Wall clock time and date at job start Sat Apr 11 2020 06:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86804 * 120.00075 * 2 1 4 4 H 1.48504 * 109.47223 * 240.00090 * 3 2 1 5 5 H 1.48500 * 109.46822 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47235 * 119.99913 * 3 2 1 7 7 C 1.38806 * 120.00505 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00071 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99444 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99745 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47017 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47127 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.47006 * 179.97438 * 12 11 10 14 14 C 1.45319 * 110.99793 * 169.99534 * 13 12 11 15 15 C 1.51409 * 116.32862 * 198.90203 * 14 13 12 16 16 S 1.82401 * 109.39204 * 291.59666 * 15 14 13 17 17 O 1.42100 * 110.85439 * 190.06651 * 16 15 14 18 18 O 1.42101 * 110.85397 * 327.90114 * 16 15 14 19 19 C 1.77500 * 102.24737 * 78.98617 * 16 15 14 20 20 C 1.37834 * 120.35053 * 114.47580 * 19 16 15 21 21 C 1.38503 * 119.24245 * 179.69092 * 20 19 16 22 22 C 1.38255 * 119.80424 * 359.97438 * 21 20 19 23 23 C 1.38223 * 120.43099 * 0.11084 * 22 21 20 24 24 C 1.37146 * 118.27213 * 294.42588 * 19 16 15 25 25 C 1.46908 * 111.00077 * 296.86827 * 13 12 11 26 26 H 0.96998 * 120.00447 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47543 * 60.00137 * 10 9 7 28 28 H 1.09001 * 109.47021 * 299.99641 * 10 9 7 29 29 H 1.09001 * 109.47502 * 60.00112 * 11 10 9 30 30 H 1.09001 * 109.47289 * 299.99908 * 11 10 9 31 31 H 1.09001 * 109.47002 * 299.99574 * 12 11 10 32 32 H 1.08993 * 109.46955 * 60.00011 * 12 11 10 33 33 H 1.09002 * 108.08711 * 320.63029 * 14 13 12 34 34 H 1.09005 * 108.08264 * 77.21800 * 14 13 12 35 35 H 1.08999 * 109.49043 * 51.57197 * 15 14 13 36 36 H 1.09007 * 109.48644 * 171.62241 * 15 14 13 37 37 H 1.07992 * 120.37615 * 359.72592 * 20 19 16 38 38 H 1.08002 * 120.09995 * 179.97438 * 21 20 19 39 39 H 1.08005 * 119.78495 * 180.12909 * 22 21 20 40 40 H 1.08000 * 120.15397 * 180.02562 * 23 22 21 41 41 H 1.09007 * 109.54530 * 261.01947 * 25 13 12 42 42 H 1.08994 * 109.55288 * 21.30388 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9794 -5.3242 -0.0012 12 6 3.1515 -6.3077 -0.0018 13 7 2.6364 -7.6834 -0.0018 14 6 3.7049 -8.6395 -0.2381 15 6 3.2824 -10.0181 -0.7001 16 16 2.4123 -10.8714 0.6571 17 8 2.2056 -12.2417 0.3429 18 8 2.9285 -10.4716 1.9192 19 6 0.7946 -10.1448 0.5829 20 6 -0.2990 -10.9126 0.2449 21 6 -1.5517 -10.3235 0.2003 22 6 -1.6899 -8.9796 0.4942 23 6 -0.5855 -8.2193 0.8302 24 6 0.6683 -8.8097 0.8705 25 6 1.8718 -7.9593 1.2219 26 1 -0.4851 0.8400 -0.0004 27 1 3.1245 -3.7314 0.8894 28 1 3.1245 -3.7313 -0.8906 29 1 1.3711 -5.4840 -0.8914 30 1 1.3706 -5.4846 0.8886 31 1 3.7600 -6.1472 -0.8919 32 1 3.7602 -6.1480 0.8881 33 1 4.3735 -8.2208 -0.9904 34 1 4.2693 -8.7518 0.6876 35 1 2.6161 -9.9259 -1.5578 36 1 4.1642 -10.5924 -0.9845 37 1 -0.1805 -11.9618 0.0180 38 1 -2.4180 -10.9121 -0.0633 39 1 -2.6672 -8.5210 0.4614 40 1 -0.6987 -7.1700 1.0594 41 1 2.5016 -8.4945 1.9326 42 1 1.5384 -7.0201 1.6632 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186525682.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:19 Heat of formation + Delta-G solvation = -59.522833 kcal Electronic energy + Delta-G solvation = -25042.601978 eV Core-core repulsion = 21433.179506 eV Total energy + Delta-G solvation = -3609.422471 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.75267 -39.12424 -38.05345 -37.06697 -34.90411 -34.56901 -33.26658 -32.17612 -31.48291 -27.93529 -27.52364 -26.12456 -24.21854 -23.31057 -22.62288 -21.58055 -19.98038 -19.53886 -18.78863 -17.99573 -17.11482 -16.95141 -16.88203 -16.65428 -16.46790 -16.00905 -15.78992 -15.70584 -15.31686 -15.10532 -14.70123 -14.22295 -14.10562 -13.70351 -13.59314 -13.39931 -13.35223 -13.22191 -13.07264 -13.06655 -12.99682 -12.85646 -12.62604 -12.45882 -12.35568 -12.13653 -11.71696 -11.47193 -11.38141 -11.30701 -11.11668 -10.29119 -10.27731 -9.83324 -9.37481 -8.63820 -8.36155 -6.11455 -0.93021 -0.08215 0.31154 1.32171 1.41029 1.47977 1.74389 1.76584 2.29479 2.41973 2.63650 2.87397 2.98218 3.19280 3.34466 3.57132 3.73208 3.78728 3.95391 4.02971 4.08381 4.10870 4.25611 4.33612 4.34785 4.41962 4.49853 4.54158 4.63857 4.74885 4.78697 4.84317 4.88334 4.88813 4.97741 5.16478 5.23061 5.33563 5.36849 5.41022 5.46315 5.84687 5.93572 6.02573 6.19109 7.06418 8.72798 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.020736 B = 0.002500 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.978333 B =11197.221087 C =12228.083970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.015 3.985 3 Si 0.991 3.009 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.538 4.538 8 H 0.073 0.927 9 S -0.197 6.197 10 C -0.089 4.089 11 C -0.087 4.087 12 C 0.076 3.924 13 N -0.553 5.553 14 C 0.054 3.946 15 C -0.559 4.559 16 S 2.474 3.526 17 O -0.968 6.968 18 O -0.965 6.965 19 C -0.645 4.645 20 C -0.041 4.041 21 C -0.142 4.142 22 C -0.074 4.074 23 C -0.141 4.141 24 C 0.011 3.989 25 C 0.036 3.964 26 H 0.271 0.729 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.049 0.951 33 H 0.122 0.878 34 H 0.057 0.943 35 H 0.161 0.839 36 H 0.181 0.819 37 H 0.153 0.847 38 H 0.157 0.843 39 H 0.148 0.852 40 H 0.131 0.869 41 H 0.093 0.907 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.642 -23.260 -1.976 23.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.190 4.190 3 Si 0.813 3.187 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.686 4.686 8 H 0.091 0.909 9 S 0.032 5.968 10 C -0.238 4.238 11 C -0.126 4.126 12 C -0.052 4.052 13 N -0.277 5.277 14 C -0.074 4.074 15 C -0.692 4.692 16 S 2.659 3.341 17 O -0.965 6.965 18 O -0.962 6.962 19 C -0.733 4.733 20 C -0.059 4.059 21 C -0.161 4.161 22 C -0.091 4.091 23 C -0.161 4.161 24 C 0.009 3.991 25 C -0.091 4.091 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.116 0.884 32 H 0.067 0.933 33 H 0.140 0.860 34 H 0.075 0.925 35 H 0.179 0.821 36 H 0.199 0.801 37 H 0.170 0.830 38 H 0.175 0.825 39 H 0.166 0.834 40 H 0.149 0.851 41 H 0.111 0.889 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.365 -24.050 -1.733 24.346 hybrid contribution 1.326 2.073 0.305 2.479 sum 4.691 -21.977 -1.428 22.518 Atomic orbital electron populations 1.70140 1.07660 1.28542 1.48065 1.26041 0.95998 1.03055 0.93865 0.85106 0.77966 0.76265 0.79346 1.18895 1.20141 1.18983 1.23021 0.94759 0.92094 1.58708 0.90864 1.84627 1.14125 1.01059 1.97031 1.23157 1.00145 0.97376 1.03121 1.21264 0.98120 0.90334 1.02845 1.22059 0.95734 0.84753 1.02654 1.60206 1.27435 1.03389 1.36692 1.21169 0.92987 0.89996 1.03290 1.29781 1.15689 1.06905 1.16860 1.06085 0.75767 0.74659 0.77582 1.93518 1.85230 1.31755 1.86000 1.93517 1.79273 1.83680 1.39779 1.29751 1.21973 1.04013 1.17521 1.21148 0.91857 1.00042 0.92877 1.21689 0.98137 0.95383 1.00873 1.21765 0.99562 0.94371 0.93444 1.21587 0.92634 1.00763 1.01066 1.19566 0.95770 0.91592 0.92186 1.22093 0.93694 1.01202 0.92088 0.92029 0.91901 0.91564 0.91373 0.91751 0.88416 0.93320 0.86029 0.92501 0.82097 0.80146 0.82960 0.82522 0.83397 0.85075 0.88903 0.88212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.23 13.22 21.65 0.29 -53.94 16 2 C 0.02 0.86 5.49 84.86 0.47 1.33 16 3 Si 0.99 43.27 29.55 68.60 2.03 45.30 16 4 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 5 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 6 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 7 C -0.54 -30.45 9.50 67.96 0.65 -29.81 16 8 H 0.07 3.97 7.80 -2.91 -0.02 3.95 16 9 S -0.20 -10.16 21.44 -56.49 -1.21 -11.37 16 10 C -0.09 -3.30 5.67 71.98 0.41 -2.89 16 11 C -0.09 -2.51 5.15 30.60 0.16 -2.35 16 12 C 0.08 1.61 4.89 86.31 0.42 2.03 16 13 N -0.55 -10.76 4.32 -906.61 -3.92 -14.68 16 14 C 0.05 0.75 4.77 86.08 0.41 1.16 16 15 C -0.56 -5.87 6.44 71.46 0.46 -5.41 16 16 S 2.47 46.67 5.32 -56.49 -0.30 46.37 16 17 O -0.97 -22.46 16.88 -127.71 -2.16 -24.62 16 18 O -0.97 -23.90 14.57 -127.71 -1.86 -25.76 16 19 C -0.64 -13.67 5.52 21.92 0.12 -13.55 16 20 C -0.04 -0.78 9.56 22.24 0.21 -0.57 16 21 C -0.14 -2.43 10.07 22.34 0.22 -2.20 16 22 C -0.07 -1.39 10.02 22.27 0.22 -1.16 16 23 C -0.14 -3.18 9.67 22.37 0.22 -2.96 16 24 C 0.01 0.25 5.40 -19.77 -0.11 0.14 16 25 C 0.04 0.81 4.87 85.81 0.42 1.22 16 26 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 27 H 0.06 2.30 8.14 -2.40 -0.02 2.28 16 28 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.06 1.90 6.19 -2.39 -0.01 1.88 16 31 H 0.10 1.77 7.76 -2.39 -0.02 1.75 16 32 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.12 1.14 7.60 -2.39 -0.02 1.12 16 34 H 0.06 0.78 7.18 -2.38 -0.02 0.76 16 35 H 0.16 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.18 0.58 8.14 -2.38 -0.02 0.56 16 37 H 0.15 2.51 7.31 -2.91 -0.02 2.49 16 38 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 39 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 40 H 0.13 2.94 7.98 -2.91 -0.02 2.92 16 41 H 0.09 2.12 5.02 -2.38 -0.01 2.11 16 42 H 0.10 2.29 5.47 -2.39 -0.01 2.28 16 Total: -1.00 -76.64 359.23 -1.83 -78.47 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 1.03 Total: 15.26 kcal Atomic # 6 Polarization: -59.31 SS G_CDS: 4.28 Total: -55.03 kcal Atomic # 7 Polarization: -64.99 SS G_CDS: -3.63 Total: -68.62 kcal Atomic # 8 Polarization: -46.36 SS G_CDS: -4.02 Total: -50.38 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: 36.51 SS G_CDS: -1.51 Total: 35.00 kcal Total: -76.64 -1.83 -78.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186525682.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.945 kcal (2) G-P(sol) polarization free energy of solvation -76.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds