Wall clock time and date at job start Sat Apr 11 2020 06:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34223 * 116.99918 * 2 1 4 4 O 1.20823 * 120.00266 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99646 * 179.97438 * 3 2 1 6 6 H 1.08999 * 109.47530 * 59.99660 * 5 3 2 7 7 N 1.46502 * 109.47083 * 179.97438 * 5 3 2 8 8 C 1.34785 * 120.00172 * 275.00216 * 7 5 3 9 9 O 1.21280 * 119.99396 * 359.97438 * 8 7 5 10 10 C 1.50690 * 119.99981 * 179.97438 * 8 7 5 11 11 S 1.81000 * 109.47222 * 179.97438 * 10 8 7 12 12 C 1.76192 * 100.00390 * 180.02562 * 11 10 8 13 13 H 1.08002 * 120.00166 * 359.97438 * 12 11 10 14 14 C 1.38804 * 120.00052 * 180.02562 * 12 11 10 15 15 N 1.31632 * 119.99846 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00102 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.47107 * 90.00079 * 16 14 12 18 18 H 1.48499 * 109.47301 * 210.00436 * 16 14 12 19 19 H 1.48503 * 109.46825 * 330.00409 * 16 14 12 20 20 C 1.50698 * 109.47220 * 299.99561 * 5 3 2 21 21 C 1.38265 * 119.97820 * 280.00212 * 20 5 3 22 22 C 1.38168 * 120.03012 * 180.02562 * 21 20 5 23 23 C 1.38485 * 119.97332 * 359.97438 * 22 21 20 24 24 F 1.35102 * 120.02315 * 179.72741 * 23 22 21 25 25 C 1.38440 * 119.94872 * 359.97438 * 23 22 21 26 26 C 1.50694 * 120.01195 * 179.97438 * 25 23 22 27 27 C 1.38221 * 119.97131 * 0.02574 * 25 23 22 28 28 H 1.09002 * 109.47026 * 60.00783 * 1 2 3 29 29 H 1.09001 * 109.47292 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47335 * 300.00301 * 1 2 3 31 31 H 0.96999 * 119.99836 * 94.99821 * 7 5 3 32 32 H 1.08997 * 109.47608 * 300.00019 * 10 8 7 33 33 H 1.09004 * 109.47342 * 60.00274 * 10 8 7 34 34 H 0.96992 * 119.99784 * 180.02562 * 15 14 12 35 35 H 1.08002 * 119.98387 * 0.02562 * 21 20 5 36 36 H 1.08001 * 120.02005 * 179.97438 * 22 21 20 37 37 H 1.09001 * 109.46710 * 90.00581 * 26 25 23 38 38 H 1.09004 * 109.46977 * 210.00220 * 26 25 23 39 39 H 1.08998 * 109.47601 * 330.00810 * 26 25 23 40 40 H 1.08001 * 119.98751 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 1 3.9564 0.7804 -0.8891 7 7 3.9817 2.6796 -0.0002 8 6 4.0757 3.3540 -1.1634 9 8 3.8168 2.7976 -2.2094 10 6 4.5025 4.7992 -1.1640 11 16 4.5325 5.4187 -2.8644 12 6 5.0494 7.0783 -2.5765 13 1 5.2400 7.4175 -1.5690 14 6 5.2105 7.9502 -3.6444 15 7 5.5971 9.1900 -3.4293 16 14 4.8801 7.3640 -5.3870 17 1 3.4548 7.6037 -5.7280 18 1 5.7478 8.1102 -6.3332 19 1 5.1749 5.9118 -5.4849 20 6 4.1046 0.5919 1.2314 21 6 4.1037 1.2543 2.4451 22 6 4.5975 0.6294 3.5742 23 6 5.0930 -0.6610 3.4900 24 9 5.5811 -1.2709 4.5923 25 6 5.0925 -1.3236 2.2745 26 6 5.6319 -2.7276 2.1812 27 6 4.5980 -0.6965 1.1464 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 4.1891 3.1245 0.8365 32 1 3.7978 5.3865 -0.5754 33 1 5.4984 4.8842 -0.7292 34 1 5.7093 9.7993 -4.1755 35 1 3.7168 2.2605 2.5106 36 1 4.5971 1.1471 4.5221 37 1 4.8262 -3.4391 2.3624 38 1 6.0454 -2.8926 1.1862 39 1 6.4140 -2.8668 2.9274 40 1 4.5978 -1.2130 0.1979 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183797678.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:14 Heat of formation + Delta-G solvation = -139.599792 kcal Electronic energy + Delta-G solvation = -26568.649774 eV Core-core repulsion = 22389.541729 eV Total energy + Delta-G solvation = -4179.108045 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.29892 -41.16095 -39.65557 -39.07829 -36.67061 -35.21085 -33.13577 -32.44470 -31.95047 -29.57603 -28.43537 -27.46386 -26.37797 -25.59005 -23.26765 -22.20529 -21.18300 -20.37143 -18.21396 -18.01723 -17.84805 -17.21754 -17.07498 -16.76162 -16.31352 -16.07095 -15.91181 -15.09860 -14.97932 -14.84507 -14.30602 -14.00196 -13.95487 -13.79160 -13.73203 -13.51949 -13.39546 -13.28044 -12.80529 -12.59435 -12.49807 -12.26622 -12.08836 -11.99458 -11.44195 -11.27787 -11.01427 -10.98486 -10.88520 -10.64098 -9.89758 -9.74286 -9.43433 -9.34079 -9.00603 -8.98933 -8.52327 -6.93028 -6.29338 -4.01313 0.55363 0.74627 1.99670 2.18214 2.68174 2.94750 3.01946 3.31869 3.34637 3.49753 3.60690 3.79033 3.96403 4.18533 4.31738 4.32553 4.59369 4.65829 4.67342 4.75824 4.88569 4.89946 4.99142 5.09575 5.10241 5.17843 5.27517 5.30682 5.32489 5.47796 5.61775 5.67263 5.72960 5.80143 5.87636 5.97874 6.10127 6.20034 6.38774 7.33596 7.53999 7.93750 8.28241 8.41492 9.16673 10.79911 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.015240 B = 0.002640 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.826822 B =10602.196083 C =11539.645194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.356 6.356 3 C 0.451 3.549 4 O -0.485 6.485 5 C 0.206 3.794 6 H 0.137 0.863 7 N -0.716 5.716 8 C 0.541 3.459 9 O -0.512 6.512 10 C -0.122 4.122 11 S -0.139 6.139 12 C -0.521 4.521 13 H 0.089 0.911 14 C 0.096 3.904 15 N -0.880 5.880 16 Si 0.857 3.143 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.235 1.235 20 C -0.101 4.101 21 C -0.084 4.084 22 C -0.144 4.144 23 C 0.104 3.896 24 F -0.136 7.136 25 C -0.115 4.115 26 C -0.115 4.115 27 C -0.061 4.061 28 H 0.065 0.935 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.407 0.593 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.271 0.729 35 H 0.135 0.865 36 H 0.141 0.859 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.799 -24.660 15.090 29.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.272 6.272 3 C 0.291 3.709 4 O -0.370 6.370 5 C 0.098 3.902 6 H 0.155 0.845 7 N -0.372 5.372 8 C 0.328 3.672 9 O -0.385 6.385 10 C -0.273 4.273 11 S 0.087 5.913 12 C -0.669 4.669 13 H 0.107 0.893 14 C -0.113 4.113 15 N -0.516 5.516 16 Si 0.681 3.319 17 H -0.192 1.192 18 H -0.199 1.199 19 H -0.159 1.159 20 C -0.102 4.102 21 C -0.103 4.103 22 C -0.162 4.162 23 C 0.085 3.915 24 F -0.115 7.115 25 C -0.116 4.116 26 C -0.172 4.172 27 C -0.080 4.080 28 H 0.083 0.917 29 H 0.120 0.880 30 H 0.080 0.920 31 H 0.243 0.757 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.081 0.919 35 H 0.153 0.847 36 H 0.159 0.841 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.399 -25.102 13.288 28.741 hybrid contribution 0.029 1.027 1.110 1.512 sum -4.370 -24.076 14.398 28.391 Atomic orbital electron populations 1.23280 0.76187 1.03642 1.02722 1.86480 1.23486 1.33063 1.84144 1.24133 0.92076 0.81867 0.72866 1.90715 1.66356 1.36267 1.43667 1.19006 0.86943 0.84941 0.99356 0.84542 1.45826 1.70677 1.10121 1.10552 1.20395 0.75641 0.88395 0.82760 1.90707 1.47499 1.69207 1.31114 1.23254 1.05081 0.93377 1.05570 1.84790 1.89952 1.13400 1.03111 1.22306 1.52718 0.93702 0.98149 0.89301 1.24710 0.93327 0.94004 0.99259 1.69936 1.44742 1.04427 1.32543 0.86738 0.79417 0.81684 0.84025 1.19204 1.19922 1.15915 1.19459 1.01925 0.95327 0.93443 1.20832 0.98113 1.00195 0.91145 1.21088 1.01147 0.93748 1.00265 1.17610 0.99102 0.91961 0.82827 1.91497 1.85406 1.83022 1.51532 1.19922 1.01819 0.98027 0.91847 1.20753 1.01301 0.91489 1.03638 1.20775 0.95545 0.93190 0.98466 0.91670 0.88037 0.91962 0.75671 0.88059 0.88066 0.91922 0.84700 0.84136 0.90536 0.90529 0.91039 0.84057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.56 101.05 1.07 1.38 16 2 O -0.36 -3.97 10.48 -39.24 -0.41 -4.38 16 3 C 0.45 5.97 7.27 36.01 0.26 6.23 16 4 O -0.49 -8.00 16.07 -18.75 -0.30 -8.30 16 5 C 0.21 2.36 2.68 -70.23 -0.19 2.17 16 6 H 0.14 1.56 7.44 -51.93 -0.39 1.18 16 7 N -0.72 -9.20 4.56 -56.07 -0.26 -9.45 16 8 C 0.54 9.54 7.68 -10.99 -0.08 9.45 16 9 O -0.51 -10.79 15.52 5.56 0.09 -10.70 16 10 C -0.12 -2.35 6.16 36.00 0.22 -2.13 16 11 S -0.14 -3.51 18.55 -107.50 -1.99 -5.50 16 12 C -0.52 -14.98 10.04 30.94 0.31 -14.67 16 13 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 14 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 15 N -0.88 -26.56 13.97 55.49 0.78 -25.78 16 16 Si 0.86 21.78 27.74 -169.99 -4.72 17.06 16 17 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 19 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 20 C -0.10 -0.90 4.88 -104.62 -0.51 -1.41 16 21 C -0.08 -0.68 9.05 -39.60 -0.36 -1.04 16 22 C -0.14 -1.11 10.03 -39.52 -0.40 -1.51 16 23 C 0.10 0.89 7.24 -39.42 -0.29 0.60 16 24 F -0.14 -1.24 16.48 2.25 0.04 -1.20 16 25 C -0.12 -0.89 5.89 -104.56 -0.62 -1.51 16 26 C -0.12 -0.66 9.84 36.00 0.35 -0.31 16 27 C -0.06 -0.48 9.32 -39.59 -0.37 -0.85 16 28 H 0.06 0.62 8.13 -51.93 -0.42 0.19 16 29 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 31 H 0.41 4.08 6.87 -40.82 -0.28 3.80 16 32 H 0.10 1.85 8.14 -51.92 -0.42 1.43 16 33 H 0.10 1.75 8.14 -51.91 -0.42 1.33 16 34 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.14 0.94 6.92 -52.49 -0.36 0.58 16 36 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.35 8.09 -51.93 -0.42 -0.07 16 39 H 0.07 0.41 7.64 -51.93 -0.40 0.02 16 40 H 0.14 0.86 8.04 -52.49 -0.42 0.43 16 LS Contribution 368.65 15.07 5.56 5.56 Total: -1.00 -36.08 368.65 -6.71 -42.79 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -4.80 Total: 0.79 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -0.69 Total: -0.88 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: 0.52 Total: -35.23 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.63 Total: -23.38 kcal Atomic # 9 Polarization: -1.24 SS G_CDS: 0.04 Total: -1.20 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.72 Total: 17.06 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -1.99 Total: -5.50 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.08 -6.71 -42.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183797678.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.807 kcal (2) G-P(sol) polarization free energy of solvation -36.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds