Wall clock time and date at job start Sat Apr 11 2020 06:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 113.99763 * 2 1 4 4 C 1.53003 * 109.47020 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47237 * 64.99862 * 4 3 2 6 6 C 1.46497 * 120.00117 * 274.99748 * 5 4 3 7 7 C 1.50691 * 109.47560 * 275.00314 * 6 5 4 8 8 H 1.08004 * 120.00216 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00291 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99935 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00205 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47287 * 59.99668 * 11 9 7 13 13 H 1.48497 * 109.47387 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47099 * 300.00173 * 11 9 7 15 15 S 1.65608 * 119.99720 * 95.00138 * 5 4 3 16 16 O 1.42104 * 106.39724 * 203.53944 * 15 5 4 17 17 O 1.42097 * 106.40199 * 336.45856 * 15 5 4 18 18 C 1.76195 * 107.21632 * 90.00113 * 15 5 4 19 19 C 1.35605 * 120.30658 * 114.99979 * 18 15 5 20 20 C 1.40068 * 121.94833 * 179.97438 * 19 18 15 21 21 C 1.35600 * 121.94126 * 0.02562 * 20 19 18 22 22 C 1.40841 * 119.38949 * 0.02562 * 21 20 19 23 23 N 1.31021 * 138.56048 * 180.02562 * 22 21 20 24 24 O 1.21476 * 109.08435 * 179.33738 * 23 22 21 25 25 N 1.21470 * 116.28593 * 0.62251 * 24 23 22 26 26 C 1.31021 * 109.08595 * 359.46769 * 25 24 23 27 27 H 1.09002 * 109.47291 * 299.99340 * 1 2 3 28 28 H 1.08997 * 109.47271 * 59.99720 * 1 2 3 29 29 H 1.08999 * 109.46926 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47339 * 60.00756 * 3 2 1 31 31 H 1.08997 * 109.47165 * 299.99950 * 3 2 1 32 32 H 1.09000 * 109.47100 * 304.99871 * 4 3 2 33 33 H 1.09001 * 109.47322 * 185.00124 * 4 3 2 34 34 H 1.09006 * 109.46804 * 35.00653 * 6 5 4 35 35 H 1.09009 * 109.46839 * 155.00083 * 6 5 4 36 36 H 0.97000 * 120.00073 * 179.97438 * 10 9 7 37 37 H 1.08003 * 119.02345 * 0.02562 * 19 18 15 38 38 H 1.07995 * 119.02964 * 180.02562 * 20 19 18 39 39 H 1.07999 * 120.30598 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.0004 -0.8949 -1.3781 7 6 5.2993 -1.4245 -0.8275 8 1 6.0333 -0.7422 -0.4247 9 6 5.5513 -2.7800 -0.8387 10 7 4.6578 -3.6109 -1.3296 11 14 7.1617 -3.4364 -0.1568 12 1 7.2828 -3.0609 1.2749 13 1 7.1873 -4.9156 -0.2849 14 1 8.2958 -2.8543 -0.9187 15 16 4.4453 1.5131 -2.5263 16 8 4.2757 0.7258 -3.6970 17 8 3.8177 2.7743 -2.3401 18 6 6.1774 1.7899 -2.3595 19 6 7.0407 1.3004 -3.2836 20 6 8.4236 1.5003 -3.1852 21 6 8.9770 2.1942 -2.1600 22 6 8.1436 2.7324 -1.1603 23 7 8.2576 3.4307 -0.0575 24 8 7.1516 3.6236 0.4065 25 7 6.2195 3.1446 -0.2077 26 6 6.6778 2.5250 -1.2672 27 1 -0.3634 0.5137 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6886 1.8463 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.8514 0.5683 0.8409 33 1 3.9785 2.1766 0.0889 34 1 3.1678 -1.3218 -0.8190 35 1 3.9119 -1.1708 -2.4290 36 1 4.8353 -4.5645 -1.3379 37 1 6.6504 0.7406 -4.1206 38 1 9.0680 1.0898 -3.9483 39 1 10.0469 2.3320 -2.1100 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120335815.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:09 Heat of formation + Delta-G solvation = 34.222654 kcal Electronic energy + Delta-G solvation = -29030.233885 eV Core-core repulsion = 24878.583308 eV Total energy + Delta-G solvation = -4151.650577 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.092 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.63180 -38.79498 -37.72390 -36.79532 -35.44683 -35.35962 -34.81251 -33.23982 -32.59607 -31.45634 -29.49691 -26.78634 -25.94731 -25.63493 -24.93816 -22.86070 -22.04504 -21.71782 -19.42564 -18.91163 -18.36902 -17.97950 -17.09339 -16.92174 -16.35817 -15.97502 -15.66470 -15.56200 -15.21034 -14.75282 -14.45796 -14.36583 -13.57326 -13.19862 -13.14236 -12.90113 -12.67715 -12.37399 -12.22364 -12.05909 -11.95432 -11.86705 -11.72222 -11.71513 -11.59570 -11.26177 -11.09806 -10.91495 -10.73921 -10.54969 -10.37142 -10.08757 -9.92827 -9.80044 -9.25158 -8.97285 -8.46605 -8.07080 -6.09193 -4.15141 -0.29273 0.86591 1.09005 1.73943 2.98176 3.07893 3.23401 3.29878 3.30587 3.38583 3.47520 3.83577 4.10935 4.22133 4.36409 4.50535 4.58262 4.68567 5.03122 5.14847 5.24871 5.30893 5.41823 5.46509 5.57929 5.61934 5.71044 5.73998 5.79546 5.83623 5.85487 5.97426 6.25810 6.35014 6.52798 7.41341 7.46826 7.57472 7.73574 7.88799 8.18072 8.42976 8.88373 9.49563 10.98598 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.008664 B = 0.006684 C = 0.004847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3231.173750 B = 4187.994012 C = 5775.374680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.370 6.370 3 C 0.045 3.955 4 C 0.130 3.870 5 N -0.965 5.965 6 C 0.243 3.757 7 C -0.541 4.541 8 H 0.055 0.945 9 C 0.068 3.932 10 N -0.885 5.885 11 Si 0.888 3.112 12 H -0.277 1.277 13 H -0.285 1.285 14 H -0.278 1.278 15 S 2.683 3.317 16 O -0.949 6.949 17 O -0.964 6.964 18 C -0.618 4.618 19 C 0.047 3.953 20 C -0.105 4.105 21 C -0.024 4.024 22 C 0.004 3.996 23 N -0.342 5.342 24 O 0.380 5.620 25 N -0.341 5.341 26 C 0.083 3.917 27 H 0.034 0.966 28 H 0.036 0.964 29 H 0.083 0.917 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.050 0.950 36 H 0.265 0.735 37 H 0.165 0.835 38 H 0.154 0.846 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.013 11.019 -1.104 11.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.288 6.288 3 C -0.034 4.034 4 C 0.003 3.997 5 N -0.805 5.805 6 C 0.122 3.878 7 C -0.581 4.581 8 H 0.073 0.927 9 C -0.135 4.135 10 N -0.523 5.523 11 Si 0.716 3.284 12 H -0.203 1.203 13 H -0.210 1.210 14 H -0.203 1.203 15 S 2.769 3.231 16 O -0.939 6.939 17 O -0.954 6.954 18 C -0.702 4.702 19 C 0.024 3.976 20 C -0.128 4.128 21 C -0.044 4.044 22 C -0.149 4.149 23 N -0.062 5.062 24 O 0.141 5.859 25 N -0.063 5.063 26 C -0.071 4.071 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.102 0.898 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.183 0.817 38 H 0.172 0.828 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.454 11.560 -0.794 11.844 hybrid contribution 1.689 -0.860 0.122 1.899 sum 4.143 10.700 -0.673 11.493 Atomic orbital electron populations 1.22705 0.82318 1.02452 0.99161 1.88095 1.18492 1.27072 1.95177 1.23077 0.95003 0.85170 1.00124 1.21255 0.91618 0.98478 0.88317 1.57295 1.76888 1.19235 1.27102 1.19406 0.98305 0.70851 0.99258 1.21484 1.02798 0.92207 1.41576 0.92711 1.24879 0.96651 0.96786 0.95183 1.69922 1.34247 1.03263 1.44865 0.86729 0.84045 0.77999 0.79653 1.20273 1.21017 1.20336 1.02421 0.73307 0.73163 0.74211 1.93566 1.84612 1.69808 1.45903 1.93553 1.72966 1.42506 1.86403 1.30322 1.29565 1.10212 1.00125 1.21132 0.92854 0.88162 0.95472 1.21205 0.95293 0.97741 0.98585 1.20176 0.99524 0.94523 0.90183 1.22856 0.94943 1.01370 0.95710 1.75164 1.04683 1.16294 1.10037 1.85357 1.06783 1.51933 1.41820 1.75265 1.12014 1.12520 1.06512 1.21699 0.91488 0.99205 0.94729 0.94759 0.94569 0.89834 0.92835 0.93117 0.89062 0.89265 0.91746 0.93192 0.92554 0.81731 0.82800 0.83185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.86 9.02 -35.23 -0.32 -7.17 16 3 C 0.04 0.76 6.28 37.16 0.23 0.99 16 4 C 0.13 2.41 5.79 -4.04 -0.02 2.38 16 5 N -0.97 -20.38 2.76 -115.66 -0.32 -20.70 16 6 C 0.24 6.05 5.27 -5.20 -0.03 6.02 16 7 C -0.54 -14.27 9.38 -34.44 -0.32 -14.59 16 8 H 0.05 1.42 7.81 -52.48 -0.41 1.01 16 9 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 10 N -0.89 -25.15 13.29 55.43 0.74 -24.41 16 11 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 15 S 2.68 53.62 5.61 -107.50 -0.60 53.01 16 16 O -0.95 -20.57 15.48 -57.17 -0.89 -21.45 16 17 O -0.96 -19.64 16.92 -57.17 -0.97 -20.61 16 18 C -0.62 -10.95 5.91 -39.54 -0.23 -11.18 16 19 C 0.05 0.69 9.45 -39.84 -0.38 0.31 16 20 C -0.11 -1.20 9.90 -39.84 -0.39 -1.59 16 21 C -0.02 -0.28 10.08 -39.54 -0.40 -0.68 16 22 C 0.00 0.07 7.76 -83.03 -0.64 -0.58 16 23 N -0.34 -5.14 12.29 31.88 0.39 -4.74 16 24 O 0.38 5.77 11.67 26.94 0.31 6.08 16 25 N -0.34 -5.79 11.07 31.88 0.35 -5.44 16 26 C 0.08 1.45 7.43 -83.03 -0.62 0.83 16 27 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.09 1.73 8.11 -51.93 -0.42 1.31 16 33 H 0.09 1.53 6.36 -51.93 -0.33 1.20 16 34 H 0.06 1.71 6.60 -51.93 -0.34 1.37 16 35 H 0.05 1.34 6.91 -51.92 -0.36 0.98 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.17 2.19 7.24 -52.48 -0.38 1.81 16 38 H 0.15 1.10 8.06 -52.49 -0.42 0.67 16 39 H 0.15 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 350.85 15.07 5.29 5.29 Total: -1.00 -32.82 350.85 -7.16 -39.98 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -4.34 Total: -0.85 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -1.79 Total: -14.79 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 1.16 Total: -55.29 kcal Atomic # 8 Polarization: -41.30 SS G_CDS: -1.86 Total: -43.15 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 53.62 SS G_CDS: -0.60 Total: 53.01 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.82 -7.16 -39.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120335815.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.198 kcal (2) G-P(sol) polarization free energy of solvation -32.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds