Wall clock time and date at job start Sat Apr 11 2020 06:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34892 * 117.00012 * 2 1 4 4 O 1.21620 * 119.99993 * 359.97438 * 3 2 1 5 5 C 1.46500 * 119.99956 * 179.97438 * 3 2 1 6 6 C 1.37990 * 126.26014 * 179.97438 * 5 3 2 7 7 C 1.39799 * 106.96378 * 179.75974 * 6 5 3 8 8 S 1.76205 * 126.07880 * 180.24401 * 7 6 5 9 9 O 1.42098 * 106.40184 * 203.54267 * 8 7 6 10 10 O 1.42106 * 106.39968 * 336.46263 * 8 7 6 11 11 N 1.65601 * 107.21792 * 89.99812 * 8 7 6 12 12 C 1.46500 * 120.00013 * 270.00016 * 11 8 7 13 13 C 1.50703 * 109.46653 * 95.00483 * 12 11 8 14 14 H 1.07997 * 120.00505 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99328 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00388 * 359.97438 * 15 13 12 17 17 Si 1.86810 * 119.99589 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46983 * 59.99675 * 17 15 13 19 19 H 1.48491 * 109.46971 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46690 * 299.99986 * 17 15 13 21 21 C 1.46502 * 119.99697 * 90.00350 * 11 8 7 22 22 C 1.53003 * 109.46991 * 94.99853 * 21 11 8 23 23 C 1.47203 * 109.46992 * 179.97438 * 22 21 11 24 24 N 9.99738 * 145.97697 * 321.50524 * 3 1 2 25 25 C 1.35485 * 107.84542 * 0.24577 * 7 6 5 26 26 N 1.34960 * 108.98467 * 359.97438 * 25 7 6 27 27 H 0.96999 * 125.63628 * 180.02562 * 26 25 7 28 28 H 1.09003 * 109.47180 * 60.00368 * 1 2 3 29 29 H 1.09004 * 109.47326 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47882 * 300.00646 * 1 2 3 31 31 H 1.08002 * 126.52131 * 0.03082 * 6 5 3 32 32 H 1.09003 * 109.46601 * 214.99814 * 12 11 8 33 33 H 1.08993 * 109.47406 * 335.00189 * 12 11 8 34 34 H 0.97001 * 119.99773 * 179.97438 * 16 15 13 35 35 H 1.09001 * 109.46848 * 214.99742 * 21 11 8 36 36 H 1.09006 * 109.47056 * 334.99785 * 21 11 8 37 37 H 1.09001 * 109.47234 * 299.99653 * 22 21 11 38 38 H 1.08994 * 109.46913 * 60.00302 * 22 21 11 39 39 H 1.07997 * 125.50653 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0643 1.2019 0.0000 4 8 1.4019 2.2219 -0.0005 5 6 3.5273 1.2786 0.0006 6 6 4.2841 2.4324 0.0001 7 6 5.6259 2.0401 0.0066 8 16 7.0215 3.1158 0.0149 9 8 8.1050 2.3716 -0.5249 10 8 6.5791 4.3513 -0.5303 11 7 7.4016 3.4133 1.5990 12 6 6.7952 4.5498 2.2969 13 6 5.5768 4.0837 3.0515 14 1 5.2833 3.0450 3.0146 15 6 4.8368 4.9835 3.7890 16 7 5.1945 6.2482 3.8344 17 14 3.3261 4.4060 4.7239 18 1 3.7215 3.3709 5.7125 19 1 2.7122 5.5576 5.4323 20 1 2.3441 3.8301 3.7702 21 6 8.3443 2.5400 2.3025 22 6 9.7484 3.1439 2.2326 23 6 10.6956 2.2667 2.9399 24 7 11.4279 1.5875 3.4818 25 6 5.6626 0.6858 0.0052 26 7 4.3987 0.2124 -0.0013 27 1 4.1460 -0.7241 -0.0032 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3635 0.5139 0.8899 31 1 3.9109 3.4459 -0.0002 32 1 7.5160 4.9731 2.9965 33 1 6.5046 5.3089 1.5708 34 1 4.6737 6.8812 4.3529 35 1 8.0417 2.4439 3.3453 36 1 8.3481 1.5563 1.8330 37 1 10.0511 3.2400 1.1898 38 1 9.7447 4.1275 2.7021 39 1 6.5583 0.0825 0.0095 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266125539.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:37 Heat of formation + Delta-G solvation = -83.599668 kcal Electronic energy + Delta-G solvation = -27741.399818 eV Core-core repulsion = 23584.640082 eV Total energy + Delta-G solvation = -4156.759736 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.092 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.47940 -39.92078 -37.14924 -36.62814 -36.49422 -35.66852 -35.24993 -32.77966 -31.47066 -30.65780 -30.09094 -27.71427 -26.94269 -23.81049 -23.43890 -22.28938 -21.71086 -20.38757 -19.38407 -17.97575 -17.52059 -17.13812 -16.78581 -16.51989 -16.43410 -15.97281 -15.53745 -15.37893 -14.69832 -14.53233 -14.43121 -13.82741 -13.77367 -13.62328 -13.34201 -13.20412 -12.67586 -12.56923 -12.49910 -12.33541 -12.27649 -11.93794 -11.69680 -11.53751 -11.35209 -11.13877 -10.99363 -10.98395 -10.94601 -10.71991 -10.59630 -10.49162 -10.11555 -9.85757 -9.45359 -8.57228 -8.48804 -8.21872 -6.11803 -4.17531 1.03615 1.17168 2.08771 2.45793 2.90329 2.96933 2.97277 3.04699 3.28062 3.33696 3.36858 3.63614 4.21358 4.38499 4.41245 4.66547 4.74229 4.89029 4.90307 4.99359 5.14209 5.24020 5.28092 5.31641 5.41858 5.51782 5.66296 5.78669 5.95274 6.12399 6.19168 6.35562 6.41500 6.65559 7.14846 7.21760 7.37162 7.52513 7.64584 7.73028 7.84837 8.12179 8.86727 9.49396 10.96261 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.009175 B = 0.004872 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3051.197158 B = 5746.000079 C = 7459.604054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.369 6.369 3 C 0.537 3.463 4 O -0.490 6.490 5 C -0.066 4.066 6 C 0.027 3.973 7 C -0.746 4.746 8 S 2.716 3.284 9 O -0.980 6.980 10 O -0.952 6.952 11 N -0.981 5.981 12 C 0.242 3.758 13 C -0.541 4.541 14 H 0.062 0.938 15 C 0.070 3.930 16 N -0.888 5.888 17 Si 0.886 3.114 18 H -0.278 1.278 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.139 3.861 22 C -0.054 4.054 23 C 0.223 3.777 24 N -0.453 5.453 25 C 0.151 3.849 26 N -0.519 5.519 27 H 0.425 0.575 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.065 0.935 31 H 0.170 0.830 32 H 0.044 0.956 33 H 0.058 0.942 34 H 0.265 0.735 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.113 0.887 38 H 0.119 0.881 39 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.380 -12.693 -7.651 15.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.286 6.286 3 C 0.382 3.618 4 O -0.376 6.376 5 C -0.174 4.174 6 C 0.002 3.998 7 C -0.838 4.838 8 S 2.804 3.196 9 O -0.971 6.971 10 O -0.942 6.942 11 N -0.819 5.819 12 C 0.121 3.879 13 C -0.580 4.580 14 H 0.080 0.920 15 C -0.134 4.134 16 N -0.526 5.526 17 Si 0.714 3.286 18 H -0.204 1.204 19 H -0.212 1.212 20 H -0.200 1.200 21 C 0.010 3.990 22 C -0.096 4.096 23 C -0.095 4.095 24 N -0.131 5.131 25 C 0.006 3.994 26 N -0.113 5.113 27 H 0.264 0.736 28 H 0.083 0.917 29 H 0.119 0.881 30 H 0.084 0.916 31 H 0.188 0.812 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.112 0.888 36 H 0.093 0.907 37 H 0.131 0.869 38 H 0.137 0.863 39 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -1.356 -13.023 -7.483 15.081 hybrid contribution -2.202 -0.855 0.889 2.524 sum -3.558 -13.878 -6.594 15.772 Atomic orbital electron populations 1.23263 0.75649 1.03590 1.02958 1.86522 1.23992 1.32933 1.85191 1.19720 0.86844 0.81775 0.73461 1.90950 1.65191 1.35642 1.45826 1.19371 0.86566 0.88281 1.23193 1.21093 0.89470 0.97888 0.91316 1.31410 1.17189 1.08090 1.27117 1.01161 0.72671 0.73114 0.72678 1.93512 1.51807 1.74212 1.77541 1.93567 1.82634 1.41510 1.76506 1.57464 1.54061 1.39708 1.30650 1.19339 0.93111 0.82220 0.93278 1.21470 1.10743 0.95475 1.30347 0.91982 1.24867 0.97408 0.94748 0.96373 1.69894 1.39634 1.02206 1.40845 0.86745 0.83481 0.78294 0.80129 1.20362 1.21155 1.19954 1.20889 0.85463 0.92167 1.00475 1.19931 0.91449 0.97428 1.00776 1.29144 0.93691 0.93600 0.93049 1.81193 1.10855 1.10528 1.10508 1.21781 0.87709 0.93627 0.96309 1.42055 1.05917 1.09060 1.54238 0.73617 0.91676 0.88085 0.91605 0.81215 0.93765 0.92411 0.92494 0.88837 0.90658 0.86901 0.86325 0.79224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.57 101.05 1.07 1.42 16 2 O -0.37 -4.44 10.58 -41.02 -0.43 -4.88 16 3 C 0.54 8.26 7.93 34.06 0.27 8.53 16 4 O -0.49 -9.03 16.68 -19.36 -0.32 -9.35 16 5 C -0.07 -0.99 7.10 -81.99 -0.58 -1.57 16 6 C 0.03 0.47 10.46 -39.09 -0.41 0.07 16 7 C -0.75 -11.62 6.18 -39.98 -0.25 -11.87 16 8 S 2.72 46.03 5.79 -107.50 -0.62 45.41 16 9 O -0.98 -15.90 16.82 -57.17 -0.96 -16.86 16 10 O -0.95 -19.66 16.42 -57.17 -0.94 -20.60 16 11 N -0.98 -16.67 2.77 -115.66 -0.32 -16.99 16 12 C 0.24 5.24 5.44 -5.19 -0.03 5.21 16 13 C -0.54 -13.14 9.38 -34.44 -0.32 -13.46 16 14 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 15 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 16 N -0.89 -24.26 13.29 55.43 0.74 -23.52 16 17 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 21 C 0.14 1.88 5.30 -4.04 -0.02 1.86 16 22 C -0.05 -0.63 6.02 -29.52 -0.18 -0.81 16 23 C 0.22 2.96 15.43 -20.75 -0.32 2.64 16 24 N -0.45 -7.10 18.54 42.17 0.78 -6.31 16 25 C 0.15 1.76 11.61 -17.16 -0.20 1.56 16 26 N -0.52 -5.74 6.07 -9.53 -0.06 -5.80 16 27 H 0.43 3.09 8.96 -40.82 -0.37 2.72 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.17 3.17 8.06 -52.49 -0.42 2.75 16 32 H 0.04 0.96 8.11 -51.93 -0.42 0.54 16 33 H 0.06 1.39 6.91 -51.93 -0.36 1.04 16 34 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 35 H 0.09 1.29 8.11 -51.93 -0.42 0.87 16 36 H 0.08 0.85 7.61 -51.93 -0.40 0.45 16 37 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.19 1.45 8.06 -52.49 -0.42 1.02 16 LS Contribution 371.34 15.07 5.60 5.60 Total: -1.00 -34.38 371.34 -7.10 -41.48 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -4.47 Total: 0.97 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -1.07 Total: -4.72 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: 1.14 Total: -52.62 kcal Atomic # 8 Polarization: -49.03 SS G_CDS: -2.66 Total: -51.69 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 46.03 SS G_CDS: -0.62 Total: 45.41 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.38 -7.10 -41.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266125539.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.123 kcal (2) G-P(sol) polarization free energy of solvation -34.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds