Wall clock time and date at job start Sat Apr 11 2020 06:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34227 * 116.99810 * 2 1 4 4 O 1.20828 * 119.99959 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99845 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.46958 * 299.99816 * 5 3 2 7 7 N 1.46505 * 109.46925 * 180.02562 * 5 3 2 8 8 C 1.34774 * 120.00336 * 85.00158 * 7 5 3 9 9 O 1.21287 * 119.99570 * 359.97438 * 8 7 5 10 10 C 1.50696 * 120.00452 * 180.02562 * 8 7 5 11 11 S 1.80995 * 109.47362 * 179.97438 * 10 8 7 12 12 C 1.76196 * 99.99989 * 179.97438 * 11 10 8 13 13 H 1.08004 * 120.00238 * 359.97438 * 12 11 10 14 14 C 1.38809 * 119.99980 * 179.97438 * 12 11 10 15 15 N 1.31628 * 119.99672 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 119.99926 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47322 * 60.00020 * 16 14 12 18 18 H 1.48499 * 109.47148 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47484 * 300.00110 * 16 14 12 20 20 C 1.50701 * 109.47196 * 60.00402 * 5 3 2 21 21 C 1.38263 * 119.97594 * 79.97591 * 20 5 3 22 22 C 1.38176 * 120.02823 * 180.02562 * 21 20 5 23 23 C 1.38485 * 119.97177 * 0.02562 * 22 21 20 24 24 F 1.35093 * 120.02684 * 180.25338 * 23 22 21 25 25 C 1.38445 * 119.94716 * 359.97438 * 23 22 21 26 26 C 1.50694 * 120.00973 * 179.97438 * 25 23 22 27 27 C 1.38218 * 119.97632 * 359.97438 * 25 23 22 28 28 H 1.09002 * 109.46663 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46993 * 299.99384 * 1 2 3 30 30 H 1.09001 * 109.47023 * 59.99856 * 1 2 3 31 31 H 0.97000 * 119.99539 * 264.99923 * 7 5 3 32 32 H 1.09010 * 109.46508 * 299.99509 * 10 8 7 33 33 H 1.08992 * 109.47377 * 59.99203 * 10 8 7 34 34 H 0.97003 * 119.99433 * 180.02562 * 15 14 12 35 35 H 1.08000 * 119.98569 * 0.02562 * 21 20 5 36 36 H 1.08000 * 120.01901 * 180.02562 * 22 21 20 37 37 H 1.09003 * 109.47584 * 89.99775 * 26 25 23 38 38 H 1.09004 * 109.47177 * 209.99980 * 26 25 23 39 39 H 1.09004 * 109.47536 * 329.99440 * 26 25 23 40 40 H 1.07992 * 119.98884 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9563 0.7806 0.8891 7 7 3.9816 2.6798 0.0002 8 6 4.0757 3.3542 1.1633 9 8 3.8160 2.7980 2.2093 10 6 4.5023 4.7995 1.1640 11 16 4.5309 5.4193 2.8643 12 6 5.0479 7.0789 2.5763 13 1 5.2401 7.4176 1.5689 14 6 5.2081 7.9512 3.6441 15 7 4.9733 7.5385 4.8718 16 14 5.7568 9.7104 3.3388 17 1 4.7696 10.3921 2.4638 18 1 5.8508 10.4313 4.6337 19 1 7.0858 9.7065 2.6763 20 6 4.1046 0.5921 -1.2314 21 6 4.1032 1.2543 -2.4452 22 6 4.5961 0.6290 -3.5745 23 6 5.0911 -0.6616 -3.4905 24 9 5.5780 -1.2720 -4.5929 25 6 5.0920 -1.3236 -2.2746 26 6 5.6298 -2.7283 -2.1816 27 6 4.5994 -0.6958 -1.1460 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 4.1890 3.1246 -0.8365 32 1 5.4983 4.8844 0.7291 33 1 3.7976 5.3867 0.5754 34 1 5.0849 8.1482 5.6180 35 1 3.7168 2.2606 -2.5106 36 1 4.5953 1.1466 -4.5225 37 1 6.6960 -2.6951 -1.9574 38 1 5.1084 -3.2652 -1.3891 39 1 5.4739 -3.2407 -3.1310 40 1 4.6004 -1.2118 -0.1974 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183797697.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:16 Heat of formation + Delta-G solvation = -163.090296 kcal Electronic energy + Delta-G solvation = -26514.533465 eV Core-core repulsion = 22334.406795 eV Total energy + Delta-G solvation = -4180.126670 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.95446 -42.14467 -40.59278 -40.09768 -37.68471 -36.25638 -34.58256 -33.77890 -32.90172 -30.75040 -29.29642 -28.01833 -27.71521 -27.14778 -23.92625 -22.99757 -22.23016 -21.39364 -19.94064 -18.92944 -18.66552 -18.29580 -18.21350 -17.58468 -17.40064 -16.93449 -16.87391 -16.71186 -16.29518 -15.92375 -15.60468 -15.15266 -14.81882 -14.69308 -14.52617 -14.31986 -14.25750 -14.22198 -14.07297 -13.61587 -13.22064 -13.17165 -13.13854 -12.86831 -12.85520 -12.71746 -12.57893 -12.01920 -11.94851 -11.87058 -11.75909 -11.18496 -11.12607 -10.54184 -10.29763 -9.96553 -9.65089 -8.66876 -8.34419 -6.12472 -0.10548 0.16445 0.98433 1.09749 1.31146 1.44408 1.46040 1.54940 1.74665 2.11872 2.27291 2.54153 2.99845 3.11233 3.24713 3.29551 3.58692 3.70108 3.79207 3.82919 3.99069 4.16190 4.25965 4.27680 4.28119 4.30683 4.48370 4.58084 4.65658 4.75019 4.78441 4.87986 5.00378 5.07296 5.18113 5.22376 5.26370 5.31135 5.42230 5.79367 6.19873 6.23487 6.54967 7.02438 7.06898 8.74612 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.014659 B = 0.002554 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.688739 B =10960.894024 C =12019.384635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.352 6.352 3 C 0.452 3.548 4 O -0.525 6.525 5 C 0.207 3.793 6 H 0.136 0.864 7 N -0.696 5.696 8 C 0.546 3.454 9 O -0.553 6.553 10 C -0.129 4.129 11 S -0.146 6.146 12 C -0.547 4.547 13 H 0.084 0.916 14 C 0.013 3.987 15 N -0.911 5.911 16 Si 0.998 3.002 17 H -0.264 1.264 18 H -0.279 1.279 19 H -0.260 1.260 20 C -0.106 4.106 21 C -0.088 4.088 22 C -0.143 4.143 23 C 0.092 3.908 24 F -0.141 7.141 25 C -0.117 4.117 26 C -0.116 4.116 27 C -0.062 4.062 28 H 0.138 0.862 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.421 0.579 32 H 0.119 0.881 33 H 0.108 0.892 34 H 0.271 0.729 35 H 0.145 0.855 36 H 0.158 0.842 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.787 -20.863 -20.238 29.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.267 6.267 3 C 0.294 3.706 4 O -0.413 6.413 5 C 0.100 3.900 6 H 0.154 0.846 7 N -0.352 5.352 8 C 0.332 3.668 9 O -0.430 6.430 10 C -0.280 4.280 11 S 0.081 5.919 12 C -0.695 4.695 13 H 0.102 0.898 14 C -0.191 4.191 15 N -0.548 5.548 16 Si 0.820 3.180 17 H -0.188 1.188 18 H -0.204 1.204 19 H -0.185 1.185 20 C -0.107 4.107 21 C -0.106 4.106 22 C -0.161 4.161 23 C 0.072 3.928 24 F -0.120 7.120 25 C -0.118 4.118 26 C -0.172 4.172 27 C -0.080 4.080 28 H 0.156 0.844 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.260 0.740 32 H 0.137 0.863 33 H 0.126 0.874 34 H 0.080 0.920 35 H 0.162 0.838 36 H 0.176 0.824 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.089 0.911 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -2.444 -21.487 -18.370 28.374 hybrid contribution 0.226 1.997 -1.441 2.473 sum -2.218 -19.490 -19.811 27.879 Atomic orbital electron populations 1.23578 0.74706 1.05945 1.02287 1.86475 1.24930 1.31820 1.83467 1.24433 0.92665 0.81850 0.71696 1.90699 1.67305 1.37525 1.45761 1.19101 0.86181 0.83948 1.00803 0.84638 1.45559 1.69196 1.10721 1.09703 1.20134 0.75352 0.87939 0.83332 1.90699 1.49518 1.69865 1.32927 1.23351 1.06256 0.94594 1.03848 1.85558 1.89536 1.12224 1.04551 1.23179 1.53003 0.96631 0.96689 0.89796 1.26128 0.94710 1.04317 0.93976 1.70175 1.47037 1.37960 0.99592 0.85003 0.79233 0.75939 0.77824 1.18822 1.20417 1.18479 1.19307 1.02988 0.95862 0.92533 1.20949 0.98108 1.00664 0.90922 1.21261 1.00495 0.93540 1.00818 1.17843 0.99518 0.92428 0.82970 1.91481 1.85606 1.83066 1.51822 1.20139 1.01327 0.98861 0.91425 1.20821 1.02034 0.90282 1.04103 1.20950 0.94969 0.92833 0.99225 0.84357 0.92855 0.91719 0.73965 0.86298 0.87356 0.91978 0.83766 0.82425 0.89843 0.89136 0.91061 0.82504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 113.37 1.20 1.67 16 2 O -0.35 -7.81 10.48 -51.39 -0.54 -8.35 16 3 C 0.45 12.26 7.27 71.24 0.52 12.77 16 4 O -0.52 -17.95 16.07 21.96 0.35 -17.60 16 5 C 0.21 4.81 2.68 43.50 0.12 4.93 16 6 H 0.14 3.23 7.44 -2.39 -0.02 3.22 16 7 N -0.70 -18.13 4.56 -449.68 -2.05 -20.18 16 8 C 0.55 20.22 7.68 87.66 0.67 20.89 16 9 O -0.55 -25.24 15.52 -3.05 -0.05 -25.29 16 10 C -0.13 -5.14 6.16 71.23 0.44 -4.71 16 11 S -0.15 -8.11 20.57 -56.49 -1.16 -9.27 16 12 C -0.55 -31.25 9.50 67.96 0.65 -30.60 16 13 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 14 C 0.01 0.77 5.49 84.86 0.47 1.24 16 15 N -0.91 -56.09 13.22 21.65 0.29 -55.81 16 16 Si 1.00 43.61 29.55 68.60 2.03 45.64 16 17 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 18 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 19 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 20 C -0.11 -1.81 4.88 -19.86 -0.10 -1.91 16 21 C -0.09 -1.31 9.05 22.26 0.20 -1.11 16 22 C -0.14 -1.97 10.03 22.31 0.22 -1.75 16 23 C 0.09 1.43 7.24 22.38 0.16 1.59 16 24 F -0.14 -2.39 16.48 44.97 0.74 -1.65 16 25 C -0.12 -1.64 5.89 -19.82 -0.12 -1.75 16 26 C -0.12 -1.14 9.83 71.23 0.70 -0.44 16 27 C -0.06 -0.89 9.32 22.26 0.21 -0.68 16 28 H 0.14 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.05 1.05 8.13 -2.39 -0.02 1.03 16 30 H 0.06 1.07 8.13 -2.39 -0.02 1.05 16 31 H 0.42 8.18 6.87 -92.71 -0.64 7.54 16 32 H 0.12 4.10 8.14 -2.39 -0.02 4.08 16 33 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 34 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 35 H 0.14 1.80 6.92 -2.91 -0.02 1.78 16 36 H 0.16 1.55 8.06 -2.91 -0.02 1.52 16 37 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.09 0.63 8.09 -2.38 -0.02 0.61 16 39 H 0.07 0.71 7.64 -2.38 -0.02 0.69 16 40 H 0.16 1.70 8.03 -2.91 -0.02 1.68 16 Total: -1.00 -80.91 371.35 5.40 -75.51 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.45 Total: 16.84 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: 5.34 Total: 0.15 kcal Atomic # 7 Polarization: -74.22 SS G_CDS: -1.76 Total: -75.99 kcal Atomic # 8 Polarization: -51.01 SS G_CDS: -0.23 Total: -51.24 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.74 Total: -1.65 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -8.11 SS G_CDS: -1.16 Total: -9.27 kcal Total: -80.91 5.40 -75.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183797697.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.581 kcal (2) G-P(sol) polarization free energy of solvation -80.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds