Wall clock time and date at job start Sat Apr 11 2020 06:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34223 * 116.99918 * 2 1 4 4 O 1.20823 * 120.00266 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99646 * 179.97438 * 3 2 1 6 6 H 1.08999 * 109.47530 * 59.99660 * 5 3 2 7 7 N 1.46502 * 109.47083 * 179.97438 * 5 3 2 8 8 C 1.34785 * 120.00172 * 275.00216 * 7 5 3 9 9 O 1.21280 * 119.99396 * 359.97438 * 8 7 5 10 10 C 1.50690 * 119.99981 * 179.97438 * 8 7 5 11 11 S 1.81000 * 109.47222 * 179.97438 * 10 8 7 12 12 C 1.76192 * 100.00390 * 180.02562 * 11 10 8 13 13 H 1.08002 * 120.00166 * 359.97438 * 12 11 10 14 14 C 1.38804 * 120.00052 * 180.02562 * 12 11 10 15 15 N 1.31632 * 119.99846 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00102 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.47107 * 90.00079 * 16 14 12 18 18 H 1.48499 * 109.47301 * 210.00436 * 16 14 12 19 19 H 1.48503 * 109.46825 * 330.00409 * 16 14 12 20 20 C 1.50698 * 109.47220 * 299.99561 * 5 3 2 21 21 C 1.38265 * 119.97820 * 280.00212 * 20 5 3 22 22 C 1.38168 * 120.03012 * 180.02562 * 21 20 5 23 23 C 1.38485 * 119.97332 * 359.97438 * 22 21 20 24 24 F 1.35102 * 120.02315 * 179.72741 * 23 22 21 25 25 C 1.38440 * 119.94872 * 359.97438 * 23 22 21 26 26 C 1.50694 * 120.01195 * 179.97438 * 25 23 22 27 27 C 1.38221 * 119.97131 * 0.02574 * 25 23 22 28 28 H 1.09002 * 109.47026 * 60.00783 * 1 2 3 29 29 H 1.09001 * 109.47292 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47335 * 300.00301 * 1 2 3 31 31 H 0.96999 * 119.99836 * 94.99821 * 7 5 3 32 32 H 1.08997 * 109.47608 * 300.00019 * 10 8 7 33 33 H 1.09004 * 109.47342 * 60.00274 * 10 8 7 34 34 H 0.96992 * 119.99784 * 180.02562 * 15 14 12 35 35 H 1.08002 * 119.98387 * 0.02562 * 21 20 5 36 36 H 1.08001 * 120.02005 * 179.97438 * 22 21 20 37 37 H 1.09001 * 109.46710 * 90.00581 * 26 25 23 38 38 H 1.09004 * 109.46977 * 210.00220 * 26 25 23 39 39 H 1.08998 * 109.47601 * 330.00810 * 26 25 23 40 40 H 1.08001 * 119.98751 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 1 3.9564 0.7804 -0.8891 7 7 3.9817 2.6796 -0.0002 8 6 4.0757 3.3540 -1.1634 9 8 3.8168 2.7976 -2.2094 10 6 4.5025 4.7992 -1.1640 11 16 4.5325 5.4187 -2.8644 12 6 5.0494 7.0783 -2.5765 13 1 5.2400 7.4175 -1.5690 14 6 5.2105 7.9502 -3.6444 15 7 5.5971 9.1900 -3.4293 16 14 4.8801 7.3640 -5.3870 17 1 3.4548 7.6037 -5.7280 18 1 5.7478 8.1102 -6.3332 19 1 5.1749 5.9118 -5.4849 20 6 4.1046 0.5919 1.2314 21 6 4.1037 1.2543 2.4451 22 6 4.5975 0.6294 3.5742 23 6 5.0930 -0.6610 3.4900 24 9 5.5811 -1.2709 4.5923 25 6 5.0925 -1.3236 2.2745 26 6 5.6319 -2.7276 2.1812 27 6 4.5980 -0.6965 1.1464 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 4.1891 3.1245 0.8365 32 1 3.7978 5.3865 -0.5754 33 1 5.4984 4.8842 -0.7292 34 1 5.7093 9.7993 -4.1755 35 1 3.7168 2.2605 2.5106 36 1 4.5971 1.1471 4.5221 37 1 4.8262 -3.4391 2.3624 38 1 6.0454 -2.8926 1.1862 39 1 6.4140 -2.8668 2.9274 40 1 4.5978 -1.2130 0.1979 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183797678.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:13 Heat of formation + Delta-G solvation = -162.615716 kcal Electronic energy + Delta-G solvation = -26569.647820 eV Core-core repulsion = 22389.541729 eV Total energy + Delta-G solvation = -4180.106090 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.95534 -42.15746 -40.61704 -40.11599 -37.69109 -36.27610 -34.67320 -33.78699 -32.92624 -30.81272 -29.30333 -28.02648 -27.87185 -27.19927 -23.93186 -23.00138 -22.27240 -21.40309 -20.00040 -18.93364 -18.67498 -18.30727 -18.25451 -17.59606 -17.41962 -17.12013 -16.91964 -16.71512 -16.34929 -15.80682 -15.61338 -15.20570 -14.91231 -14.81432 -14.69384 -14.35799 -14.28012 -14.21124 -14.08803 -13.69439 -13.35014 -13.18687 -13.16669 -13.02206 -12.87368 -12.78106 -12.56056 -12.02139 -11.95587 -11.87144 -11.86805 -11.23977 -11.17364 -10.57137 -10.55244 -9.96715 -9.65382 -9.00321 -8.51543 -6.22466 -0.10918 0.16307 0.90334 0.98731 1.19091 1.31761 1.45014 1.52247 1.72268 2.08828 2.24928 2.52124 2.69991 2.86773 3.11086 3.24514 3.58071 3.68960 3.71988 3.79387 3.97069 4.15824 4.20680 4.25995 4.27823 4.29982 4.44136 4.57758 4.65972 4.74801 4.78499 4.87294 4.98428 5.07162 5.17904 5.22457 5.26349 5.30294 5.70907 5.79109 6.11923 6.18845 6.54589 6.93378 6.96580 8.60900 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.015240 B = 0.002640 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.826822 B =10602.196083 C =11539.645194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.352 6.352 3 C 0.452 3.548 4 O -0.524 6.524 5 C 0.208 3.792 6 H 0.140 0.860 7 N -0.696 5.696 8 C 0.547 3.453 9 O -0.550 6.550 10 C -0.111 4.111 11 S -0.171 6.171 12 C -0.528 4.528 13 H 0.063 0.937 14 C 0.045 3.955 15 N -0.917 5.917 16 Si 0.914 3.086 17 H -0.265 1.265 18 H -0.258 1.258 19 H -0.234 1.234 20 C -0.106 4.106 21 C -0.089 4.089 22 C -0.144 4.144 23 C 0.091 3.909 24 F -0.142 7.142 25 C -0.117 4.117 26 C -0.116 4.116 27 C -0.060 4.060 28 H 0.054 0.946 29 H 0.138 0.862 30 H 0.063 0.937 31 H 0.421 0.579 32 H 0.112 0.888 33 H 0.123 0.877 34 H 0.277 0.723 35 H 0.144 0.856 36 H 0.157 0.843 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.909 -26.831 15.623 31.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.267 6.267 3 C 0.294 3.706 4 O -0.413 6.413 5 C 0.101 3.899 6 H 0.157 0.843 7 N -0.351 5.351 8 C 0.334 3.666 9 O -0.427 6.427 10 C -0.262 4.262 11 S 0.056 5.944 12 C -0.676 4.676 13 H 0.082 0.918 14 C -0.160 4.160 15 N -0.555 5.555 16 Si 0.736 3.264 17 H -0.189 1.189 18 H -0.183 1.183 19 H -0.158 1.158 20 C -0.107 4.107 21 C -0.107 4.107 22 C -0.162 4.162 23 C 0.072 3.928 24 F -0.120 7.120 25 C -0.118 4.118 26 C -0.172 4.172 27 C -0.079 4.079 28 H 0.073 0.927 29 H 0.156 0.844 30 H 0.082 0.918 31 H 0.261 0.739 32 H 0.130 0.870 33 H 0.141 0.859 34 H 0.086 0.914 35 H 0.162 0.838 36 H 0.174 0.826 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.501 -27.303 13.877 30.956 hybrid contribution 0.020 1.586 1.140 1.953 sum -4.481 -25.718 15.017 30.116 Atomic orbital electron populations 1.23576 0.74699 1.05929 1.02302 1.86475 1.24918 1.31827 1.83452 1.24418 0.92647 0.81853 0.71720 1.90702 1.67306 1.37505 1.45750 1.19110 0.86187 0.83775 1.00867 0.84298 1.45545 1.69053 1.10816 1.09735 1.20017 0.75457 0.87697 0.83467 1.90695 1.49558 1.69751 1.32688 1.23241 1.06926 0.94691 1.01347 1.84684 1.89851 1.11264 1.08613 1.22453 1.52317 0.95690 0.97142 0.91834 1.25564 0.93195 0.94152 1.03104 1.70014 1.45896 1.05563 1.34024 0.85877 0.79532 0.81347 0.79680 1.18933 1.18262 1.15809 1.19306 1.03027 0.95872 0.92533 1.20951 0.98101 1.00674 0.90953 1.21260 1.00530 0.93591 1.00842 1.17858 0.99482 0.92439 0.83021 1.91484 1.85543 1.83152 1.51850 1.20144 1.01329 0.98862 0.91432 1.20820 1.01536 0.90455 1.04427 1.20956 0.94874 0.92744 0.99297 0.92742 0.84414 0.91799 0.73922 0.86979 0.85890 0.91356 0.83799 0.82562 0.89612 0.89200 0.91240 0.82342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.64 16 2 O -0.35 -7.27 10.48 -51.35 -0.54 -7.81 16 3 C 0.45 11.46 7.27 71.24 0.52 11.98 16 4 O -0.52 -17.01 16.07 21.97 0.35 -16.66 16 5 C 0.21 4.44 2.68 43.50 0.12 4.56 16 6 H 0.14 2.97 7.44 -2.39 -0.02 2.95 16 7 N -0.70 -16.80 4.56 -449.69 -2.05 -18.85 16 8 C 0.55 18.69 7.68 87.65 0.67 19.36 16 9 O -0.55 -22.87 15.52 -3.03 -0.05 -22.92 16 10 C -0.11 -4.17 6.16 71.23 0.44 -3.74 16 11 S -0.17 -8.59 18.55 -56.49 -1.05 -9.64 16 12 C -0.53 -30.71 10.04 67.96 0.68 -30.03 16 13 H 0.06 3.89 8.03 -2.91 -0.02 3.86 16 14 C 0.05 2.66 5.50 84.86 0.47 3.12 16 15 N -0.92 -55.93 13.97 21.65 0.30 -55.63 16 16 Si 0.91 44.98 27.74 68.60 1.90 46.88 16 17 H -0.26 -12.80 7.11 99.48 0.71 -12.09 16 18 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 19 H -0.23 -11.42 6.74 99.48 0.67 -10.75 16 20 C -0.11 -1.69 4.88 -19.86 -0.10 -1.79 16 21 C -0.09 -1.26 9.05 22.26 0.20 -1.05 16 22 C -0.14 -1.94 10.03 22.31 0.22 -1.71 16 23 C 0.09 1.38 7.24 22.38 0.16 1.55 16 24 F -0.14 -2.37 16.48 44.97 0.74 -1.63 16 25 C -0.12 -1.55 5.89 -19.82 -0.12 -1.67 16 26 C -0.12 -1.06 9.84 71.23 0.70 -0.36 16 27 C -0.06 -0.80 9.32 22.26 0.21 -0.59 16 28 H 0.05 0.99 8.13 -2.39 -0.02 0.97 16 29 H 0.14 1.12 8.14 -2.39 -0.02 1.11 16 30 H 0.06 0.99 8.13 -2.39 -0.02 0.97 16 31 H 0.42 7.63 6.87 -92.71 -0.64 6.99 16 32 H 0.11 3.98 8.14 -2.40 -0.02 3.97 16 33 H 0.12 4.08 8.14 -2.39 -0.02 4.06 16 34 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 35 H 0.14 1.71 6.92 -2.91 -0.02 1.69 16 36 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 37 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.09 0.58 8.09 -2.38 -0.02 0.56 16 39 H 0.07 0.68 7.64 -2.39 -0.02 0.66 16 40 H 0.16 1.49 8.04 -2.91 -0.02 1.46 16 Total: -1.00 -78.21 368.65 5.40 -72.81 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 0.41 Total: 12.18 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 5.37 Total: 1.26 kcal Atomic # 7 Polarization: -72.73 SS G_CDS: -1.75 Total: -74.48 kcal Atomic # 8 Polarization: -47.15 SS G_CDS: -0.23 Total: -47.38 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.74 Total: -1.63 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.90 Total: 46.88 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.05 Total: -9.64 kcal Total: -78.21 5.40 -72.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183797678.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.808 kcal (2) G-P(sol) polarization free energy of solvation -78.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds