Wall clock time and date at job start Sat Apr 11 2020 06:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35798 * 117.00131 * 2 1 4 4 C 1.38783 * 119.91511 * 359.97155 * 3 2 1 5 5 C 1.37949 * 120.13479 * 179.76682 * 4 3 2 6 6 Cl 1.73608 * 120.01505 * 180.25630 * 5 4 3 7 7 C 1.39830 * 119.96651 * 0.51562 * 5 4 3 8 8 C 1.47527 * 120.08037 * 179.76507 * 7 5 4 9 9 O 1.21593 * 120.00086 * 334.74290 * 8 7 5 10 10 N 1.34783 * 119.99952 * 154.74208 * 8 7 5 11 11 C 1.47578 * 134.49390 * 174.79126 * 10 8 7 12 12 C 1.53944 * 86.11600 * 155.35929 * 11 10 8 13 13 O 1.42900 * 113.74217 * 269.15081 * 12 11 10 14 14 C 1.50701 * 113.74172 * 137.95196 * 12 11 10 15 15 H 1.08000 * 120.00355 * 1.92495 * 14 12 11 16 16 C 1.37878 * 120.00109 * 181.91987 * 14 12 11 17 17 N 1.31512 * 120.00253 * 180.02562 * 16 14 12 18 18 Si 1.86808 * 119.99816 * 0.02562 * 16 14 12 19 19 H 1.48497 * 109.46805 * 269.99627 * 18 16 14 20 20 H 1.48496 * 109.47102 * 29.99842 * 18 16 14 21 21 H 1.48503 * 109.47028 * 149.99749 * 18 16 14 22 22 C 1.47811 * 134.45320 * 354.65887 * 10 8 7 23 23 C 1.39777 * 119.83421 * 359.48680 * 7 5 4 24 24 C 1.38085 * 119.86561 * 0.25430 * 23 7 5 25 25 O 1.36018 * 119.98887 * 180.02562 * 24 23 7 26 26 C 1.42900 * 116.99595 * 0.02562 * 25 24 23 27 27 H 1.09002 * 109.47730 * 300.00381 * 1 2 3 28 28 H 1.09005 * 109.46956 * 60.00516 * 1 2 3 29 29 H 1.09000 * 109.47450 * 180.02562 * 1 2 3 30 30 H 1.08001 * 119.93554 * 0.02952 * 4 3 2 31 31 H 1.08997 * 113.77095 * 41.05445 * 11 10 8 32 32 H 1.09004 * 113.76413 * 269.65592 * 11 10 8 33 33 H 0.96697 * 114.00381 * 178.07567 * 13 12 11 34 34 H 0.97003 * 120.00022 * 180.02562 * 17 16 14 35 35 H 1.08997 * 113.77268 * 90.38124 * 22 10 8 36 36 H 1.09009 * 113.83763 * 318.91255 * 22 10 8 37 37 H 1.08004 * 120.06828 * 180.23544 * 23 7 5 38 38 H 1.08998 * 109.47088 * 179.97438 * 26 25 24 39 39 H 1.09002 * 109.47529 * 300.00339 * 26 25 24 40 40 H 1.09005 * 109.47209 * 59.99961 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 1.2879 2.3728 -0.0006 5 6 1.9095 3.6043 0.0043 6 17 0.9588 5.0569 0.0102 7 6 3.3056 3.6820 -0.0011 8 6 3.9730 4.9977 -0.0012 9 8 3.3969 5.9716 -0.4463 10 7 5.2212 5.1203 0.4922 11 6 6.2022 6.2206 0.5626 12 6 6.7926 5.4769 1.7742 13 8 6.2272 5.8746 3.0249 14 6 8.2992 5.4481 1.7933 15 1 8.8588 5.9502 1.0179 16 6 8.9634 4.7810 2.8007 17 7 10.2781 4.7563 2.8177 18 14 7.9955 3.9121 4.1416 19 1 7.7512 4.8528 5.2644 20 1 6.6960 3.4483 3.5927 21 1 8.7700 2.7445 4.6337 22 6 6.1559 4.2064 1.1822 23 6 4.0673 2.5100 -0.0005 24 6 3.4380 1.2809 0.0000 25 8 4.1768 0.1389 0.0011 26 6 5.5982 0.2858 0.0022 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 0.2095 2.3135 -0.0006 31 1 5.7621 7.1862 0.8115 32 1 6.8736 6.2660 -0.2949 33 1 6.5743 5.3891 3.7857 34 1 10.7453 4.2866 3.5263 35 1 6.8138 3.6590 0.5072 36 1 5.6790 3.5669 1.9251 37 1 5.1459 2.5657 -0.0008 38 1 6.0653 -0.6990 0.0035 39 1 5.9076 0.8339 -0.8877 40 1 5.9061 0.8347 0.8922 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331865653.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:05 Heat of formation + Delta-G solvation = -68.940483 kcal Electronic energy + Delta-G solvation = -28174.951662 eV Core-core repulsion = 23984.491139 eV Total energy + Delta-G solvation = -4190.460523 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.96402 -39.77883 -38.71346 -38.03198 -36.79811 -35.91549 -34.52245 -32.61393 -31.18737 -30.39815 -28.79653 -27.58965 -27.39573 -25.86142 -25.41479 -23.14651 -22.33288 -20.45742 -19.47261 -18.42268 -17.73166 -17.33929 -17.20838 -16.43253 -16.40716 -16.24883 -15.49269 -15.45296 -15.18041 -14.94355 -14.66958 -13.91623 -13.84935 -13.65528 -13.35798 -13.26602 -12.96466 -12.64640 -12.54689 -12.26548 -12.21354 -12.08577 -11.67605 -11.63603 -11.43049 -11.33768 -11.02050 -10.95199 -10.66889 -10.54940 -10.18896 -9.72593 -9.34742 -9.07025 -9.02470 -8.74397 -8.14294 -7.95088 -6.48548 -4.55260 0.69889 0.93717 2.11627 2.88935 2.90838 2.93764 2.96215 3.04861 3.08929 3.25664 3.66135 3.96674 4.42821 4.48523 4.63489 4.66932 4.86096 4.86152 4.90884 5.02401 5.07542 5.11760 5.18614 5.27314 5.41170 5.44785 5.50984 5.61758 5.87238 5.97411 5.99726 6.09151 6.13802 6.30329 6.41130 6.52350 6.72333 7.13634 7.24128 7.96918 8.17517 8.45176 8.53581 8.55965 9.08791 10.63442 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.012416 B = 0.004351 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.629773 B = 6433.545679 C = 7877.180446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.298 6.298 3 C 0.130 3.870 4 C -0.179 4.179 5 C 0.015 3.985 6 Cl -0.034 7.034 7 C -0.110 4.110 8 C 0.572 3.428 9 O -0.531 6.531 10 N -0.628 5.628 11 C 0.130 3.870 12 C 0.197 3.803 13 O -0.551 6.551 14 C -0.537 4.537 15 H 0.092 0.908 16 C 0.082 3.918 17 N -0.874 5.874 18 Si 0.853 3.147 19 H -0.266 1.266 20 H -0.256 1.256 21 H -0.282 1.282 22 C 0.056 3.944 23 C -0.132 4.132 24 C 0.098 3.902 25 O -0.303 6.303 26 C 0.019 3.981 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.103 0.897 30 H 0.150 0.850 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.352 0.648 34 H 0.271 0.729 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.155 0.845 38 H 0.105 0.895 39 H 0.059 0.941 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.985 -10.960 -4.698 19.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.211 6.211 3 C 0.083 3.917 4 C -0.198 4.198 5 C -0.013 4.013 6 Cl -0.004 7.004 7 C -0.114 4.114 8 C 0.361 3.639 9 O -0.409 6.409 10 N -0.362 5.362 11 C 0.009 3.991 12 C 0.156 3.844 13 O -0.362 6.362 14 C -0.575 4.575 15 H 0.110 0.890 16 C -0.123 4.123 17 N -0.510 5.510 18 Si 0.681 3.319 19 H -0.192 1.192 20 H -0.181 1.181 21 H -0.208 1.208 22 C -0.067 4.067 23 C -0.151 4.151 24 C 0.052 3.948 25 O -0.216 6.216 26 C -0.076 4.076 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.121 0.879 30 H 0.168 0.832 31 H 0.097 0.903 32 H 0.115 0.885 33 H 0.204 0.796 34 H 0.082 0.918 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.172 0.828 38 H 0.124 0.876 39 H 0.078 0.922 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.690 -10.380 -5.294 19.544 hybrid contribution -0.119 -0.642 1.167 1.337 sum -15.809 -11.022 -4.128 19.709 Atomic orbital electron populations 1.23163 0.78166 1.04322 1.01644 1.86164 1.21373 1.25228 1.88330 1.18187 0.88945 0.84916 0.99620 1.20810 1.00637 0.89438 1.08923 1.20507 0.90575 0.88445 1.01768 1.98402 1.70615 1.35119 1.96308 1.19560 0.91808 0.94178 1.05888 1.17498 0.80719 0.87410 0.78243 1.90804 1.63911 1.38821 1.47375 1.50020 1.12257 1.16924 1.57010 1.23307 0.86750 0.91928 0.97127 1.20532 0.92465 0.89242 0.82141 1.86484 1.68490 1.65256 1.15964 1.21232 0.87701 1.35539 1.13040 0.88970 1.24987 0.94884 0.95215 0.97249 1.69851 1.06731 1.41163 1.33241 0.87420 0.80617 0.80452 0.83362 1.19183 1.18116 1.20845 1.24784 0.89232 0.97573 0.95131 1.21479 1.01336 0.89738 1.02573 1.18094 0.88269 0.86191 1.02284 1.86169 1.19225 1.27347 1.88863 1.23218 0.77846 1.04470 1.02053 0.92340 0.92340 0.87865 0.83226 0.90300 0.88530 0.79620 0.91835 0.88780 0.91086 0.82782 0.87636 0.92222 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.30 -3.52 10.26 -33.78 -0.35 -3.86 16 3 C 0.13 1.71 6.71 -38.93 -0.26 1.45 16 4 C -0.18 -2.23 8.79 -39.49 -0.35 -2.58 16 5 C 0.02 0.24 6.34 -39.09 -0.25 -0.01 16 6 Cl -0.03 -0.53 26.34 -51.86 -1.37 -1.89 16 7 C -0.11 -1.86 5.82 -104.94 -0.61 -2.47 16 8 C 0.57 11.28 7.68 -12.47 -0.10 11.18 16 9 O -0.53 -11.56 15.27 5.28 0.08 -11.48 16 10 N -0.63 -12.34 3.58 -179.36 -0.64 -12.98 16 11 C 0.13 2.62 8.23 -2.97 -0.02 2.60 16 12 C 0.20 4.32 1.06 -90.85 -0.10 4.22 16 13 O -0.55 -12.72 13.35 -35.23 -0.47 -13.19 16 14 C -0.54 -13.29 9.19 -34.44 -0.32 -13.60 16 15 H 0.09 2.44 8.06 -52.49 -0.42 2.02 16 16 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 17 N -0.87 -23.64 13.96 55.43 0.77 -22.87 16 18 Si 0.85 18.13 24.31 -169.99 -4.13 13.99 16 19 H -0.27 -5.58 7.05 56.52 0.40 -5.19 16 20 H -0.26 -5.05 5.16 56.52 0.29 -4.76 16 21 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 22 C 0.06 1.06 4.76 -2.84 -0.01 1.04 16 23 C -0.13 -1.97 7.80 -39.06 -0.30 -2.28 16 24 C 0.10 1.38 6.69 -39.19 -0.26 1.12 16 25 O -0.30 -4.05 10.28 -34.47 -0.35 -4.40 16 26 C 0.02 0.20 9.81 101.05 0.99 1.19 16 27 H 0.06 0.36 7.65 -51.93 -0.40 -0.04 16 28 H 0.06 0.35 7.65 -51.93 -0.40 -0.05 16 29 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.15 1.42 6.27 -52.49 -0.33 1.09 16 31 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 32 H 0.10 1.78 8.09 -51.93 -0.42 1.36 16 33 H 0.35 7.72 3.57 45.56 0.16 7.89 16 34 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 35 H 0.09 1.62 7.70 -51.93 -0.40 1.22 16 36 H 0.07 1.32 6.55 -51.92 -0.34 0.98 16 37 H 0.15 2.18 3.77 -52.48 -0.20 1.98 16 38 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 40 H 0.06 0.64 7.66 -51.93 -0.40 0.25 16 LS Contribution 342.19 15.07 5.16 5.16 Total: -1.00 -30.96 342.19 -6.05 -37.01 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -4.05 Total: 9.53 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: -0.70 Total: 4.99 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 0.13 Total: -35.85 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -1.09 Total: -32.94 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -4.13 Total: 13.99 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.37 Total: -1.89 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.96 -6.05 -37.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331865653.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.932 kcal (2) G-P(sol) polarization free energy of solvation -30.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds