Wall clock time and date at job start Sat Apr 11 2020 06:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34953 * 126.03795 * 2 1 4 4 C 1.35320 * 107.74373 * 180.14835 * 3 2 1 5 5 C 1.50701 * 126.03720 * 179.87583 * 4 3 2 6 6 H 1.09003 * 109.47046 * 19.71510 * 5 4 3 7 7 N 1.46496 * 109.47088 * 139.71305 * 5 4 3 8 8 S 1.65599 * 120.00146 * 214.99921 * 7 5 4 9 9 O 1.42105 * 104.27655 * 308.92954 * 8 7 5 10 10 O 1.42101 * 104.27764 * 181.07391 * 8 7 5 11 11 C 1.81395 * 104.44748 * 65.00260 * 8 7 5 12 12 C 1.52999 * 109.46986 * 180.02562 * 11 8 7 13 13 C 1.50700 * 109.47535 * 180.02562 * 12 11 8 14 14 H 1.08006 * 119.99840 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00463 * 180.02562 * 13 12 11 16 16 N 1.31518 * 120.00062 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00103 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47395 * 89.99885 * 17 15 13 19 19 H 1.48504 * 109.47218 * 209.99622 * 17 15 13 20 20 H 1.48500 * 109.47369 * 329.99411 * 17 15 13 21 21 C 1.52996 * 109.46752 * 259.71633 * 5 4 3 22 22 F 1.39899 * 109.47373 * 299.99908 * 21 5 4 23 23 F 1.39902 * 109.47516 * 60.00231 * 21 5 4 24 24 F 1.39899 * 109.46890 * 180.02562 * 21 5 4 25 25 C 1.39867 * 107.92046 * 359.61244 * 4 3 2 26 26 N 1.30832 * 108.20299 * 0.24113 * 25 4 3 27 27 H 1.08996 * 109.46713 * 270.25975 * 1 2 3 28 28 H 1.08999 * 109.46739 * 30.25904 * 1 2 3 29 29 H 1.09003 * 109.47053 * 150.25894 * 1 2 3 30 30 H 1.07999 * 126.12523 * 0.02562 * 3 2 1 31 31 H 0.97001 * 119.99851 * 35.00447 * 7 5 4 32 32 H 1.09003 * 109.47393 * 299.99669 * 11 8 7 33 33 H 1.08994 * 109.47678 * 60.00285 * 11 8 7 34 34 H 1.09004 * 109.47080 * 299.99725 * 12 11 8 35 35 H 1.09005 * 109.47285 * 59.99790 * 12 11 8 36 36 H 0.96996 * 119.99792 * 180.02562 * 16 15 13 37 37 H 1.08004 * 125.89775 * 180.26604 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0913 0.0000 4 6 3.5438 0.6665 -0.0033 5 6 4.7681 1.5452 -0.0072 6 1 4.5001 2.5432 0.3397 7 7 5.7816 0.9745 0.8834 8 16 6.7710 1.9727 1.7592 9 8 7.2958 2.8777 0.7974 10 8 7.6224 1.0855 2.4713 11 6 5.6520 2.8329 2.8986 12 6 6.4566 3.7969 3.7729 13 6 5.5272 4.5111 4.7200 14 1 4.4683 4.2990 4.7001 15 6 6.0282 5.4360 5.6113 16 7 7.3175 5.6947 5.6352 17 14 4.8760 6.3218 6.7847 18 1 4.7564 5.5428 8.0434 19 1 5.4185 7.6707 7.0872 20 1 3.5371 6.4562 6.1566 21 6 5.3285 1.6326 -1.4281 22 9 5.6725 0.3517 -1.8734 23 9 4.3606 2.1777 -2.2786 24 9 6.4654 2.4479 -1.4316 25 6 3.5347 -0.7321 0.0036 26 7 2.2892 -1.1327 0.0055 27 1 -0.3632 0.0047 1.0276 28 1 -0.3633 0.8877 -0.5179 29 1 -0.3633 -0.8923 -0.5098 30 1 1.9282 2.1193 0.0004 31 1 5.8732 0.0119 0.9600 32 1 4.9117 3.3929 2.3273 33 1 5.1467 2.1035 3.5316 34 1 7.1972 3.2372 4.3443 35 1 6.9616 4.5264 3.1397 36 1 7.6700 6.3452 6.2625 37 1 4.4054 -1.3711 0.0071 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331335894.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:59 Heat of formation + Delta-G solvation = -174.628031 kcal Electronic energy + Delta-G solvation = -28647.045292 eV Core-core repulsion = 23944.481529 eV Total energy + Delta-G solvation = -4702.563762 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.081 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.94722 -48.47675 -48.40980 -42.27858 -38.19607 -37.32249 -36.95406 -35.85495 -33.94128 -33.09525 -31.74181 -29.15184 -27.56827 -27.31211 -24.27093 -23.62243 -22.24942 -21.56847 -20.35317 -19.46917 -19.38865 -19.07540 -18.84408 -18.36357 -17.87402 -16.97416 -16.73033 -16.49021 -16.29975 -15.90979 -15.33848 -15.30675 -15.24657 -15.01553 -14.86123 -14.61388 -14.56515 -14.55792 -14.43304 -13.83857 -13.71150 -13.63151 -13.49713 -13.26639 -13.15516 -13.04742 -12.92507 -12.87802 -12.74069 -12.20055 -12.10358 -11.72591 -11.69964 -11.30394 -10.74750 -10.60406 -10.44309 -9.61397 -8.21876 -6.35251 -0.76497 0.83274 1.42626 1.44533 1.45686 1.53794 1.56560 1.66972 2.09232 2.41250 2.77791 2.92038 2.97541 3.12346 3.13088 3.34659 3.61552 3.73550 3.86278 4.05192 4.07148 4.17810 4.28634 4.42508 4.49706 4.76317 4.77404 4.80627 4.91155 5.32056 5.34415 5.49643 5.72964 5.83998 6.02889 6.10338 6.62284 6.78974 7.34983 8.90349 Molecular weight = 341.08amu Principal moments of inertia in cm(-1) A = 0.011767 B = 0.003901 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.895335 B = 7175.538704 C = 8514.595226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.372 5.372 3 C 0.106 3.894 4 C -0.284 4.284 5 C 0.207 3.793 6 H 0.153 0.847 7 N -1.095 6.095 8 S 2.607 3.393 9 O -0.973 6.973 10 O -0.991 6.991 11 C -0.582 4.582 12 C 0.019 3.981 13 C -0.534 4.534 14 H 0.079 0.921 15 C -0.004 4.004 16 N -0.935 5.935 17 Si 0.971 3.029 18 H -0.274 1.274 19 H -0.286 1.286 20 H -0.254 1.254 21 C 0.428 3.572 22 F -0.184 7.184 23 F -0.178 7.178 24 F -0.177 7.177 25 C 0.068 3.932 26 N -0.326 5.326 27 H 0.088 0.912 28 H 0.119 0.881 29 H 0.091 0.909 30 H 0.220 0.780 31 H 0.431 0.569 32 H 0.151 0.849 33 H 0.145 0.855 34 H 0.004 0.996 35 H 0.011 0.989 36 H 0.266 0.734 37 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.377 -10.464 -14.069 23.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.152 5.152 3 C -0.044 4.044 4 C -0.298 4.298 5 C 0.095 3.905 6 H 0.170 0.830 7 N -0.853 5.853 8 S 2.704 3.296 9 O -0.963 6.963 10 O -0.981 6.981 11 C -0.715 4.715 12 C -0.020 4.020 13 C -0.573 4.573 14 H 0.097 0.903 15 C -0.202 4.202 16 N -0.575 5.575 17 Si 0.795 3.205 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.178 1.178 21 C 0.371 3.629 22 F -0.165 7.165 23 F -0.160 7.160 24 F -0.158 7.158 25 C -0.118 4.118 26 N -0.147 5.147 27 H 0.106 0.894 28 H 0.138 0.862 29 H 0.110 0.890 30 H 0.237 0.763 31 H 0.268 0.732 32 H 0.169 0.831 33 H 0.163 0.837 34 H 0.023 0.977 35 H 0.029 0.971 36 H 0.075 0.925 37 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -16.273 -11.175 -14.170 24.300 hybrid contribution 0.306 0.815 0.658 1.091 sum -15.968 -10.359 -13.512 23.342 Atomic orbital electron populations 1.22292 0.71416 1.06307 1.04924 1.48887 1.08256 1.03247 1.54804 1.22949 0.89508 0.95406 0.96565 1.19463 0.92894 0.93821 1.23583 1.19870 0.85705 1.00853 0.84083 0.82967 1.55548 1.51402 1.21500 1.56846 1.05082 0.75384 0.74157 0.74939 1.93603 1.77139 1.66238 1.59286 1.93529 1.64659 1.64800 1.75127 1.30304 1.15009 1.12025 1.14129 1.18843 0.95275 0.93406 0.94507 1.21517 0.94952 1.22492 1.18376 0.90271 1.26082 0.96782 0.97865 0.99460 1.70104 1.14205 1.35025 1.38143 0.85356 0.79106 0.77367 0.78680 1.19958 1.21189 1.17803 1.21502 0.76562 0.73777 0.91087 1.93136 1.92583 1.39694 1.91137 1.93158 1.63180 1.85971 1.73661 1.93339 1.52517 1.73102 1.96837 1.23938 0.95752 0.94376 0.97739 1.77395 1.01902 1.09637 1.25728 0.89374 0.86239 0.88999 0.76336 0.73155 0.83057 0.83674 0.97723 0.97050 0.92524 0.78886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.55 11.47 127.77 1.47 2.02 16 2 N -0.37 -5.47 4.01 -369.56 -1.48 -6.95 16 3 C 0.11 1.39 11.40 83.54 0.95 2.34 16 4 C -0.28 -4.92 4.66 -20.14 -0.09 -5.02 16 5 C 0.21 4.11 2.59 44.25 0.11 4.23 16 6 H 0.15 2.32 7.15 -2.39 -0.02 2.30 16 7 N -1.10 -25.01 5.21 -172.53 -0.90 -25.91 16 8 S 2.61 85.93 5.38 -56.49 -0.30 85.63 16 9 O -0.97 -37.79 15.26 -127.65 -1.95 -39.74 16 10 O -0.99 -39.54 18.08 -127.65 -2.31 -41.85 16 11 C -0.58 -19.58 5.90 71.98 0.42 -19.16 16 12 C 0.02 0.92 4.98 29.85 0.15 1.07 16 13 C -0.53 -28.05 9.11 25.60 0.23 -27.81 16 14 H 0.08 3.76 7.74 -2.91 -0.02 3.74 16 15 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 16 N -0.94 -55.59 13.29 21.45 0.28 -55.30 16 17 Si 0.97 41.70 29.54 68.60 2.03 43.73 16 18 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 19 H -0.29 -12.26 7.11 99.48 0.71 -11.56 16 20 H -0.25 -10.05 7.11 99.48 0.71 -9.35 16 21 C 0.43 10.33 2.82 71.98 0.20 10.53 16 22 F -0.18 -4.49 16.61 44.97 0.75 -3.74 16 23 F -0.18 -3.96 17.03 44.97 0.77 -3.19 16 24 F -0.18 -5.48 14.62 44.97 0.66 -4.82 16 25 C 0.07 1.30 10.89 85.24 0.93 2.23 16 26 N -0.33 -6.70 12.57 -57.02 -0.72 -7.42 16 27 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.12 0.04 8.14 -2.39 -0.02 0.02 16 29 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.22 1.07 8.06 -2.91 -0.02 1.05 16 31 H 0.43 8.15 7.84 -96.74 -0.76 7.39 16 32 H 0.15 4.03 7.44 -2.39 -0.02 4.01 16 33 H 0.15 4.26 8.14 -2.39 -0.02 4.24 16 34 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 35 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 36 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 37 H 0.19 3.01 7.68 -2.91 -0.02 2.98 16 Total: -1.00 -81.03 345.26 2.03 -78.99 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 0.37 Total: 9.90 kcal Atomic # 6 Polarization: -34.15 SS G_CDS: 4.84 Total: -29.31 kcal Atomic # 7 Polarization: -92.77 SS G_CDS: -2.81 Total: -95.58 kcal Atomic # 8 Polarization: -77.34 SS G_CDS: -4.26 Total: -81.59 kcal Atomic # 9 Polarization: -13.93 SS G_CDS: 2.17 Total: -11.76 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Atomic # 16 Polarization: 85.93 SS G_CDS: -0.30 Total: 85.63 kcal Total: -81.03 2.03 -78.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331335894.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.634 kcal (2) G-P(sol) polarization free energy of solvation -81.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds