Wall clock time and date at job start Sat Apr 11 2020 06:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34884 * 120.00547 * 2 1 4 4 C 1.46347 * 119.99705 * 5.60182 * 3 2 1 5 5 O 1.21705 * 120.00121 * 354.75302 * 4 3 2 6 6 N 1.34776 * 119.99849 * 174.74722 * 4 3 2 7 7 S 1.65593 * 120.00174 * 179.72501 * 6 4 3 8 8 O 1.42097 * 104.27954 * 181.34797 * 7 6 4 9 9 O 1.42099 * 104.27908 * 309.20866 * 7 6 4 10 10 C 1.81400 * 104.44932 * 65.27591 * 7 6 4 11 11 C 1.53001 * 109.47413 * 179.97438 * 10 7 6 12 12 C 1.50697 * 109.47210 * 180.02562 * 11 10 7 13 13 H 1.08008 * 119.99925 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99993 * 180.02562 * 12 11 10 15 15 N 1.31511 * 119.99846 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99956 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47052 * 89.99939 * 16 14 12 18 18 H 1.48497 * 109.47182 * 209.99626 * 16 14 12 19 19 H 1.48498 * 109.47191 * 329.99912 * 16 14 12 20 20 C 1.47112 * 119.99332 * 179.97438 * 2 1 3 21 21 C 1.39895 * 120.14290 * 114.72729 * 20 2 1 22 22 C 1.37783 * 119.85368 * 179.78745 * 21 20 2 23 23 C 1.38683 * 120.14328 * 0.48787 * 22 21 20 24 24 F 1.35107 * 119.85378 * 179.71857 * 23 22 21 25 25 C 1.38685 * 120.29332 * 359.74031 * 23 22 21 26 26 C 1.37792 * 120.14269 * 0.02684 * 25 23 22 27 27 H 1.08999 * 109.46762 * 58.17530 * 1 2 3 28 28 H 1.08992 * 109.47712 * 178.17511 * 1 2 3 29 29 H 1.09000 * 109.46887 * 298.18354 * 1 2 3 30 30 H 1.07998 * 120.00275 * 185.61005 * 3 2 1 31 31 H 0.97002 * 120.00024 * 0.02562 * 6 4 3 32 32 H 1.08997 * 109.47426 * 300.00709 * 10 7 6 33 33 H 1.09006 * 109.47125 * 60.00155 * 10 7 6 34 34 H 1.09002 * 109.47011 * 300.00106 * 11 10 7 35 35 H 1.08992 * 109.46796 * 59.99972 * 11 10 7 36 36 H 0.97003 * 119.99639 * 179.97438 * 15 14 12 37 37 H 1.08003 * 120.07119 * 359.97438 * 21 20 2 38 38 H 1.08004 * 119.92643 * 180.22819 * 22 21 20 39 39 H 1.07998 * 119.92849 * 179.97438 * 25 23 22 40 40 H 1.07992 * 120.06983 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1816 1.1681 0.0000 4 6 1.4551 2.4325 0.1237 5 8 0.2381 2.4369 0.1305 6 7 2.1339 3.5919 0.2303 7 16 1.3120 5.0233 0.3635 8 8 2.3331 6.0098 0.4212 9 8 0.3813 4.9942 -0.7100 10 6 0.4510 4.9045 1.9557 11 6 -0.3535 6.1833 2.1972 12 6 -1.0683 6.0848 3.5202 13 1 -0.9599 5.1984 4.1279 14 6 -1.8614 7.1256 3.9545 15 7 -1.9937 8.2046 3.2144 16 14 -2.7479 7.0032 5.5942 17 1 -1.8782 7.5454 6.6689 18 1 -4.0083 7.7863 5.5352 19 1 -3.0621 5.5807 5.8821 20 6 2.2425 -1.2741 0.0006 21 6 3.0319 -1.6301 -1.0981 22 6 3.7216 -2.8228 -1.0894 23 6 3.6265 -3.6743 0.0010 24 9 4.3008 -4.8451 0.0010 25 6 2.8419 -3.3297 1.0914 26 6 2.1508 -2.1376 1.0974 27 1 -0.3633 0.5419 -0.8732 28 1 -0.3634 -1.0270 -0.0327 29 1 -0.3633 0.4854 0.9058 30 1 3.2577 1.1703 -0.0914 31 1 3.1039 3.5884 0.2246 32 1 -0.2230 4.0480 1.9413 33 1 1.1813 4.7787 2.7551 34 1 0.3209 7.0395 2.2118 35 1 -1.0837 6.3095 1.3979 36 1 -2.5520 8.9367 3.5198 37 1 3.1030 -0.9700 -1.9500 38 1 4.3344 -3.0970 -1.9355 39 1 2.7717 -3.9975 1.9373 40 1 1.5398 -1.8706 1.9469 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181264834.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:03 Heat of formation + Delta-G solvation = -148.011278 kcal Electronic energy + Delta-G solvation = -26141.334834 eV Core-core repulsion = 21961.862039 eV Total energy + Delta-G solvation = -4179.472794 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.91382 -41.35755 -40.01931 -38.26925 -37.20030 -35.99947 -35.93674 -35.46732 -33.16579 -32.18990 -30.65562 -28.95517 -27.63201 -25.03372 -23.91779 -23.65922 -22.98928 -20.90416 -20.37692 -19.23039 -18.66104 -18.38891 -18.35338 -17.33074 -17.23777 -16.83654 -16.60702 -16.56004 -16.40339 -16.16920 -15.60599 -15.28156 -15.17354 -14.54702 -14.50567 -14.46169 -14.37254 -13.81719 -13.77833 -13.61072 -13.34091 -13.23032 -13.18060 -12.94425 -12.85272 -12.80657 -12.72292 -12.28851 -12.22137 -12.03038 -11.95691 -11.71837 -11.15379 -11.00876 -10.65033 -10.44929 -10.12715 -9.49975 -8.26835 -6.40696 -0.96321 -0.30442 0.25505 0.26761 1.40483 1.42736 1.46961 1.53948 1.82403 2.37378 2.52373 2.61538 3.06015 3.07150 3.23290 3.29361 3.71979 3.80064 3.86889 3.94782 4.03743 4.06572 4.14170 4.27200 4.38035 4.56623 4.70918 4.80527 4.85255 4.96450 5.01460 5.13497 5.14083 5.23822 5.24341 5.27693 5.39518 5.45285 5.66980 5.81531 5.85242 6.04528 6.52583 6.71930 7.29075 8.85517 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.016333 B = 0.002305 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.929149 B =12145.269903 C =13280.543092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.036 3.964 3 C -0.218 4.218 4 C 0.559 3.441 5 O -0.527 6.527 6 N -1.035 6.035 7 S 2.603 3.397 8 O -0.974 6.974 9 O -0.978 6.978 10 C -0.578 4.578 11 C 0.022 3.978 12 C -0.539 4.539 13 H 0.074 0.926 14 C -0.004 4.004 15 N -0.933 5.933 16 Si 0.975 3.025 17 H -0.268 1.268 18 H -0.283 1.283 19 H -0.260 1.260 20 C -0.083 4.083 21 C -0.070 4.070 22 C -0.153 4.153 23 C 0.086 3.914 24 F -0.148 7.148 25 C -0.154 4.154 26 C -0.070 4.070 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.173 0.827 31 H 0.449 0.551 32 H 0.136 0.864 33 H 0.150 0.850 34 H 0.014 0.986 35 H 0.005 0.995 36 H 0.268 0.732 37 H 0.155 0.845 38 H 0.155 0.845 39 H 0.153 0.847 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.144 -25.773 -5.976 30.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.034 3.966 3 C -0.240 4.240 4 C 0.352 3.648 5 O -0.404 6.404 6 N -0.801 5.801 7 S 2.702 3.298 8 O -0.964 6.964 9 O -0.968 6.968 10 C -0.711 4.711 11 C -0.017 4.017 12 C -0.578 4.578 13 H 0.092 0.908 14 C -0.203 4.203 15 N -0.572 5.572 16 Si 0.799 3.201 17 H -0.193 1.193 18 H -0.208 1.208 19 H -0.184 1.184 20 C -0.083 4.083 21 C -0.088 4.088 22 C -0.171 4.171 23 C 0.067 3.933 24 F -0.127 7.127 25 C -0.172 4.172 26 C -0.088 4.088 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.190 0.810 31 H 0.290 0.710 32 H 0.154 0.846 33 H 0.168 0.832 34 H 0.032 0.968 35 H 0.023 0.977 36 H 0.077 0.923 37 H 0.173 0.827 38 H 0.172 0.828 39 H 0.170 0.830 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 13.270 -24.973 -6.677 29.058 hybrid contribution -0.095 0.030 1.060 1.065 sum 13.175 -24.943 -5.616 28.763 Atomic orbital electron populations 1.21143 0.90329 1.02838 1.03828 1.21208 0.95959 0.91453 0.87954 1.22769 1.01961 0.88693 1.10572 1.18851 0.87020 0.85282 0.73647 1.91023 1.14547 1.87160 1.47656 1.54712 1.22507 1.22979 1.79938 1.05242 0.74129 0.72717 0.77718 1.93558 1.57374 1.57252 1.88246 1.93544 1.65245 1.85367 1.52622 1.30232 1.12942 1.08464 1.19435 1.18824 0.94521 0.89968 0.98344 1.21470 1.28904 1.03310 1.04090 0.90776 1.26126 0.97423 0.94779 1.01949 1.70098 1.40037 1.07250 1.39834 0.85290 0.77690 0.78814 0.78323 1.19306 1.20811 1.18363 1.18941 0.99188 0.94051 0.96129 1.21395 0.93564 0.95933 0.97865 1.21297 1.02458 0.94716 0.98639 1.18200 0.95373 0.82893 0.96853 1.91496 1.78412 1.45920 1.96876 1.21276 0.98446 0.98760 0.98743 1.21290 0.97650 0.91847 0.98000 0.90541 0.90401 0.90193 0.80982 0.71046 0.84571 0.83239 0.96784 0.97659 0.92337 0.82719 0.82756 0.82954 0.83192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 8.33 71.24 0.59 -1.67 16 2 C 0.04 0.54 5.48 -18.30 -0.10 0.44 16 3 C -0.22 -3.29 9.64 23.61 0.23 -3.07 16 4 C 0.56 13.42 7.45 86.35 0.64 14.06 16 5 O -0.53 -16.81 11.26 12.09 0.14 -16.67 16 6 N -1.03 -23.86 5.60 -176.63 -0.99 -24.85 16 7 S 2.60 92.93 5.11 -56.49 -0.29 92.65 16 8 O -0.97 -38.00 18.08 -127.65 -2.31 -40.31 16 9 O -0.98 -43.02 17.03 -120.69 -2.05 -45.08 16 10 C -0.58 -22.64 5.83 71.98 0.42 -22.22 16 11 C 0.02 1.19 4.98 29.85 0.15 1.34 16 12 C -0.54 -30.26 9.11 25.60 0.23 -30.03 16 13 H 0.07 3.86 7.74 -2.91 -0.02 3.84 16 14 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 15 N -0.93 -57.02 13.29 21.45 0.28 -56.74 16 16 Si 0.98 43.60 29.54 68.60 2.03 45.62 16 17 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 18 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 19 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 20 C -0.08 -0.97 5.23 -20.15 -0.11 -1.07 16 21 C -0.07 -0.67 9.73 22.56 0.22 -0.45 16 22 C -0.15 -1.54 10.01 22.27 0.22 -1.32 16 23 C 0.09 1.09 7.31 22.48 0.16 1.26 16 24 F -0.15 -2.27 17.26 44.97 0.78 -1.49 16 25 C -0.15 -1.67 10.01 22.27 0.22 -1.44 16 26 C -0.07 -0.75 9.78 22.57 0.22 -0.53 16 27 H 0.08 1.67 7.33 -2.39 -0.02 1.65 16 28 H 0.08 1.08 7.99 -2.39 -0.02 1.06 16 29 H 0.08 1.69 7.17 -2.39 -0.02 1.68 16 30 H 0.17 1.34 8.06 -2.91 -0.02 1.31 16 31 H 0.45 6.20 8.77 -96.75 -0.85 5.35 16 32 H 0.14 5.19 7.20 -2.39 -0.02 5.18 16 33 H 0.15 4.87 8.14 -2.39 -0.02 4.85 16 34 H 0.01 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 37 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16 38 H 0.15 1.01 8.06 -2.91 -0.02 0.98 16 39 H 0.15 1.16 8.06 -2.91 -0.02 1.14 16 40 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 Total: -1.00 -80.76 366.03 1.39 -79.37 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 0.23 Total: 11.99 kcal Atomic # 6 Polarization: -48.06 SS G_CDS: 3.57 Total: -44.49 kcal Atomic # 7 Polarization: -80.88 SS G_CDS: -0.70 Total: -81.59 kcal Atomic # 8 Polarization: -97.84 SS G_CDS: -4.23 Total: -102.06 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.78 Total: -1.49 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: 92.93 SS G_CDS: -0.29 Total: 92.65 kcal Total: -80.76 1.39 -79.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181264834.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.640 kcal (2) G-P(sol) polarization free energy of solvation -80.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds