Wall clock time and date at job start Sat Apr 11 2020 06:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34233 * 117.00040 * 2 1 4 4 O 1.20823 * 120.00146 * 0.02562 * 3 2 1 5 5 C 1.50695 * 119.99800 * 180.02562 * 3 2 1 6 6 N 1.46506 * 109.47248 * 180.02562 * 5 3 2 7 7 C 1.37105 * 119.99193 * 269.99724 * 6 5 3 8 8 H 1.07996 * 119.99430 * 202.98838 * 7 6 5 9 9 C 1.38949 * 119.99882 * 22.99834 * 7 6 5 10 10 N 1.31408 * 120.00587 * 351.25034 * 9 7 6 11 11 Si 1.86801 * 119.99549 * 171.25771 * 9 7 6 12 12 H 1.48496 * 109.47484 * 89.99666 * 11 9 7 13 13 H 1.48500 * 109.47022 * 209.99632 * 11 9 7 14 14 H 1.48506 * 109.47079 * 329.98980 * 11 9 7 15 15 C 1.34767 * 120.00270 * 89.99351 * 6 5 3 16 16 O 1.21291 * 120.00325 * 5.02245 * 15 6 5 17 17 C 1.50701 * 119.99898 * 185.02012 * 15 6 5 18 18 C 1.52994 * 109.47481 * 174.79874 * 17 15 6 19 19 O 1.42901 * 109.47382 * 179.97438 * 18 17 15 20 20 C 1.35929 * 116.99905 * 179.97438 * 19 18 17 21 21 C 1.38724 * 120.04087 * 0.27507 * 20 19 18 22 22 C 1.38152 * 119.95305 * 180.23000 * 21 20 19 23 23 C 1.38369 * 120.04101 * 359.49795 * 22 21 20 24 24 Cl 1.73594 * 119.95593 * 180.27415 * 23 22 21 25 25 C 1.38368 * 120.08505 * 0.25057 * 23 22 21 26 26 C 1.38137 * 120.04405 * 0.02562 * 25 23 22 27 27 H 1.09006 * 109.46844 * 300.00088 * 1 2 3 28 28 H 1.09003 * 109.47073 * 59.99447 * 1 2 3 29 29 H 1.08994 * 109.47157 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47526 * 60.00054 * 5 3 2 31 31 H 1.09009 * 109.47017 * 299.99413 * 5 3 2 32 32 H 0.96996 * 120.00191 * 185.01926 * 10 9 7 33 33 H 1.09001 * 109.46964 * 54.79922 * 17 15 6 34 34 H 1.09007 * 109.47333 * 294.80248 * 17 15 6 35 35 H 1.09001 * 109.46982 * 60.00060 * 18 17 15 36 36 H 1.09007 * 109.47142 * 300.00491 * 18 17 15 37 37 H 1.08001 * 120.02509 * 359.97438 * 21 20 19 38 38 H 1.07990 * 119.97629 * 179.77172 * 22 21 20 39 39 H 1.07997 * 119.97396 * 180.02562 * 25 23 22 40 40 H 1.07996 * 120.02195 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9818 2.6797 0.0002 7 6 4.1757 3.3377 -1.1870 8 1 4.8141 4.2081 -1.2238 9 6 3.5509 2.8848 -2.3424 10 7 2.9158 1.7344 -2.3383 11 14 3.6138 3.9113 -3.9018 12 1 4.8090 3.5313 -4.6968 13 1 2.3880 3.6684 -4.7041 14 1 3.6940 5.3505 -3.5442 15 6 4.1733 3.3252 1.1676 16 8 4.0909 2.7204 2.2157 17 6 4.4899 4.7986 1.1708 18 6 4.5308 5.3084 2.6127 19 8 4.8316 6.7054 2.6158 20 6 4.9052 7.3181 3.8269 21 6 4.6978 6.5882 4.9882 22 6 4.7682 7.2138 6.2180 23 6 5.0558 8.5653 6.2922 24 17 5.1508 9.3476 7.8389 25 6 5.2681 9.2938 5.1351 26 6 5.1928 8.6730 3.9034 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.9557 0.7809 -0.8907 31 1 3.9564 0.7806 0.8893 32 1 2.5423 1.3836 -3.1619 33 1 3.7207 5.3367 0.6169 34 1 5.4591 4.9630 0.6996 35 1 5.3000 4.7703 3.1667 36 1 3.5617 5.1439 3.0839 37 1 4.4772 5.5325 4.9309 38 1 4.6032 6.6467 7.1220 39 1 5.4928 10.3484 5.1952 40 1 5.3590 9.2419 3.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120725195.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:18 Heat of formation + Delta-G solvation = -128.594938 kcal Electronic energy + Delta-G solvation = -26813.197268 eV Core-core repulsion = 22620.149933 eV Total energy + Delta-G solvation = -4193.047335 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.20943 -39.52221 -38.48441 -37.66022 -36.28639 -35.55816 -34.66003 -31.85426 -31.63951 -31.15359 -29.46470 -28.40178 -26.38484 -25.11170 -23.92549 -22.70018 -21.74021 -20.21996 -19.33409 -18.44919 -17.05104 -16.77362 -16.58232 -16.16160 -16.05315 -15.85487 -15.48692 -15.20776 -14.72165 -14.41996 -14.20385 -14.08427 -13.68520 -13.47574 -13.36572 -12.78148 -12.65527 -12.52292 -12.29337 -11.99879 -11.73789 -11.56421 -11.37069 -11.27661 -11.20224 -11.11497 -10.91270 -10.74986 -10.58317 -10.48287 -10.34846 -9.87535 -9.61533 -9.26189 -9.08553 -8.79717 -8.18752 -8.07723 -6.54832 -4.18802 1.09167 1.12149 2.03639 3.01321 3.08763 3.14818 3.17787 3.42709 3.50522 3.66834 3.90813 4.02502 4.60522 4.63634 4.73365 4.92114 5.01358 5.17055 5.33881 5.36030 5.39548 5.66287 5.67644 5.73707 5.75415 5.84571 5.91116 6.03385 6.10095 6.15146 6.21019 6.24379 6.39338 6.45554 6.50315 6.82008 7.22034 7.39543 7.41034 7.53940 8.12770 8.85821 9.05500 9.21036 9.60129 10.46417 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.015726 B = 0.002402 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.023748 B =11654.728097 C =12922.717155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.372 6.372 3 C 0.491 3.509 4 O -0.515 6.515 5 C 0.153 3.847 6 N -0.427 5.427 7 C -0.330 4.330 8 H 0.105 0.895 9 C 0.044 3.956 10 N -0.883 5.883 11 Si 0.934 3.066 12 H -0.276 1.276 13 H -0.282 1.282 14 H -0.267 1.267 15 C 0.474 3.526 16 O -0.607 6.607 17 C -0.117 4.117 18 C 0.076 3.924 19 O -0.312 6.312 20 C 0.148 3.852 21 C -0.198 4.198 22 C -0.068 4.068 23 C -0.081 4.081 24 Cl -0.080 7.080 25 C -0.072 4.072 26 C -0.146 4.146 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.086 0.914 30 H 0.140 0.860 31 H 0.078 0.922 32 H 0.275 0.725 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.143 0.857 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.789 7.147 8.984 11.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.290 6.290 3 C 0.333 3.667 4 O -0.401 6.401 5 C 0.028 3.972 6 N -0.146 5.146 7 C -0.457 4.457 8 H 0.123 0.877 9 C -0.160 4.160 10 N -0.522 5.522 11 Si 0.760 3.240 12 H -0.202 1.202 13 H -0.207 1.207 14 H -0.192 1.192 15 C 0.264 3.736 16 O -0.494 6.494 17 C -0.157 4.157 18 C 0.001 3.999 19 O -0.225 6.225 20 C 0.101 3.899 21 C -0.217 4.217 22 C -0.087 4.087 23 C -0.108 4.108 24 Cl -0.052 7.052 25 C -0.091 4.091 26 C -0.165 4.165 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.104 0.896 30 H 0.157 0.843 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.110 0.890 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.160 0.840 38 H 0.152 0.848 39 H 0.155 0.845 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.386 7.194 9.263 11.968 hybrid contribution -0.468 0.357 -0.828 1.015 sum 1.918 7.551 8.435 11.482 Atomic orbital electron populations 1.22928 0.78853 1.01825 1.01503 1.86464 1.21501 1.35423 1.85587 1.23930 0.92319 0.80441 0.69993 1.90503 1.66742 1.36477 1.46394 1.20673 0.87007 0.85358 1.04195 1.43286 1.57490 1.08506 1.05281 1.19707 1.27879 1.13146 0.84985 0.87748 1.25321 0.94028 0.96264 1.00352 1.69596 1.36040 1.17851 1.28735 0.85807 0.77810 0.80096 0.80270 1.20208 1.20741 1.19163 1.19816 0.82085 0.88196 0.83543 1.90550 1.58549 1.68732 1.31523 1.21202 1.04777 0.94821 0.94869 1.22643 1.01437 0.76864 0.98990 1.86048 1.84667 1.25575 1.26228 1.19143 0.93680 0.92280 0.84792 1.21405 1.07181 1.01506 0.91563 1.20844 0.97220 0.92457 0.98149 1.20738 1.09947 0.93594 0.86494 1.98348 1.97124 1.80913 1.28794 1.20802 0.98230 1.00028 0.90015 1.20403 1.05692 0.92166 0.98209 0.93213 0.92772 0.89565 0.84286 0.90370 0.91426 0.88247 0.88956 0.91113 0.91294 0.83961 0.84802 0.84519 0.84215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 10.56 101.05 1.07 1.81 16 2 O -0.37 -7.93 10.57 -39.27 -0.41 -8.35 16 3 C 0.49 11.92 5.92 36.00 0.21 12.13 16 4 O -0.52 -13.93 15.94 -18.75 -0.30 -14.23 16 5 C 0.15 3.58 5.29 -5.19 -0.03 3.55 16 6 N -0.43 -10.28 2.11 -116.10 -0.25 -10.53 16 7 C -0.33 -7.88 9.00 -14.93 -0.13 -8.01 16 8 H 0.10 2.30 6.72 -52.49 -0.35 1.95 16 9 C 0.04 1.06 5.41 -17.47 -0.09 0.96 16 10 N -0.88 -21.86 8.21 55.50 0.46 -21.40 16 11 Si 0.93 18.99 29.56 -169.99 -5.03 13.97 16 12 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 13 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 14 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 15 C 0.47 10.83 7.62 -10.99 -0.08 10.75 16 16 O -0.61 -14.83 15.54 5.55 0.09 -14.75 16 17 C -0.12 -2.19 4.62 -27.89 -0.13 -2.31 16 18 C 0.08 1.25 4.05 37.15 0.15 1.40 16 19 O -0.31 -4.84 10.14 -19.52 -0.20 -5.03 16 20 C 0.15 2.03 6.69 -39.22 -0.26 1.76 16 21 C -0.20 -2.53 9.04 -39.43 -0.36 -2.89 16 22 C -0.07 -0.78 9.82 -39.56 -0.39 -1.16 16 23 C -0.08 -0.90 6.32 -39.49 -0.25 -1.15 16 24 Cl -0.08 -0.81 28.95 -51.86 -1.50 -2.31 16 25 C -0.07 -0.76 9.82 -39.57 -0.39 -1.14 16 26 C -0.15 -1.70 9.99 -39.44 -0.39 -2.10 16 27 H 0.05 0.83 8.13 -51.93 -0.42 0.41 16 28 H 0.05 0.96 8.13 -51.93 -0.42 0.54 16 29 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.14 3.27 6.28 -51.93 -0.33 2.94 16 31 H 0.08 1.74 7.36 -51.92 -0.38 1.35 16 32 H 0.27 6.56 8.32 -40.82 -0.34 6.22 16 33 H 0.10 1.90 8.03 -51.93 -0.42 1.49 16 34 H 0.09 1.58 7.74 -51.93 -0.40 1.18 16 35 H 0.07 1.14 7.55 -51.93 -0.39 0.75 16 36 H 0.07 1.17 7.67 -51.93 -0.40 0.77 16 37 H 0.14 1.80 6.30 -52.49 -0.33 1.47 16 38 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 39 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 361.03 15.07 5.44 5.44 Total: -1.00 -29.35 361.03 -7.45 -36.81 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -4.67 Total: 6.78 kcal Atomic # 6 Polarization: 14.68 SS G_CDS: -1.08 Total: 13.61 kcal Atomic # 7 Polarization: -32.14 SS G_CDS: 0.21 Total: -31.93 kcal Atomic # 8 Polarization: -41.53 SS G_CDS: -0.83 Total: -42.35 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.97 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.50 Total: -2.31 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.35 -7.45 -36.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120725195.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.788 kcal (2) G-P(sol) polarization free energy of solvation -29.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds