Wall clock time and date at job start Sat Apr 11 2020 06:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99744 * 2 1 4 4 H 1.48501 * 109.47117 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47242 * 299.99963 * 3 2 1 6 6 H 1.48500 * 109.47218 * 60.00265 * 3 2 1 7 7 C 1.37872 * 120.00416 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00921 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99787 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47051 * 180.02562 * 9 7 2 11 11 S 1.81407 * 109.46969 * 180.02562 * 10 9 7 12 12 O 1.42095 * 110.54136 * 68.37316 * 11 10 9 13 13 O 1.42105 * 110.54125 * 291.62109 * 11 10 9 14 14 N 1.65599 * 104.45017 * 179.97438 * 11 10 9 15 15 C 1.34777 * 119.99995 * 64.99721 * 14 11 10 16 16 O 1.21285 * 119.99944 * 4.26306 * 15 14 11 17 17 C 1.50703 * 119.99886 * 184.26623 * 15 14 11 18 18 C 1.50699 * 115.55345 * 51.95932 * 17 15 14 19 19 C 1.38271 * 119.98345 * 15.99485 * 18 17 15 20 20 C 1.38222 * 120.04744 * 179.72102 * 19 18 17 21 21 C 1.38215 * 120.02724 * 0.30221 * 20 19 18 22 22 C 1.38439 * 119.97306 * 359.97283 * 21 20 19 23 23 F 1.35110 * 120.02300 * 180.02562 * 22 21 20 24 24 C 1.38173 * 119.99077 * 196.26918 * 18 17 15 25 25 C 1.53001 * 117.49569 * 197.63271 * 17 15 14 26 26 C 1.53001 * 117.49793 * 266.28863 * 17 15 14 27 27 H 0.97002 * 120.00089 * 359.97438 * 1 2 3 28 28 H 1.08993 * 109.47379 * 59.99974 * 9 7 2 29 29 H 1.09004 * 109.47363 * 299.99967 * 9 7 2 30 30 H 1.08997 * 109.47486 * 60.00364 * 10 9 7 31 31 H 1.08998 * 109.47305 * 299.99310 * 10 9 7 32 32 H 0.96998 * 120.00483 * 245.00415 * 14 11 10 33 33 H 1.08000 * 119.97332 * 0.02562 * 19 18 17 34 34 H 1.07995 * 119.98397 * 180.27622 * 20 19 18 35 35 H 1.07997 * 120.01669 * 180.02562 * 21 20 19 36 36 H 1.08003 * 120.01256 * 0.02562 * 24 18 17 37 37 H 1.09001 * 117.49769 * 215.00127 * 25 17 15 38 38 H 1.08996 * 117.50149 * 0.02562 * 25 17 15 39 39 H 1.09002 * 117.49637 * 359.97438 * 26 17 15 40 40 H 1.08998 * 117.50309 * 144.97095 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 16 1.3384 -5.2330 -0.0013 12 8 0.6648 -5.4193 -1.2385 13 8 0.6640 -5.4201 1.2355 14 7 2.5206 -6.3927 -0.0020 15 6 3.3472 -6.5130 1.0558 16 8 3.1770 -5.8246 2.0397 17 6 4.4829 -7.5027 1.0158 18 6 5.3842 -7.4096 -0.1884 19 6 5.3575 -6.2803 -0.9858 20 6 6.1878 -6.1911 -2.0873 21 6 7.0412 -7.2334 -2.3964 22 6 7.0646 -8.3670 -1.6019 23 9 7.8988 -9.3863 -1.9029 24 6 6.2328 -8.4551 -0.4984 25 6 5.1226 -7.8980 2.3482 26 6 4.2295 -8.8928 1.6027 27 1 -0.4850 0.8401 0.0004 28 1 0.6241 -2.5567 -0.8902 29 1 0.6248 -2.5571 0.8897 30 1 2.8720 -3.6043 0.8894 31 1 2.8720 -3.6043 -0.8906 32 1 2.6182 -6.9854 -0.7636 33 1 4.6910 -5.4653 -0.7450 34 1 6.1693 -5.3067 -2.7068 35 1 7.6901 -7.1634 -3.2568 36 1 6.2499 -9.3391 0.1218 37 1 6.1955 -8.0906 2.3539 38 1 4.7218 -7.4425 3.2537 39 1 3.2415 -9.0912 2.0182 40 1 4.7143 -9.7400 1.1177 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181284493.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:06 Heat of formation + Delta-G solvation = -131.533455 kcal Electronic energy + Delta-G solvation = -27399.893974 eV Core-core repulsion = 23221.135712 eV Total energy + Delta-G solvation = -4178.758262 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.89170 -42.03001 -39.99139 -38.36368 -37.51915 -37.27704 -35.98193 -35.72442 -33.21045 -31.74824 -31.51403 -27.69759 -26.69628 -24.07644 -23.80217 -23.58551 -23.19795 -21.48135 -20.77929 -19.50669 -19.26545 -18.42780 -17.90534 -17.44192 -17.24030 -17.10365 -16.72024 -16.58998 -16.55555 -16.31538 -16.08726 -15.41300 -15.22371 -14.94872 -14.51305 -14.17367 -14.03380 -13.91554 -13.79509 -13.63430 -13.42621 -13.31068 -13.01237 -12.92604 -12.85335 -12.59962 -12.34697 -12.28921 -12.25094 -12.05796 -11.86878 -11.76254 -11.69884 -11.32386 -11.09941 -10.67061 -9.91659 -9.64185 -8.27939 -6.41928 -1.09187 0.06196 0.18000 0.79855 1.30350 1.40614 1.41591 1.54750 2.34481 2.36615 2.49237 2.84704 2.85805 3.04983 3.06279 3.18867 3.34083 3.57551 3.74778 3.84434 3.93899 3.97703 3.99181 4.08511 4.12230 4.37932 4.52201 4.64630 4.67572 4.86285 4.92787 5.02115 5.09854 5.15254 5.19746 5.20938 5.28716 5.41146 5.53918 5.65905 5.85520 6.02094 6.27523 6.70861 7.28237 8.84702 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.012923 B = 0.003307 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.178084 B = 8463.652028 C = 9522.611704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.975 3.025 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.280 1.280 7 C -0.538 4.538 8 H 0.076 0.924 9 C 0.023 3.977 10 C -0.577 4.577 11 S 2.593 3.407 12 O -0.967 6.967 13 O -0.976 6.976 14 N -1.036 6.036 15 C 0.575 3.425 16 O -0.516 6.516 17 C -0.146 4.146 18 C -0.015 4.015 19 C -0.149 4.149 20 C -0.080 4.080 21 C -0.155 4.155 22 C 0.094 3.906 23 F -0.144 7.144 24 C -0.144 4.144 25 C -0.127 4.127 26 C -0.127 4.127 27 H 0.268 0.732 28 H 0.016 0.984 29 H 0.005 0.995 30 H 0.135 0.865 31 H 0.155 0.845 32 H 0.448 0.552 33 H 0.121 0.879 34 H 0.155 0.845 35 H 0.154 0.846 36 H 0.162 0.838 37 H 0.133 0.867 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.352 -20.837 -3.029 27.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.201 4.201 3 Si 0.798 3.202 4 H -0.180 1.180 5 H -0.200 1.200 6 H -0.205 1.205 7 C -0.577 4.577 8 H 0.094 0.906 9 C -0.016 4.016 10 C -0.710 4.710 11 S 2.692 3.308 12 O -0.958 6.958 13 O -0.966 6.966 14 N -0.802 5.802 15 C 0.362 3.638 16 O -0.389 6.389 17 C -0.151 4.151 18 C -0.015 4.015 19 C -0.167 4.167 20 C -0.098 4.098 21 C -0.173 4.173 22 C 0.075 3.925 23 F -0.122 7.122 24 C -0.162 4.162 25 C -0.165 4.165 26 C -0.163 4.163 27 H 0.077 0.923 28 H 0.035 0.965 29 H 0.023 0.977 30 H 0.154 0.846 31 H 0.173 0.827 32 H 0.288 0.712 33 H 0.139 0.861 34 H 0.172 0.828 35 H 0.171 0.829 36 H 0.179 0.821 37 H 0.151 0.849 38 H 0.121 0.879 39 H 0.127 0.873 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 16.175 -20.502 -2.320 26.217 hybrid contribution 0.375 1.053 -0.426 1.196 sum 16.550 -19.449 -2.746 25.685 Atomic orbital electron populations 1.70100 1.08028 1.28348 1.50741 1.26102 0.95879 1.03838 0.94285 0.85254 0.79151 0.77937 0.77853 1.17952 1.20043 1.20542 1.21485 0.93975 0.90529 1.51692 0.90595 1.18834 0.93413 0.92637 0.96711 1.30240 1.12928 1.15219 1.12628 1.05624 0.74846 0.77031 0.73290 1.93568 1.71287 1.85507 1.45413 1.93552 1.71742 1.84901 1.46358 1.54915 1.47953 1.49334 1.27950 1.19888 0.81464 0.82165 0.80291 1.90923 1.71693 1.44476 1.31804 1.20107 0.97323 1.00050 0.97669 1.18427 0.95613 0.94172 0.93291 1.21309 1.01100 0.97893 0.96417 1.21250 0.93420 0.98950 0.96134 1.21441 1.01672 0.92808 1.01388 1.17759 0.92021 0.86087 0.96667 1.91509 1.69660 1.58127 1.92935 1.20983 0.96861 1.00565 0.97799 1.23359 1.01375 1.00009 0.91722 1.23512 1.02924 0.89668 1.00242 0.92307 0.96549 0.97710 0.84648 0.82667 0.71212 0.86144 0.82775 0.82856 0.82081 0.84855 0.87902 0.87350 0.83812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.60 13.29 21.45 0.28 -56.32 16 2 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 3 Si 0.97 43.25 29.54 68.60 2.03 45.28 16 4 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 5 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 6 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 7 C -0.54 -29.85 9.11 25.60 0.23 -29.62 16 8 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 9 C 0.02 1.22 4.98 29.85 0.15 1.36 16 10 C -0.58 -22.40 5.84 71.98 0.42 -21.98 16 11 S 2.59 94.10 5.12 -56.49 -0.29 93.81 16 12 O -0.97 -37.91 18.08 -127.65 -2.31 -40.22 16 13 O -0.98 -43.58 16.95 -120.42 -2.04 -45.63 16 14 N -1.04 -25.75 4.60 -173.53 -0.80 -26.54 16 15 C 0.57 14.78 5.82 87.66 0.51 15.29 16 16 O -0.52 -17.66 14.63 14.31 0.21 -17.45 16 17 C -0.15 -2.50 2.45 -53.67 -0.13 -2.63 16 18 C -0.01 -0.22 5.49 -19.87 -0.11 -0.33 16 19 C -0.15 -2.52 8.89 22.27 0.20 -2.32 16 20 C -0.08 -1.12 10.04 22.26 0.22 -0.90 16 21 C -0.15 -2.04 10.03 22.31 0.22 -1.81 16 22 C 0.09 1.35 7.30 22.37 0.16 1.51 16 23 F -0.14 -2.28 17.27 44.97 0.78 -1.50 16 24 C -0.14 -1.79 9.06 22.31 0.20 -1.59 16 25 C -0.13 -1.75 9.55 30.62 0.29 -1.45 16 26 C -0.13 -1.39 9.53 30.62 0.29 -1.10 16 27 H 0.27 15.15 8.31 -92.71 -0.77 14.37 16 28 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.00 0.27 8.14 -2.38 -0.02 0.25 16 30 H 0.14 5.14 7.37 -2.39 -0.02 5.12 16 31 H 0.16 4.86 8.14 -2.39 -0.02 4.84 16 32 H 0.45 7.73 8.57 -96.75 -0.83 6.90 16 33 H 0.12 2.19 6.58 -2.91 -0.02 2.17 16 34 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 35 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 36 H 0.16 1.20 6.33 -2.91 -0.02 1.18 16 37 H 0.13 1.21 8.12 -2.39 -0.02 1.19 16 38 H 0.10 1.77 7.78 -2.39 -0.02 1.75 16 39 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.14 0.70 6.48 -2.39 -0.02 0.69 16 Total: -1.00 -80.09 360.30 1.26 -78.83 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 0.27 Total: 15.00 kcal Atomic # 6 Polarization: -48.39 SS G_CDS: 3.13 Total: -45.26 kcal Atomic # 7 Polarization: -82.35 SS G_CDS: -0.51 Total: -82.86 kcal Atomic # 8 Polarization: -99.16 SS G_CDS: -4.14 Total: -103.29 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.78 Total: -1.50 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: 94.10 SS G_CDS: -0.29 Total: 93.81 kcal Total: -80.09 1.26 -78.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181284493.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.704 kcal (2) G-P(sol) polarization free energy of solvation -80.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds