Wall clock time and date at job start Sat Apr 11 2020 06:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81404 * 103.00138 * 2 1 4 4 C 1.52997 * 109.47464 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46952 * 54.99666 * 4 3 2 6 6 O 1.42907 * 109.46738 * 295.00051 * 4 3 2 7 7 C 1.52992 * 109.47317 * 175.00259 * 4 3 2 8 8 N 1.46497 * 109.47339 * 184.99990 * 7 4 3 9 9 C 1.34780 * 120.00366 * 179.97438 * 8 7 4 10 10 O 1.21604 * 119.99709 * 0.02562 * 9 8 7 11 11 C 1.47429 * 119.99956 * 180.02562 * 9 8 7 12 12 C 1.39672 * 120.21756 * 0.25452 * 11 9 8 13 13 C 1.37810 * 119.93747 * 180.27711 * 12 11 9 14 14 C 1.38652 * 120.38325 * 359.72378 * 13 12 11 15 15 C 1.37911 * 120.43793 * 0.02562 * 14 13 12 16 16 C 1.39120 * 120.05120 * 359.97438 * 15 14 13 17 17 S 1.76194 * 120.18970 * 179.97438 * 16 15 14 18 18 C 1.76194 * 100.00243 * 353.15621 * 17 16 15 19 19 H 1.08003 * 119.99769 * 354.34370 * 18 17 16 20 20 C 1.38811 * 120.00344 * 174.35186 * 18 17 16 21 21 N 1.31553 * 119.99502 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00309 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47255 * 59.99377 * 22 20 18 24 24 H 1.48496 * 109.47236 * 179.97438 * 22 20 18 25 25 H 1.48508 * 109.46804 * 299.99693 * 22 20 18 26 26 H 1.09001 * 109.47183 * 60.00110 * 1 2 3 27 27 H 1.08998 * 109.47436 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47454 * 300.00387 * 1 2 3 29 29 H 1.09010 * 109.46758 * 59.99791 * 3 2 1 30 30 H 1.08999 * 109.47049 * 299.99922 * 3 2 1 31 31 H 1.09003 * 109.46923 * 180.02562 * 5 4 3 32 32 H 1.08998 * 109.47532 * 300.00307 * 5 4 3 33 33 H 1.09005 * 109.46696 * 60.00477 * 5 4 3 34 34 H 0.96693 * 114.00489 * 299.99351 * 6 4 3 35 35 H 1.08998 * 109.47338 * 64.99777 * 7 4 3 36 36 H 1.09003 * 109.47438 * 305.00031 * 7 4 3 37 37 H 0.97001 * 120.00026 * 0.02562 * 8 7 4 38 38 H 1.07999 * 120.03446 * 359.97438 * 12 11 9 39 39 H 1.07999 * 119.80841 * 179.74372 * 13 12 11 40 40 H 1.07997 * 119.78260 * 180.02562 * 14 13 12 41 41 H 1.07999 * 119.98204 * 180.02562 * 15 14 13 42 42 H 0.97004 * 119.99870 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 6 4.3428 1.1752 -1.1806 6 8 4.2792 1.4280 1.2221 7 6 4.0871 3.4253 -0.1250 8 7 5.5388 3.5812 -0.2445 9 6 6.0767 4.8108 -0.3680 10 8 5.3570 5.7909 -0.3798 11 6 7.5377 4.9676 -0.4887 12 6 8.3682 3.8446 -0.4810 13 6 9.7335 3.9982 -0.5885 14 6 10.2895 5.2625 -0.7103 15 6 9.4838 6.3816 -0.7249 16 6 8.1033 6.2476 -0.6175 17 16 7.0705 7.6751 -0.6350 18 6 8.2963 8.9401 -0.5960 19 1 9.3378 8.6794 -0.4788 20 6 7.9234 10.2719 -0.7156 21 7 6.6548 10.5893 -0.8587 22 14 9.2230 11.6130 -0.6749 23 1 10.1818 11.4073 -1.7902 24 1 8.5708 12.9390 -0.8217 25 1 9.9498 11.5589 0.6190 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8030 2.2371 0.8901 30 1 1.8031 2.2371 -0.8900 31 1 5.4259 1.2977 -1.1799 32 1 4.0971 0.1171 -1.0911 33 1 3.9332 1.5658 -2.1122 34 1 3.9419 1.8673 2.0147 35 1 3.7363 3.9559 0.7601 36 1 3.6034 3.8370 -1.0108 37 1 6.1130 2.7994 -0.2354 38 1 7.9412 2.8572 -0.3860 39 1 10.3740 3.1287 -0.5782 40 1 11.3607 5.3715 -0.7944 41 1 9.9248 7.3629 -0.8205 42 1 6.3942 11.5199 -0.9426 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217673503.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:28 Heat of formation + Delta-G solvation = -59.617517 kcal Electronic energy + Delta-G solvation = -24467.045498 eV Core-core repulsion = 20857.618920 eV Total energy + Delta-G solvation = -3609.426577 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.81319 -38.50815 -37.28146 -34.20734 -32.75790 -32.38697 -30.56244 -30.26622 -29.43621 -27.69385 -26.53392 -25.82701 -22.99844 -21.91323 -20.77709 -20.11755 -18.39068 -17.56193 -17.07751 -15.99242 -15.90131 -15.79077 -15.40476 -15.26102 -14.89804 -14.65057 -14.20792 -14.06956 -13.95245 -13.82532 -13.68073 -13.09510 -12.98921 -12.78531 -12.68741 -12.42986 -12.31411 -12.07087 -11.78668 -11.58500 -11.34002 -11.20960 -11.18689 -10.95726 -10.43686 -10.32270 -10.16912 -9.82915 -9.65733 -9.49509 -8.82333 -8.72727 -8.32840 -8.08148 -7.94297 -6.53840 -6.46613 -4.17091 1.27866 1.53319 2.02603 2.24199 3.10293 3.13595 3.17670 3.38209 3.45303 3.50760 3.95902 4.06234 4.32597 4.42327 4.49444 4.50705 4.76946 4.79158 4.94344 4.98881 5.12074 5.13331 5.30377 5.34010 5.39199 5.48787 5.60369 5.63976 5.67203 5.70674 5.96103 6.01140 6.12207 6.39158 6.59784 6.69812 6.85888 7.03081 7.13720 7.35996 7.44389 7.59383 7.88621 8.15498 8.76825 8.99562 10.56661 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.018316 B = 0.002532 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.328709 B =11056.196140 C =12372.210668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 S -0.228 6.228 3 C -0.118 4.118 4 C 0.140 3.860 5 C -0.142 4.142 6 O -0.545 6.545 7 C 0.104 3.896 8 N -0.731 5.731 9 C 0.552 3.448 10 O -0.511 6.511 11 C -0.177 4.177 12 C -0.060 4.060 13 C -0.186 4.186 14 C -0.076 4.076 15 C -0.154 4.154 16 C -0.056 4.056 17 S 0.183 5.817 18 C -0.596 4.596 19 H 0.090 0.910 20 C 0.083 3.917 21 N -0.859 5.859 22 Si 0.919 3.081 23 H -0.270 1.270 24 H -0.280 1.280 25 H -0.270 1.270 26 H 0.075 0.925 27 H 0.100 0.900 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.379 0.621 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.399 0.601 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.139 0.861 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.145 -19.362 1.210 20.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S -0.002 6.002 3 C -0.267 4.267 4 C 0.097 3.903 5 C -0.199 4.199 6 O -0.350 6.350 7 C -0.023 4.023 8 N -0.387 5.387 9 C 0.342 3.658 10 O -0.388 6.388 11 C -0.192 4.192 12 C -0.080 4.080 13 C -0.211 4.211 14 C -0.098 4.098 15 C -0.179 4.179 16 C -0.176 4.176 17 S 0.447 5.553 18 C -0.742 4.742 19 H 0.108 0.892 20 C -0.127 4.127 21 N -0.491 5.491 22 Si 0.744 3.256 23 H -0.195 1.195 24 H -0.206 1.206 25 H -0.195 1.195 26 H 0.094 0.906 27 H 0.119 0.881 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.227 0.773 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.236 0.764 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.156 0.844 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.269 -19.247 0.732 20.961 hybrid contribution 1.203 1.743 0.442 2.163 sum -7.066 -17.504 1.174 18.913 Atomic orbital electron populations 1.23468 0.95534 1.06444 1.04861 1.87060 1.05671 1.09532 1.97954 1.24188 1.00201 0.96179 1.06101 1.21125 0.89210 0.92696 0.87245 1.21808 1.01582 1.01244 0.95289 1.86601 1.70056 1.63462 1.14931 1.21826 0.82923 0.94466 1.03052 1.45734 1.06603 1.08816 1.77535 1.18330 0.88234 0.82522 0.76754 1.90782 1.61752 1.37270 1.49022 1.19075 0.91675 0.93042 1.15422 1.20908 0.93775 0.96224 0.97121 1.20644 0.94516 0.96860 1.09053 1.21089 0.98891 0.92680 0.97189 1.21435 0.92624 0.99637 1.04167 1.23087 0.98305 0.99404 0.96833 1.84723 1.05552 0.88744 1.76238 1.24019 0.97541 0.94434 1.58243 0.89194 1.25097 0.96205 0.98398 0.93050 1.69967 1.15598 1.19732 1.43844 0.86204 0.80689 0.79419 0.79278 1.19481 1.20565 1.19468 0.90575 0.88124 0.90615 0.89458 0.88763 0.91425 0.90434 0.90563 0.77334 0.91211 0.90624 0.76415 0.87158 0.87027 0.86997 0.84381 0.91492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.80 10.76 101.05 1.09 0.29 16 2 S -0.23 -1.94 20.42 -107.50 -2.19 -4.14 16 3 C -0.12 -0.91 5.16 37.16 0.19 -0.72 16 4 C 0.14 1.26 0.75 -90.62 -0.07 1.19 16 5 C -0.14 -1.29 8.30 37.16 0.31 -0.98 16 6 O -0.54 -5.19 12.68 -35.23 -0.45 -5.64 16 7 C 0.10 1.20 4.82 -4.05 -0.02 1.18 16 8 N -0.73 -10.17 5.14 -61.39 -0.32 -10.48 16 9 C 0.55 10.54 7.75 -12.52 -0.10 10.44 16 10 O -0.51 -11.72 13.77 5.27 0.07 -11.65 16 11 C -0.18 -3.49 5.89 -104.75 -0.62 -4.11 16 12 C -0.06 -0.96 9.53 -39.20 -0.37 -1.34 16 13 C -0.19 -2.89 10.02 -39.58 -0.40 -3.28 16 14 C -0.08 -1.31 10.03 -39.55 -0.40 -1.70 16 15 C -0.15 -3.21 9.22 -39.37 -0.36 -3.57 16 16 C -0.06 -1.29 6.15 -38.39 -0.24 -1.52 16 17 S 0.18 4.90 18.56 -107.50 -2.00 2.90 16 18 C -0.60 -16.40 9.00 30.94 0.28 -16.12 16 19 H 0.09 2.34 4.98 -52.48 -0.26 2.08 16 20 C 0.08 2.28 5.49 -17.46 -0.10 2.19 16 21 N -0.86 -24.69 13.22 55.49 0.73 -23.96 16 22 Si 0.92 20.63 29.55 -169.99 -5.02 15.61 16 23 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 26 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 27 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 29 H 0.09 0.59 8.14 -51.92 -0.42 0.17 16 30 H 0.09 0.67 8.14 -51.92 -0.42 0.25 16 31 H 0.07 0.62 6.58 -51.93 -0.34 0.28 16 32 H 0.08 0.73 6.72 -51.93 -0.35 0.38 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.38 2.62 9.04 45.56 0.41 3.03 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.40 4.80 5.02 -40.82 -0.20 4.59 16 38 H 0.11 1.38 6.40 -52.49 -0.34 1.04 16 39 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 40 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.14 3.00 5.04 -52.49 -0.26 2.74 16 42 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 370.86 15.07 5.59 5.59 Total: -1.00 -32.71 370.86 -9.09 -41.79 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -4.71 Total: 8.03 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -0.80 Total: -18.05 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: 0.42 Total: -34.44 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.37 Total: -17.29 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 2.95 SS G_CDS: -4.19 Total: -1.24 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.71 -9.09 -41.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217673503.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.823 kcal (2) G-P(sol) polarization free energy of solvation -32.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds