Wall clock time and date at job start Sat Apr 11 2020 06:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35798 * 117.00131 * 2 1 4 4 C 1.38783 * 119.91511 * 359.97155 * 3 2 1 5 5 C 1.37949 * 120.13479 * 179.76682 * 4 3 2 6 6 Cl 1.73608 * 120.01505 * 180.25630 * 5 4 3 7 7 C 1.39830 * 119.96651 * 0.51562 * 5 4 3 8 8 C 1.47527 * 120.08037 * 179.76507 * 7 5 4 9 9 O 1.21593 * 120.00086 * 334.74290 * 8 7 5 10 10 N 1.34783 * 119.99952 * 154.74208 * 8 7 5 11 11 C 1.47578 * 134.49390 * 174.79126 * 10 8 7 12 12 C 1.53944 * 86.11600 * 155.35929 * 11 10 8 13 13 O 1.42900 * 113.74217 * 269.15081 * 12 11 10 14 14 C 1.50701 * 113.74172 * 137.95196 * 12 11 10 15 15 H 1.08000 * 120.00355 * 1.92495 * 14 12 11 16 16 C 1.37878 * 120.00109 * 181.91987 * 14 12 11 17 17 N 1.31512 * 120.00253 * 180.02562 * 16 14 12 18 18 Si 1.86808 * 119.99816 * 0.02562 * 16 14 12 19 19 H 1.48497 * 109.46805 * 269.99627 * 18 16 14 20 20 H 1.48496 * 109.47102 * 29.99842 * 18 16 14 21 21 H 1.48503 * 109.47028 * 149.99749 * 18 16 14 22 22 C 1.47811 * 134.45320 * 354.65887 * 10 8 7 23 23 C 1.39777 * 119.83421 * 359.48680 * 7 5 4 24 24 C 1.38085 * 119.86561 * 0.25430 * 23 7 5 25 25 O 1.36018 * 119.98887 * 180.02562 * 24 23 7 26 26 C 1.42900 * 116.99595 * 0.02562 * 25 24 23 27 27 H 1.09002 * 109.47730 * 300.00381 * 1 2 3 28 28 H 1.09005 * 109.46956 * 60.00516 * 1 2 3 29 29 H 1.09000 * 109.47450 * 180.02562 * 1 2 3 30 30 H 1.08001 * 119.93554 * 0.02952 * 4 3 2 31 31 H 1.08997 * 113.77095 * 41.05445 * 11 10 8 32 32 H 1.09004 * 113.76413 * 269.65592 * 11 10 8 33 33 H 0.96697 * 114.00381 * 178.07567 * 13 12 11 34 34 H 0.97003 * 120.00022 * 180.02562 * 17 16 14 35 35 H 1.08997 * 113.77268 * 90.38124 * 22 10 8 36 36 H 1.09009 * 113.83763 * 318.91255 * 22 10 8 37 37 H 1.08004 * 120.06828 * 180.23544 * 23 7 5 38 38 H 1.08998 * 109.47088 * 179.97438 * 26 25 24 39 39 H 1.09002 * 109.47529 * 300.00339 * 26 25 24 40 40 H 1.09005 * 109.47209 * 59.99961 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 1.2879 2.3728 -0.0006 5 6 1.9095 3.6043 0.0043 6 17 0.9588 5.0569 0.0102 7 6 3.3056 3.6820 -0.0011 8 6 3.9730 4.9977 -0.0012 9 8 3.3969 5.9716 -0.4463 10 7 5.2212 5.1203 0.4922 11 6 6.2022 6.2206 0.5626 12 6 6.7926 5.4769 1.7742 13 8 6.2272 5.8746 3.0249 14 6 8.2992 5.4481 1.7933 15 1 8.8588 5.9502 1.0179 16 6 8.9634 4.7810 2.8007 17 7 10.2781 4.7563 2.8177 18 14 7.9955 3.9121 4.1416 19 1 7.7512 4.8528 5.2644 20 1 6.6960 3.4483 3.5927 21 1 8.7700 2.7445 4.6337 22 6 6.1559 4.2064 1.1822 23 6 4.0673 2.5100 -0.0005 24 6 3.4380 1.2809 0.0000 25 8 4.1768 0.1389 0.0011 26 6 5.5982 0.2858 0.0022 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 0.2095 2.3135 -0.0006 31 1 5.7621 7.1862 0.8115 32 1 6.8736 6.2660 -0.2949 33 1 6.5743 5.3891 3.7857 34 1 10.7453 4.2866 3.5263 35 1 6.8138 3.6590 0.5072 36 1 5.6790 3.5669 1.9251 37 1 5.1459 2.5657 -0.0008 38 1 6.0653 -0.6990 0.0035 39 1 5.9076 0.8339 -0.8877 40 1 5.9061 0.8347 0.8922 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331865653.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:04 Heat of formation + Delta-G solvation = -91.792303 kcal Electronic energy + Delta-G solvation = -28175.942592 eV Core-core repulsion = 23984.491139 eV Total energy + Delta-G solvation = -4191.451453 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.07339 -41.21272 -39.61799 -39.47363 -38.04982 -37.03507 -36.24376 -34.54800 -32.36953 -31.38471 -30.35350 -28.46576 -28.18661 -27.44936 -27.08924 -24.32854 -23.34344 -22.02360 -20.84317 -19.59976 -19.33475 -18.71257 -18.35906 -18.05342 -17.57359 -17.23663 -16.89919 -16.47596 -16.25538 -16.14883 -15.71114 -15.50976 -15.39424 -15.00645 -14.70214 -14.57460 -14.29982 -14.09737 -13.87068 -13.74555 -13.30783 -13.05690 -12.99409 -12.70436 -12.57747 -12.45583 -12.40504 -12.19356 -12.15132 -11.94379 -11.63923 -11.36530 -11.07981 -10.84902 -10.47892 -10.05252 -9.68865 -9.03884 -8.41988 -6.54422 -0.44526 -0.11625 0.97998 1.26350 1.26968 1.39742 1.62467 1.75246 2.09339 2.14149 2.17485 2.41157 2.77689 3.13160 3.31424 3.48764 3.73801 3.79372 3.87181 4.16831 4.26365 4.29420 4.33822 4.34847 4.38392 4.39958 4.45436 4.50420 4.58793 4.67006 4.70558 4.76849 4.80027 4.88534 4.95124 5.11687 5.29205 5.87091 6.05190 6.31892 6.54083 6.63283 6.70918 7.01998 7.14179 8.73113 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.012416 B = 0.004351 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.629773 B = 6433.545679 C = 7877.180446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.310 6.310 3 C 0.139 3.861 4 C -0.166 4.166 5 C 0.007 3.993 6 Cl -0.043 7.043 7 C -0.137 4.137 8 C 0.570 3.430 9 O -0.560 6.560 10 N -0.630 5.630 11 C 0.128 3.872 12 C 0.186 3.814 13 O -0.562 6.562 14 C -0.542 4.542 15 H 0.060 0.940 16 C 0.035 3.965 17 N -0.921 5.921 18 Si 0.909 3.091 19 H -0.261 1.261 20 H -0.230 1.230 21 H -0.279 1.279 22 C 0.071 3.929 23 C -0.131 4.131 24 C 0.091 3.909 25 O -0.311 6.311 26 C 0.009 3.991 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.126 0.874 30 H 0.181 0.819 31 H 0.071 0.929 32 H 0.109 0.891 33 H 0.356 0.644 34 H 0.274 0.726 35 H 0.113 0.887 36 H 0.082 0.918 37 H 0.158 0.842 38 H 0.130 0.870 39 H 0.065 0.935 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.180 -13.449 -4.348 22.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.223 6.223 3 C 0.091 3.909 4 C -0.186 4.186 5 C -0.021 4.021 6 Cl -0.014 7.014 7 C -0.141 4.141 8 C 0.361 3.639 9 O -0.440 6.440 10 N -0.364 5.364 11 C 0.006 3.994 12 C 0.145 3.855 13 O -0.373 6.373 14 C -0.580 4.580 15 H 0.078 0.922 16 C -0.167 4.167 17 N -0.558 5.558 18 Si 0.734 3.266 19 H -0.187 1.187 20 H -0.154 1.154 21 H -0.205 1.205 22 C -0.051 4.051 23 C -0.150 4.150 24 C 0.045 3.955 25 O -0.225 6.225 26 C -0.085 4.085 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.144 0.856 30 H 0.199 0.801 31 H 0.089 0.911 32 H 0.126 0.874 33 H 0.208 0.792 34 H 0.083 0.917 35 H 0.130 0.870 36 H 0.100 0.900 37 H 0.176 0.824 38 H 0.148 0.852 39 H 0.084 0.916 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.903 -12.884 -4.954 22.607 hybrid contribution 0.543 0.087 0.994 1.136 sum -17.360 -12.797 -3.960 21.928 Atomic orbital electron populations 1.23562 0.75613 1.06419 1.02918 1.86171 1.23996 1.24408 1.87706 1.18316 0.88890 0.85646 0.98019 1.21032 1.02091 0.88012 1.07417 1.20667 0.90108 0.89055 1.02277 1.98397 1.70635 1.35955 1.96391 1.19393 0.92545 0.93103 1.09038 1.17951 0.80282 0.88323 0.77388 1.90777 1.64410 1.40171 1.48647 1.49985 1.12469 1.16602 1.57300 1.23302 0.87211 0.91872 0.96982 1.20595 0.90901 0.91645 0.82316 1.86480 1.68411 1.65920 1.16482 1.21319 0.89314 1.35002 1.12339 0.92184 1.25720 0.95589 0.95869 0.99491 1.69983 1.08624 1.42690 1.34511 0.86486 0.80315 0.79414 0.80416 1.18683 1.15415 1.20494 1.24643 0.88886 0.96261 0.95325 1.21419 1.01415 0.89511 1.02653 1.18231 0.89020 0.86109 1.02131 1.86170 1.20596 1.27027 1.88683 1.23486 0.76502 1.06201 1.02304 0.91086 0.90950 0.85563 0.80148 0.91075 0.87352 0.79177 0.91671 0.86955 0.90008 0.82436 0.85200 0.91596 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.20 16 2 O -0.31 -6.28 10.26 -77.25 -0.79 -7.08 16 3 C 0.14 3.26 6.71 22.69 0.15 3.41 16 4 C -0.17 -3.69 8.79 22.33 0.20 -3.49 16 5 C 0.01 0.21 6.34 22.59 0.14 0.35 16 6 Cl -0.04 -1.30 26.34 -2.72 -0.07 -1.37 16 7 C -0.14 -4.45 5.82 -20.07 -0.12 -4.57 16 8 C 0.57 22.16 7.68 86.69 0.67 22.82 16 9 O -0.56 -24.43 15.27 -4.01 -0.06 -24.49 16 10 N -0.63 -24.28 3.58 -843.47 -3.02 -27.30 16 11 C 0.13 5.18 8.23 86.49 0.71 5.89 16 12 C 0.19 8.06 1.06 -10.88 -0.01 8.04 16 13 O -0.56 -25.31 13.35 -148.98 -1.99 -27.30 16 14 C -0.54 -27.13 9.19 25.60 0.24 -26.90 16 15 H 0.06 3.31 8.06 -2.91 -0.02 3.29 16 16 C 0.03 1.77 5.47 84.66 0.46 2.23 16 17 N -0.92 -50.65 13.96 21.45 0.30 -50.35 16 18 Si 0.91 36.42 24.31 68.60 1.67 38.09 16 19 H -0.26 -10.25 7.05 99.48 0.70 -9.55 16 20 H -0.23 -8.20 5.16 99.48 0.51 -7.69 16 21 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 22 C 0.07 2.59 4.76 86.44 0.41 3.00 16 23 C -0.13 -3.67 7.80 22.61 0.18 -3.49 16 24 C 0.09 2.37 6.69 22.52 0.15 2.52 16 25 O -0.31 -7.55 10.28 -79.73 -0.82 -8.37 16 26 C 0.01 0.17 9.81 113.37 1.11 1.28 16 27 H 0.07 0.59 7.65 -2.39 -0.02 0.57 16 28 H 0.07 0.58 7.65 -2.38 -0.02 0.56 16 29 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.18 2.74 6.27 -2.91 -0.02 2.72 16 31 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 32 H 0.11 4.05 8.09 -2.38 -0.02 4.03 16 33 H 0.36 14.96 3.57 -74.06 -0.26 14.69 16 34 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 35 H 0.11 3.66 7.70 -2.39 -0.02 3.64 16 36 H 0.08 2.81 6.55 -2.38 -0.02 2.80 16 37 H 0.16 4.17 3.77 -2.91 -0.01 4.15 16 38 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.07 1.11 7.66 -2.39 -0.02 1.09 16 40 H 0.06 1.12 7.66 -2.38 -0.02 1.10 16 Total: -1.00 -67.48 342.19 1.27 -66.21 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: 0.65 Total: 29.66 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 5.40 Total: 12.30 kcal Atomic # 7 Polarization: -74.94 SS G_CDS: -2.72 Total: -77.66 kcal Atomic # 8 Polarization: -63.57 SS G_CDS: -3.66 Total: -67.24 kcal Atomic # 14 Polarization: 36.42 SS G_CDS: 1.67 Total: 38.09 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -0.07 Total: -1.37 kcal Total: -67.48 1.27 -66.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331865653.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.577 kcal (2) G-P(sol) polarization free energy of solvation -67.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds