Wall clock time and date at job start Sat Apr 11 2020 06:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86794 * 120.00111 * 2 1 4 4 H 1.48502 * 109.46991 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47417 * 299.99926 * 3 2 1 6 6 H 1.48506 * 109.47217 * 60.00451 * 3 2 1 7 7 C 1.38804 * 119.99610 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99775 * 180.02562 * 7 2 1 9 9 S 1.76205 * 120.00248 * 359.97438 * 7 2 1 10 10 C 1.76195 * 99.99901 * 185.65626 * 9 7 2 11 11 C 1.39110 * 120.19106 * 6.85682 * 10 9 7 12 12 C 1.37910 * 120.04977 * 180.02562 * 11 10 9 13 13 C 1.38660 * 120.43889 * 359.97438 * 12 11 10 14 14 C 1.37809 * 120.38295 * 0.02562 * 13 12 11 15 15 C 1.39678 * 119.93418 * 0.02562 * 14 13 12 16 16 C 1.47433 * 120.21285 * 180.02562 * 15 14 13 17 17 O 1.21606 * 120.00088 * 179.97438 * 16 15 14 18 18 N 1.34783 * 119.99777 * 359.97438 * 16 15 14 19 19 C 1.46498 * 119.99450 * 179.97438 * 18 16 15 20 20 C 1.53007 * 109.46662 * 180.02562 * 19 18 16 21 21 S 1.81393 * 109.46943 * 180.02562 * 20 19 18 22 22 C 1.81404 * 103.00026 * 179.97438 * 21 20 19 23 23 C 1.52998 * 109.47197 * 179.97438 * 22 21 20 24 24 C 1.52998 * 109.47224 * 180.02562 * 23 22 21 25 25 O 1.42901 * 109.47337 * 180.02562 * 24 23 22 26 26 H 0.96997 * 119.99773 * 359.97438 * 1 2 3 27 27 H 1.07997 * 119.97733 * 359.97438 * 11 10 9 28 28 H 1.08007 * 119.78572 * 179.97438 * 12 11 10 29 29 H 1.08006 * 119.80903 * 180.02562 * 13 12 11 30 30 H 1.07994 * 120.02855 * 179.72374 * 14 13 12 31 31 H 0.97003 * 119.99723 * 0.02562 * 18 16 15 32 32 H 1.09000 * 109.47061 * 299.99762 * 19 18 16 33 33 H 1.09003 * 109.47311 * 60.00209 * 19 18 16 34 34 H 1.09005 * 109.46866 * 300.00049 * 20 19 18 35 35 H 1.08995 * 109.47376 * 59.99831 * 20 19 18 36 36 H 1.08996 * 109.46906 * 300.00058 * 22 21 20 37 37 H 1.09000 * 109.46802 * 59.99881 * 22 21 20 38 38 H 1.09000 * 109.47472 * 300.00576 * 23 22 21 39 39 H 1.09005 * 109.46823 * 59.99979 * 23 22 21 40 40 H 1.09004 * 109.46733 * 300.00109 * 24 23 22 41 41 H 1.09000 * 109.46873 * 60.00265 * 24 23 22 42 42 H 0.96698 * 113.99750 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8909 2.3964 1.2126 7 6 2.0095 -1.2021 -0.0005 8 1 3.0896 -1.2022 -0.0001 9 16 1.1285 -2.7281 -0.0005 10 6 2.4709 -3.8565 0.1697 11 6 3.7583 -3.3824 0.4005 12 6 4.8070 -4.2682 0.5328 13 6 4.5889 -5.6343 0.4379 14 6 3.3210 -6.1235 0.2096 15 6 2.2475 -5.2405 0.0721 16 6 0.8884 -5.7572 -0.1717 17 8 -0.0435 -4.9850 -0.2904 18 7 0.6787 -7.0855 -0.2631 19 6 -0.6719 -7.5989 -0.5048 20 6 -0.6334 -9.1274 -0.5638 21 16 -2.3056 -9.7631 -0.8638 22 6 -2.0585 -11.5598 -0.9011 23 6 -3.3992 -12.2540 -1.1489 24 6 -3.1909 -13.7694 -1.1797 25 8 -4.4431 -14.4178 -1.4118 26 1 -0.4850 0.8400 0.0004 27 1 3.9367 -2.3199 0.4753 28 1 5.8048 -3.8955 0.7115 29 1 5.4176 -6.3189 0.5435 30 1 3.1584 -7.1883 0.1322 31 1 1.4221 -7.7015 -0.1681 32 1 -1.3307 -7.2834 0.3042 33 1 -1.0454 -7.2077 -1.4512 34 1 0.0256 -9.4432 -1.3726 35 1 -0.2601 -9.5182 0.3827 36 1 -1.3637 -11.8145 -1.7013 37 1 -1.6498 -11.8902 0.0539 38 1 -4.0938 -11.9992 -0.3484 39 1 -3.8084 -11.9236 -2.1037 40 1 -2.4963 -14.0245 -1.9800 41 1 -2.7821 -14.0994 -0.2247 42 1 -4.3865 -15.3826 -1.4434 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225845719.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:31 Heat of formation + Delta-G solvation = -68.858621 kcal Electronic energy + Delta-G solvation = -23081.336855 eV Core-core repulsion = 19471.509553 eV Total energy + Delta-G solvation = -3609.827302 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.52581 -37.65267 -37.53174 -35.11818 -33.83943 -32.76008 -31.49127 -30.29604 -29.70793 -26.79208 -25.83463 -24.15845 -22.63837 -21.99778 -21.68866 -20.22282 -18.28455 -17.92434 -17.20603 -16.43143 -16.40447 -15.94803 -15.75866 -15.64452 -15.15828 -14.77151 -14.45227 -14.32142 -13.94184 -13.83823 -13.74008 -13.30803 -13.06677 -12.94837 -12.51352 -12.26522 -12.09895 -11.83867 -11.61411 -11.60050 -11.52515 -11.22598 -11.21862 -10.91997 -10.50101 -10.33297 -10.31354 -9.82322 -9.67516 -9.52049 -8.86184 -8.74798 -8.35929 -8.07877 -7.98516 -6.54983 -6.46760 -4.17564 1.14224 1.50745 1.99623 2.19728 3.10235 3.11780 3.20343 3.40970 3.48953 3.57218 3.69244 4.05895 4.33424 4.46168 4.50151 4.62971 4.63307 4.67346 4.77141 4.94368 4.95301 5.08204 5.11127 5.13367 5.28425 5.36538 5.52034 5.57880 5.66675 5.70063 5.80584 5.97645 6.09439 6.36458 6.56792 6.64689 6.82122 7.00439 7.09440 7.11398 7.43820 7.57418 7.82641 8.15872 8.74247 8.99505 10.56539 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.019260 B = 0.001921 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.451467 B =14568.834599 C =15976.351359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.083 3.917 3 Si 0.920 3.080 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.596 4.596 8 H 0.092 0.908 9 S 0.187 5.813 10 C -0.057 4.057 11 C -0.153 4.153 12 C -0.076 4.076 13 C -0.187 4.187 14 C -0.061 4.061 15 C -0.178 4.178 16 C 0.553 3.447 17 O -0.505 6.505 18 N -0.738 5.738 19 C 0.140 3.860 20 C -0.103 4.103 21 S -0.230 6.230 22 C -0.089 4.089 23 C -0.106 4.106 24 C 0.081 3.919 25 O -0.574 6.574 26 H 0.275 0.725 27 H 0.139 0.861 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.394 0.606 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.048 0.952 41 H 0.048 0.952 42 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.190 -25.437 -0.829 25.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.128 4.128 3 Si 0.745 3.255 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.743 4.743 8 H 0.109 0.891 9 S 0.452 5.548 10 C -0.177 4.177 11 C -0.178 4.178 12 C -0.099 4.099 13 C -0.212 4.212 14 C -0.081 4.081 15 C -0.193 4.193 16 C 0.342 3.658 17 O -0.382 6.382 18 N -0.394 5.394 19 C 0.015 3.985 20 C -0.252 4.252 21 S -0.003 6.003 22 C -0.237 4.237 23 C -0.145 4.145 24 C 0.002 3.998 25 O -0.379 6.379 26 H 0.085 0.915 27 H 0.157 0.843 28 H 0.130 0.870 29 H 0.129 0.871 30 H 0.127 0.873 31 H 0.229 0.771 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -2.318 -23.388 -1.186 23.533 hybrid contribution 3.840 -0.475 0.380 3.888 sum 1.522 -23.863 -0.805 23.925 Atomic orbital electron populations 1.69986 1.06234 1.28358 1.44348 1.25110 0.94979 0.99665 0.93051 0.86090 0.79942 0.81261 0.78184 1.19153 1.20215 1.20226 1.24100 0.97040 0.94047 1.59065 0.89067 1.84782 1.02226 0.92930 1.74906 1.23096 1.00789 0.97002 0.96827 1.21444 0.91703 1.00898 1.03723 1.21089 0.98136 0.93372 0.97266 1.20628 0.96304 0.95283 1.09003 1.20873 0.92616 0.97352 0.97279 1.19068 0.92437 0.92667 1.15169 1.18313 0.89068 0.81341 0.77038 1.90801 1.43594 1.55224 1.48569 1.45804 1.09308 1.07398 1.76900 1.20818 0.85285 0.89145 1.03242 1.23557 0.96846 0.99522 1.05240 1.87142 1.13588 1.03981 1.95599 1.23239 1.01097 0.94322 1.05067 1.21191 0.95770 0.92933 1.04594 1.22115 0.85607 0.92638 0.99460 1.86479 1.31619 1.24147 1.95686 0.91541 0.84324 0.86999 0.87090 0.87266 0.77076 0.90557 0.90542 0.89375 0.89370 0.89786 0.89792 0.90033 0.90029 0.93414 0.93405 0.77121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.74 13.22 55.49 0.73 -24.01 16 2 C 0.08 2.28 5.49 -17.46 -0.10 2.18 16 3 Si 0.92 20.68 29.55 -169.99 -5.02 15.66 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.60 -16.42 9.00 30.94 0.28 -16.14 16 8 H 0.09 2.38 4.98 -52.48 -0.26 2.12 16 9 S 0.19 5.02 18.56 -107.50 -2.00 3.02 16 10 C -0.06 -1.30 6.14 -38.39 -0.24 -1.53 16 11 C -0.15 -3.17 9.22 -39.38 -0.36 -3.53 16 12 C -0.08 -1.29 10.03 -39.55 -0.40 -1.68 16 13 C -0.19 -2.82 10.02 -39.58 -0.40 -3.22 16 14 C -0.06 -0.94 9.53 -39.20 -0.37 -1.31 16 15 C -0.18 -3.47 5.89 -104.75 -0.62 -4.09 16 16 C 0.55 10.63 7.75 -12.51 -0.10 10.54 16 17 O -0.51 -11.87 13.77 5.27 0.07 -11.80 16 18 N -0.74 -10.15 5.51 -61.38 -0.34 -10.49 16 19 C 0.14 1.76 5.68 -4.04 -0.02 1.73 16 20 C -0.10 -0.90 6.05 37.16 0.22 -0.67 16 21 S -0.23 -2.22 21.74 -107.50 -2.34 -4.56 16 22 C -0.09 -0.57 5.94 37.16 0.22 -0.35 16 23 C -0.11 -0.73 5.59 -26.73 -0.15 -0.88 16 24 C 0.08 0.43 7.05 37.16 0.26 0.70 16 25 O -0.57 -3.83 13.66 -35.23 -0.48 -4.31 16 26 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.14 3.01 5.03 -52.49 -0.26 2.74 16 28 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 29 H 0.11 1.31 8.06 -52.48 -0.42 0.89 16 30 H 0.11 1.23 6.40 -52.49 -0.34 0.89 16 31 H 0.39 4.10 6.50 -40.82 -0.27 3.84 16 32 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.09 0.65 8.14 -51.92 -0.42 0.23 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 41 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 42 H 0.38 0.75 9.12 45.56 0.42 1.16 16 LS Contribution 378.60 15.07 5.71 5.71 Total: -1.00 -34.02 378.60 -10.35 -44.36 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -4.92 Total: 4.69 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -1.76 Total: -18.27 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 0.40 Total: -34.50 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.41 Total: -16.11 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -4.33 Total: -1.54 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.02 -10.35 -44.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225845719.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.495 kcal (2) G-P(sol) polarization free energy of solvation -34.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds