4.32081 4.42208 4.42922 4.49329 4.53840 4.75856 4.77244 4.83195 5.03595 5.17589 5.35571 5.41019 6.03272 6.19178 6.42930 6.45655 6.82036 7.02941 7.05934 8.74124 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.029879 B = 0.001880 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.890762 B =14886.540706 C =15146.518924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.577 5.577 3 C 0.597 3.403 4 O -0.562 6.562 5 C -0.058 4.058 6 N -0.419 5.419 7 C 0.009 3.991 8 C -0.253 4.253 9 S 0.254 5.746 10 C 0.121 3.879 11 C 0.097 3.903 12 N -0.645 5.645 13 C 0.560 3.440 14 O -0.565 6.565 15 C -0.119 4.119 16 S -0.151 6.151 17 C -0.547 4.547 18 H 0.084 0.916 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 1.000 3.000 22 H -0.262 1.262 23 H -0.279 1.279 24 H -0.261 1.261 25 C 0.097 3.903 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.206 0.794 30 H 0.218 0.782 31 H 0.125 0.875 32 H 0.120 0.880 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.271 0.729 37 H 0.080 0.920 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.437 35.725 0.301 36.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.309 5.309 3 C 0.383 3.617 4 O -0.440 6.440 5 C -0.331 4.331 6 N -0.139 5.139 7 C -0.147 4.147 8 C -0.394 4.394 9 S 0.507 5.493 10 C 0.016 3.984 11 C -0.026 4.026 12 N -0.382 5.382 13 C 0.349 3.651 14 O -0.443 6.443 15 C -0.270 4.270 16 S 0.077 5.923 17 C -0.694 4.694 18 H 0.102 0.898 19 C -0.192 4.192 20 N -0.547 5.547 21 Si 0.821 3.179 22 H -0.187 1.187 23 H -0.204 1.204 24 H -0.185 1.185 25 C -0.026 4.026 26 H 0.105 0.895 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.222 0.778 30 H 0.234 0.766 31 H 0.143 0.857 32 H 0.138 0.862 33 H 0.122 0.878 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.746 34.409 1.896 35.115 hybrid contribution -1.109 -0.014 -1.720 2.047 sum -7.855 34.394 0.176 35.280 Atomic orbital electron populations 1.22166 0.75854 1.03462 1.04285 1.47551 1.08852 1.03708 1.70744 1.17051 0.85751 0.82620 0.76310 1.90857 1.14092 1.87147 1.51926 1.27266 0.93184 0.98669 1.13936 1.67113 1.10097 1.25094 1.11561 1.22288 1.03687 0.85377 1.03334 1.27400 0.96453 1.08102 1.07432 1.84238 1.07255 0.97310 1.60466 1.23048 0.98725 0.80871 0.95742 1.23974 1.03676 0.82456 0.92451 1.49666 1.71615 1.04101 1.12857 1.19706 0.75098 0.80439 0.89830 1.90701 1.50512 1.70514 1.32578 1.23275 1.06523 0.98761 0.98463 1.85601 1.94360 0.98130 1.14254 1.23157 1.57235 0.96194 0.92840 0.89835 1.26152 0.93693 0.96441 1.02903 1.70179 1.46429 1.05839 1.32281 0.84988 0.79501 0.76886 0.76520 1.18679 1.20384 1.18526 1.23754 1.03451 0.81620 0.93759 0.89487 0.89950 0.90480 0.77751 0.76550 0.85688 0.86221 0.87839 0.87228 0.87529 0.91957 0.90196 0.87312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.95 7.99 127.77 1.02 1.97 16 2 N -0.58 -9.61 3.10 -832.41 -2.58 -12.19 16 3 C 0.60 12.21 7.66 86.61 0.66 12.87 16 4 O -0.56 -15.02 16.41 -4.10 -0.07 -15.09 16 5 C -0.06 -0.94 7.23 87.25 0.63 -0.31 16 6 N -0.42 -5.43 7.15 -190.31 -1.36 -6.79 16 7 C 0.01 0.07 11.24 83.94 0.94 1.02 16 8 C -0.25 -1.38 11.09 66.91 0.74 -0.64 16 9 S 0.25 2.84 23.04 -56.49 -1.30 1.54 16 10 C 0.12 2.26 4.42 46.75 0.21 2.47 16 11 C 0.10 1.73 8.02 86.44 0.69 2.42 16 12 N -0.65 -17.62 3.61 -836.50 -3.02 -20.64 16 13 C 0.56 21.85 8.07 87.65 0.71 22.56 16 14 O -0.56 -27.54 16.59 -3.04 -0.05 -27.59 16 15 C -0.12 -4.88 5.91 71.23 0.42 -4.46 16 16 S -0.15 -8.51 20.57 -56.49 -1.16 -9.67 16 17 C -0.55 -31.42 9.50 67.95 0.65 -30.78 16 18 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 19 C 0.01 0.74 5.49 84.86 0.47 1.20 16 20 N -0.91 -56.34 13.22 21.65 0.29 -56.06 16 21 Si 1.00 43.71 29.55 68.60 2.03 45.74 16 22 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 23 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 24 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 25 C 0.10 2.09 8.30 86.49 0.72 2.81 16 26 H 0.09 0.79 5.72 -2.38 -0.01 0.78 16 27 H 0.08 0.96 6.75 -2.39 -0.02 0.94 16 28 H 0.08 0.83 7.71 -2.39 -0.02 0.81 16 29 H 0.21 0.35 8.06 -2.91 -0.02 0.33 16 30 H 0.22 -0.34 8.06 -2.91 -0.02 -0.37 16 31 H 0.13 2.73 7.18 -2.39 -0.02 2.71 16 32 H 0.12 1.53 6.48 -2.39 -0.02 1.51 16 33 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.11 4.01 8.14 -2.40 -0.02 4.00 16 35 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 36 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 37 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.11 1.88 7.05 -2.39 -0.02 1.87 16 Total: -1.00 -83.41 355.18 1.74 -81.67 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: 1.10 Total: 7.94 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 7.86 Total: 11.14 kcal Atomic # 7 Polarization: -89.00 SS G_CDS: -6.67 Total: -95.68 kcal Atomic # 8 Polarization: -42.56 SS G_CDS: -0.12 Total: -42.68 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: -5.67 SS G_CDS: -2.46 Total: -8.13 kcal Total: -83.41 1.74 -81.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001747982109.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.560 kcal (2) G-P(sol) polarization free energy of solvation -83.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds