Wall clock time and date at job start Sat Apr 11 2020 06:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34892 * 117.00012 * 2 1 4 4 O 1.21620 * 119.99993 * 359.97438 * 3 2 1 5 5 C 1.46500 * 119.99956 * 179.97438 * 3 2 1 6 6 C 1.37990 * 126.26014 * 179.97438 * 5 3 2 7 7 C 1.39799 * 106.96378 * 179.75974 * 6 5 3 8 8 S 1.76205 * 126.07880 * 180.24401 * 7 6 5 9 9 O 1.42098 * 106.40184 * 203.54267 * 8 7 6 10 10 O 1.42106 * 106.39968 * 336.46263 * 8 7 6 11 11 N 1.65601 * 107.21792 * 89.99812 * 8 7 6 12 12 C 1.46500 * 120.00013 * 270.00016 * 11 8 7 13 13 C 1.50703 * 109.46653 * 95.00483 * 12 11 8 14 14 H 1.07997 * 120.00505 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99328 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00388 * 359.97438 * 15 13 12 17 17 Si 1.86810 * 119.99589 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46983 * 59.99675 * 17 15 13 19 19 H 1.48491 * 109.46971 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46690 * 299.99986 * 17 15 13 21 21 C 1.46502 * 119.99697 * 90.00350 * 11 8 7 22 22 C 1.53003 * 109.46991 * 94.99853 * 21 11 8 23 23 C 1.47203 * 109.46992 * 179.97438 * 22 21 11 24 24 N 9.99738 * 145.97697 * 321.50524 * 3 1 2 25 25 C 1.35485 * 107.84542 * 0.24577 * 7 6 5 26 26 N 1.34960 * 108.98467 * 359.97438 * 25 7 6 27 27 H 0.96999 * 125.63628 * 180.02562 * 26 25 7 28 28 H 1.09003 * 109.47180 * 60.00368 * 1 2 3 29 29 H 1.09004 * 109.47326 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47882 * 300.00646 * 1 2 3 31 31 H 1.08002 * 126.52131 * 0.03082 * 6 5 3 32 32 H 1.09003 * 109.46601 * 214.99814 * 12 11 8 33 33 H 1.08993 * 109.47406 * 335.00189 * 12 11 8 34 34 H 0.97001 * 119.99773 * 179.97438 * 16 15 13 35 35 H 1.09001 * 109.46848 * 214.99742 * 21 11 8 36 36 H 1.09006 * 109.47056 * 334.99785 * 21 11 8 37 37 H 1.09001 * 109.47234 * 299.99653 * 22 21 11 38 38 H 1.08994 * 109.46913 * 60.00302 * 22 21 11 39 39 H 1.07997 * 125.50653 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0643 1.2019 0.0000 4 8 1.4019 2.2219 -0.0005 5 6 3.5273 1.2786 0.0006 6 6 4.2841 2.4324 0.0001 7 6 5.6259 2.0401 0.0066 8 16 7.0215 3.1158 0.0149 9 8 8.1050 2.3716 -0.5249 10 8 6.5791 4.3513 -0.5303 11 7 7.4016 3.4133 1.5990 12 6 6.7952 4.5498 2.2969 13 6 5.5768 4.0837 3.0515 14 1 5.2833 3.0450 3.0146 15 6 4.8368 4.9835 3.7890 16 7 5.1945 6.2482 3.8344 17 14 3.3261 4.4060 4.7239 18 1 3.7215 3.3709 5.7125 19 1 2.7122 5.5576 5.4323 20 1 2.3441 3.8301 3.7702 21 6 8.3443 2.5400 2.3025 22 6 9.7484 3.1439 2.2326 23 6 10.6956 2.2667 2.9399 24 7 11.4279 1.5875 3.4818 25 6 5.6626 0.6858 0.0052 26 7 4.3987 0.2124 -0.0013 27 1 4.1460 -0.7241 -0.0032 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3635 0.5139 0.8899 31 1 3.9109 3.4459 -0.0002 32 1 7.5160 4.9731 2.9965 33 1 6.5046 5.3089 1.5708 34 1 4.6737 6.8812 4.3529 35 1 8.0417 2.4439 3.3453 36 1 8.3481 1.5563 1.8330 37 1 10.0511 3.2400 1.1898 38 1 9.7447 4.1275 2.7021 39 1 6.5583 0.0825 0.0095 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266125539.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:36 Heat of formation + Delta-G solvation = -108.428642 kcal Electronic energy + Delta-G solvation = -27742.476483 eV Core-core repulsion = 23584.640082 eV Total energy + Delta-G solvation = -4157.836401 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.092 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.57469 -41.02263 -38.35762 -38.01599 -37.62565 -36.97961 -36.67014 -34.60835 -32.58431 -31.97109 -31.19205 -28.67037 -28.54389 -25.26827 -24.53726 -23.72664 -22.92070 -21.52510 -20.45263 -19.30844 -18.77987 -18.25918 -18.19203 -18.06547 -17.58105 -17.13830 -16.76085 -16.73270 -16.21754 -15.77522 -15.48267 -15.16153 -14.85587 -14.74541 -14.59446 -14.32859 -14.26680 -13.80305 -13.75548 -13.56804 -13.36627 -13.13952 -13.08793 -12.96445 -12.85429 -12.75865 -12.62091 -12.27765 -12.20924 -12.06067 -11.95116 -11.94214 -11.67440 -11.48103 -10.62347 -10.46895 -9.76267 -9.67304 -8.10065 -6.18419 -0.29119 0.02785 0.95292 1.40542 1.42707 1.45499 1.48775 1.81229 1.85361 1.91709 2.03451 2.32681 2.48256 3.00017 3.22867 3.24615 3.46828 3.75157 4.03367 4.08080 4.18118 4.23617 4.26463 4.27878 4.38558 4.63796 4.64584 4.69993 4.75863 5.07685 5.14529 5.20017 5.24471 5.41973 5.48610 5.62392 5.86143 6.01104 6.21982 6.32665 6.51814 6.68259 6.93889 7.50288 8.97505 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.009175 B = 0.004872 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3051.197158 B = 5746.000079 C = 7459.604054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.357 6.357 3 C 0.538 3.462 4 O -0.532 6.532 5 C -0.072 4.072 6 C -0.008 4.008 7 C -0.772 4.772 8 S 2.729 3.271 9 O -0.969 6.969 10 O -0.998 6.998 11 N -0.981 5.981 12 C 0.256 3.744 13 C -0.532 4.532 14 H 0.068 0.932 15 C 0.020 3.980 16 N -0.923 5.923 17 Si 0.934 3.066 18 H -0.264 1.264 19 H -0.288 1.288 20 H -0.285 1.285 21 C 0.128 3.872 22 C -0.049 4.049 23 C 0.249 3.751 24 N -0.493 5.493 25 C 0.186 3.814 26 N -0.494 5.494 27 H 0.447 0.553 28 H 0.065 0.935 29 H 0.143 0.857 30 H 0.057 0.943 31 H 0.137 0.863 32 H 0.043 0.957 33 H 0.027 0.973 34 H 0.263 0.737 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.930 -16.233 -7.775 18.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.273 6.273 3 C 0.385 3.615 4 O -0.422 6.422 5 C -0.181 4.181 6 C -0.034 4.034 7 C -0.866 4.866 8 S 2.819 3.181 9 O -0.960 6.960 10 O -0.989 6.989 11 N -0.817 5.817 12 C 0.132 3.868 13 C -0.572 4.572 14 H 0.086 0.914 15 C -0.180 4.180 16 N -0.563 5.563 17 Si 0.761 3.239 18 H -0.189 1.189 19 H -0.214 1.214 20 H -0.211 1.211 21 C 0.001 3.999 22 C -0.091 4.091 23 C -0.068 4.068 24 N -0.171 5.171 25 C 0.038 3.962 26 N -0.089 5.089 27 H 0.291 0.709 28 H 0.084 0.916 29 H 0.161 0.839 30 H 0.076 0.924 31 H 0.155 0.845 32 H 0.061 0.939 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.110 0.890 36 H 0.125 0.875 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -0.885 -16.626 -7.602 18.303 hybrid contribution -2.381 0.133 0.843 2.529 sum -3.266 -16.493 -6.759 18.121 Atomic orbital electron populations 1.23639 0.73753 1.06237 1.02682 1.86516 1.25740 1.30750 1.84341 1.19848 0.87047 0.82098 0.72518 1.90929 1.66120 1.37228 1.47920 1.19202 0.86880 0.88794 1.23215 1.20950 0.91114 0.97560 0.93734 1.31099 1.15525 1.09894 1.30077 1.00519 0.72777 0.72552 0.72210 1.93514 1.51610 1.73633 1.77203 1.93513 1.83450 1.44411 1.77509 1.57249 1.54667 1.39310 1.30515 1.18863 0.92518 0.83085 0.92301 1.21844 1.10943 0.95492 1.28879 0.91404 1.25517 0.99713 0.94987 0.97767 1.69992 1.40883 1.03096 1.42310 0.85978 0.80807 0.77988 0.79117 1.18894 1.21397 1.21063 1.21189 0.85285 0.92967 1.00504 1.19953 0.90179 0.97283 1.01650 1.29193 0.92938 0.92682 0.91981 1.81230 1.12152 1.11862 1.11888 1.22498 0.89088 0.92365 0.92224 1.41978 1.05084 1.09412 1.52469 0.70931 0.91607 0.83891 0.92389 0.84486 0.93924 0.95520 0.92810 0.89010 0.87488 0.85318 0.85578 0.74105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.57 113.37 1.20 1.67 16 2 O -0.36 -7.88 10.58 -58.06 -0.61 -8.49 16 3 C 0.54 16.32 7.93 69.98 0.55 16.87 16 4 O -0.53 -20.22 16.68 19.44 0.32 -19.90 16 5 C -0.07 -2.09 7.10 40.32 0.29 -1.80 16 6 C -0.01 -0.27 10.46 22.59 0.24 -0.04 16 7 C -0.77 -22.91 6.18 22.01 0.14 -22.77 16 8 S 2.73 89.94 5.79 -56.49 -0.33 89.61 16 9 O -0.97 -28.64 16.82 -128.00 -2.15 -30.80 16 10 O -1.00 -42.64 16.42 -128.00 -2.10 -44.74 16 11 N -0.98 -32.24 2.77 -519.83 -1.44 -33.68 16 12 C 0.26 11.21 5.44 85.63 0.47 11.68 16 13 C -0.53 -25.98 9.38 25.60 0.24 -25.74 16 14 H 0.07 3.17 7.81 -2.91 -0.02 3.15 16 15 C 0.02 1.05 5.46 84.66 0.46 1.51 16 16 N -0.92 -51.73 13.29 21.45 0.28 -51.45 16 17 Si 0.93 42.73 29.54 68.60 2.03 44.76 16 18 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 19 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 20 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 21 C 0.13 3.12 5.30 86.38 0.46 3.57 16 22 C -0.05 -1.03 6.02 28.79 0.17 -0.86 16 23 C 0.25 6.04 15.43 89.44 1.38 7.42 16 24 N -0.49 -14.55 18.54 20.01 0.37 -14.18 16 25 C 0.19 3.55 11.61 83.58 0.97 4.52 16 26 N -0.49 -9.15 6.07 -184.05 -1.12 -10.27 16 27 H 0.45 4.40 8.96 -92.71 -0.83 3.57 16 28 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.14 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.14 5.60 8.06 -2.91 -0.02 5.58 16 32 H 0.04 1.88 8.11 -2.39 -0.02 1.86 16 33 H 0.03 1.35 6.91 -2.39 -0.02 1.33 16 34 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 35 H 0.09 2.31 8.11 -2.39 -0.02 2.29 16 36 H 0.11 1.94 7.61 -2.38 -0.02 1.92 16 37 H 0.13 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.13 2.54 8.14 -2.39 -0.02 2.53 16 39 H 0.24 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -77.84 371.34 2.09 -75.74 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: 0.28 Total: 7.36 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: 6.56 Total: -3.97 kcal Atomic # 7 Polarization: -107.67 SS G_CDS: -1.90 Total: -109.57 kcal Atomic # 8 Polarization: -99.39 SS G_CDS: -4.55 Total: -103.93 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Atomic # 16 Polarization: 89.94 SS G_CDS: -0.33 Total: 89.61 kcal Total: -77.84 2.09 -75.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266125539.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.686 kcal (2) G-P(sol) polarization free energy of solvation -77.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds