Wall clock time and date at job start Sat Apr 11 2020 06:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34227 * 116.99810 * 2 1 4 4 O 1.20828 * 119.99959 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99845 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.46958 * 299.99816 * 5 3 2 7 7 N 1.46505 * 109.46925 * 180.02562 * 5 3 2 8 8 C 1.34774 * 120.00336 * 85.00158 * 7 5 3 9 9 O 1.21287 * 119.99570 * 359.97438 * 8 7 5 10 10 C 1.50696 * 120.00452 * 180.02562 * 8 7 5 11 11 S 1.80995 * 109.47362 * 179.97438 * 10 8 7 12 12 C 1.76196 * 99.99989 * 179.97438 * 11 10 8 13 13 H 1.08004 * 120.00238 * 359.97438 * 12 11 10 14 14 C 1.38809 * 119.99980 * 179.97438 * 12 11 10 15 15 N 1.31628 * 119.99672 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 119.99926 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47322 * 60.00020 * 16 14 12 18 18 H 1.48499 * 109.47148 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47484 * 300.00110 * 16 14 12 20 20 C 1.50701 * 109.47196 * 60.00402 * 5 3 2 21 21 C 1.38263 * 119.97594 * 79.97591 * 20 5 3 22 22 C 1.38176 * 120.02823 * 180.02562 * 21 20 5 23 23 C 1.38485 * 119.97177 * 0.02562 * 22 21 20 24 24 F 1.35093 * 120.02684 * 180.25338 * 23 22 21 25 25 C 1.38445 * 119.94716 * 359.97438 * 23 22 21 26 26 C 1.50694 * 120.00973 * 179.97438 * 25 23 22 27 27 C 1.38218 * 119.97632 * 359.97438 * 25 23 22 28 28 H 1.09002 * 109.46663 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46993 * 299.99384 * 1 2 3 30 30 H 1.09001 * 109.47023 * 59.99856 * 1 2 3 31 31 H 0.97000 * 119.99539 * 264.99923 * 7 5 3 32 32 H 1.09010 * 109.46508 * 299.99509 * 10 8 7 33 33 H 1.08992 * 109.47377 * 59.99203 * 10 8 7 34 34 H 0.97003 * 119.99433 * 180.02562 * 15 14 12 35 35 H 1.08000 * 119.98569 * 0.02562 * 21 20 5 36 36 H 1.08000 * 120.01901 * 180.02562 * 22 21 20 37 37 H 1.09003 * 109.47584 * 89.99775 * 26 25 23 38 38 H 1.09004 * 109.47177 * 209.99980 * 26 25 23 39 39 H 1.09004 * 109.47536 * 329.99440 * 26 25 23 40 40 H 1.07992 * 119.98884 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9563 0.7806 0.8891 7 7 3.9816 2.6798 0.0002 8 6 4.0757 3.3542 1.1633 9 8 3.8160 2.7980 2.2093 10 6 4.5023 4.7995 1.1640 11 16 4.5309 5.4193 2.8643 12 6 5.0479 7.0789 2.5763 13 1 5.2401 7.4176 1.5689 14 6 5.2081 7.9512 3.6441 15 7 4.9733 7.5385 4.8718 16 14 5.7568 9.7104 3.3388 17 1 4.7696 10.3921 2.4638 18 1 5.8508 10.4313 4.6337 19 1 7.0858 9.7065 2.6763 20 6 4.1046 0.5921 -1.2314 21 6 4.1032 1.2543 -2.4452 22 6 4.5961 0.6290 -3.5745 23 6 5.0911 -0.6616 -3.4905 24 9 5.5780 -1.2720 -4.5929 25 6 5.0920 -1.3236 -2.2746 26 6 5.6298 -2.7283 -2.1816 27 6 4.5994 -0.6958 -1.1460 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 4.1890 3.1246 -0.8365 32 1 5.4983 4.8844 0.7291 33 1 3.7976 5.3867 0.5754 34 1 5.0849 8.1482 5.6180 35 1 3.7168 2.2606 -2.5106 36 1 4.5953 1.1466 -4.5225 37 1 6.6960 -2.6951 -1.9574 38 1 5.1084 -3.2652 -1.3891 39 1 5.4739 -3.2407 -3.1310 40 1 4.6004 -1.2118 -0.1974 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183797697.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:17 Heat of formation + Delta-G solvation = -139.876893 kcal Electronic energy + Delta-G solvation = -26513.526856 eV Core-core repulsion = 22334.406795 eV Total energy + Delta-G solvation = -4179.120061 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.27702 -41.09503 -39.60538 -38.97159 -36.60421 -35.13078 -33.09478 -32.43017 -31.87448 -29.45817 -28.36670 -27.42972 -26.32031 -25.43982 -23.23071 -22.15990 -21.09192 -20.28887 -18.15745 -17.96535 -17.81224 -17.16096 -17.01849 -16.71544 -16.23272 -16.04343 -15.83783 -15.02051 -14.80403 -14.75976 -14.28297 -14.02483 -13.95394 -13.74572 -13.67046 -13.50602 -13.29755 -13.18932 -12.62407 -12.55706 -12.44194 -12.18175 -11.97814 -11.93510 -11.40989 -11.05168 -11.03634 -10.93084 -10.81906 -10.77685 -9.84358 -9.64515 -9.37637 -9.26817 -9.05490 -8.95131 -8.25925 -6.50660 -6.21726 -3.92460 0.58870 0.77727 2.05835 2.26679 2.85016 3.06371 3.17344 3.24001 3.28367 3.33155 3.64909 3.82108 4.01372 4.20042 4.21935 4.34523 4.65311 4.71371 4.79667 4.86563 4.94552 5.03665 5.10579 5.13529 5.19486 5.20967 5.34387 5.35424 5.50647 5.61965 5.64606 5.70221 5.83506 5.85900 5.92772 6.10527 6.17071 6.28134 6.41989 7.44345 7.59477 7.60187 8.34922 8.41672 9.23496 10.85699 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.014659 B = 0.002554 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.688739 B =10960.894024 C =12019.384635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.356 6.356 3 C 0.451 3.549 4 O -0.485 6.485 5 C 0.205 3.795 6 H 0.137 0.863 7 N -0.717 5.717 8 C 0.542 3.458 9 O -0.510 6.510 10 C -0.152 4.152 11 S -0.057 6.057 12 C -0.536 4.536 13 H 0.073 0.927 14 C 0.074 3.926 15 N -0.868 5.868 16 Si 0.919 3.081 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.274 1.274 20 C -0.099 4.099 21 C -0.085 4.085 22 C -0.144 4.144 23 C 0.103 3.897 24 F -0.136 7.136 25 C -0.115 4.115 26 C -0.115 4.115 27 C -0.061 4.061 28 H 0.101 0.899 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.405 0.595 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.269 0.731 35 H 0.135 0.865 36 H 0.140 0.860 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.359 -20.510 -17.971 27.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.272 6.272 3 C 0.291 3.709 4 O -0.370 6.370 5 C 0.097 3.903 6 H 0.154 0.846 7 N -0.374 5.374 8 C 0.329 3.671 9 O -0.383 6.383 10 C -0.302 4.302 11 S 0.170 5.830 12 C -0.684 4.684 13 H 0.091 0.909 14 C -0.136 4.136 15 N -0.503 5.503 16 Si 0.746 3.254 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.199 1.199 20 C -0.100 4.100 21 C -0.103 4.103 22 C -0.163 4.163 23 C 0.084 3.916 24 F -0.115 7.115 25 C -0.116 4.116 26 C -0.172 4.172 27 C -0.080 4.080 28 H 0.119 0.881 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.242 0.758 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.079 0.921 35 H 0.153 0.847 36 H 0.158 0.842 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.020 -21.092 -16.038 26.669 hybrid contribution 0.464 2.063 -2.034 2.934 sum -2.556 -19.030 -18.072 26.368 Atomic orbital electron populations 1.23275 0.76247 1.03603 1.02707 1.86481 1.23448 1.33107 1.84173 1.24155 0.92099 0.81844 0.72849 1.90714 1.66349 1.36275 1.43652 1.19006 0.86900 0.85127 0.99271 0.84553 1.45879 1.70858 1.10027 1.10594 1.20429 0.75581 0.88432 0.82640 1.90712 1.47296 1.69195 1.31090 1.23514 1.04225 0.93525 1.08943 1.85399 1.89140 1.10989 0.97492 1.22825 1.53130 0.96482 0.95997 0.90900 1.24992 0.94923 0.99226 0.94420 1.70007 1.45729 1.36124 0.98439 0.86214 0.79178 0.82370 0.77684 1.19936 1.20815 1.19915 1.19478 1.01765 0.95299 0.93483 1.20831 0.98138 1.00173 0.91172 1.21081 1.01242 0.93737 1.00235 1.17603 0.99216 0.91966 0.82802 1.91492 1.85496 1.82947 1.51565 1.19922 1.01838 0.98015 0.91839 1.20754 1.01555 0.91371 1.03501 1.20783 0.95549 0.93260 0.98392 0.88069 0.91649 0.92015 0.75847 0.88851 0.88790 0.92112 0.84732 0.84193 0.90484 0.90536 0.91098 0.84030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.15 10.48 -39.25 -0.41 -4.57 16 3 C 0.45 6.24 7.27 36.01 0.26 6.50 16 4 O -0.48 -8.29 16.07 -18.75 -0.30 -8.59 16 5 C 0.21 2.48 2.68 -70.23 -0.19 2.29 16 6 H 0.14 1.66 7.44 -51.93 -0.39 1.28 16 7 N -0.72 -9.74 4.56 -56.06 -0.26 -10.00 16 8 C 0.54 10.10 7.68 -10.99 -0.08 10.02 16 9 O -0.51 -11.38 15.52 5.55 0.09 -11.29 16 10 C -0.15 -3.05 6.16 36.00 0.22 -2.83 16 11 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 12 C -0.54 -15.25 9.50 30.94 0.29 -14.96 16 13 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 14 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 15 N -0.87 -26.18 13.22 55.49 0.73 -25.45 16 16 Si 0.92 21.42 29.55 -169.99 -5.02 16.39 16 17 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 20 C -0.10 -0.93 4.88 -104.62 -0.51 -1.44 16 21 C -0.08 -0.72 9.05 -39.60 -0.36 -1.08 16 22 C -0.14 -1.15 10.03 -39.51 -0.40 -1.55 16 23 C 0.10 0.91 7.24 -39.41 -0.29 0.62 16 24 F -0.14 -1.27 16.48 2.25 0.04 -1.23 16 25 C -0.12 -0.93 5.89 -104.56 -0.62 -1.54 16 26 C -0.12 -0.69 9.83 36.00 0.35 -0.34 16 27 C -0.06 -0.50 9.32 -39.59 -0.37 -0.87 16 28 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 30 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 31 H 0.41 4.32 6.87 -40.82 -0.28 4.04 16 32 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 33 H 0.09 1.79 8.14 -51.92 -0.42 1.36 16 34 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.13 0.99 6.92 -52.49 -0.36 0.62 16 36 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.36 8.09 -51.93 -0.42 -0.06 16 39 H 0.07 0.42 7.64 -51.93 -0.40 0.02 16 40 H 0.14 0.92 8.03 -52.49 -0.42 0.50 16 LS Contribution 371.35 15.07 5.60 5.60 Total: -1.00 -36.42 371.35 -7.23 -43.64 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -4.77 Total: 1.03 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -0.71 Total: -1.78 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: 0.48 Total: -35.44 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.63 Total: -24.45 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.04 Total: -1.23 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.42 -7.23 -43.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183797697.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.234 kcal (2) G-P(sol) polarization free energy of solvation -36.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds