Wall clock time and date at job start Sat Apr 11 2020 06:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 S 1.65597 * 119.99791 * 2 1 4 4 O 1.42099 * 106.40164 * 178.54201 * 3 2 1 5 5 O 1.42095 * 106.40491 * 311.46656 * 3 2 1 6 6 C 1.76204 * 107.21524 * 65.00361 * 3 2 1 7 7 C 1.38360 * 119.85641 * 269.72229 * 6 3 2 8 8 C 1.37959 * 120.14800 * 179.72370 * 7 6 3 9 9 C 1.39568 * 119.84990 * 0.55413 * 8 7 6 10 10 C 1.47849 * 120.14781 * 179.70384 * 9 8 7 11 11 O 1.21549 * 120.00582 * 180.02562 * 10 9 8 12 12 N 1.34781 * 119.99221 * 0.02562 * 10 9 8 13 13 C 1.46501 * 119.99255 * 180.02562 * 12 10 9 14 14 C 1.50705 * 109.46889 * 179.97438 * 13 12 10 15 15 O 1.21301 * 119.99685 * 0.02562 * 14 13 12 16 16 N 1.34775 * 120.00289 * 179.97438 * 14 13 12 17 17 C 1.37094 * 119.99847 * 179.97438 * 16 14 13 18 18 H 1.07995 * 120.00326 * 0.02562 * 17 16 14 19 19 C 1.38957 * 119.99610 * 180.02562 * 17 16 14 20 20 N 1.31410 * 119.99960 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99777 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47311 * 60.00115 * 21 19 17 23 23 H 1.48500 * 109.47303 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47406 * 300.00278 * 21 19 17 25 25 C 1.39581 * 119.71520 * 359.72255 * 9 8 7 26 26 C 1.37958 * 119.84962 * 359.97438 * 25 9 8 27 27 H 1.09001 * 109.47060 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47073 * 299.99532 * 1 2 3 29 29 H 1.09000 * 109.47212 * 59.99615 * 1 2 3 30 30 H 0.96999 * 120.00080 * 180.02562 * 2 1 3 31 31 H 1.08002 * 119.92397 * 0.02562 * 7 6 3 32 32 H 1.07991 * 120.07296 * 180.25180 * 8 7 6 33 33 H 0.96993 * 120.00176 * 359.97438 * 12 10 9 34 34 H 1.08999 * 109.47431 * 299.99737 * 13 12 10 35 35 H 1.08998 * 109.47688 * 60.00400 * 13 12 10 36 36 H 0.97000 * 119.99454 * 0.02562 * 16 14 13 37 37 H 0.97000 * 119.99512 * 179.97438 * 20 19 17 38 38 H 1.08000 * 120.07933 * 179.97438 * 25 9 8 39 39 H 1.08001 * 119.92835 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 3.6738 1.1003 0.0347 5 8 1.7119 2.2330 -1.0214 6 6 1.9378 2.2414 1.5255 7 6 0.8605 3.1051 1.6132 8 6 0.5735 3.7359 2.8060 9 6 1.3796 3.5101 3.9228 10 6 1.0819 4.1878 5.2027 11 8 1.7859 3.9896 6.1735 12 7 0.0298 5.0253 5.2928 13 6 -0.2648 5.6972 6.5609 14 6 -1.4812 6.5715 6.3954 15 8 -2.0466 6.6273 5.3236 16 7 -1.9414 7.2904 7.4383 17 6 -3.0476 8.0861 7.2875 18 1 -3.5505 8.1364 6.3331 19 6 -3.5217 8.8277 8.3627 20 7 -2.9094 8.7668 9.5238 21 14 -5.0294 9.9113 8.1574 22 1 -6.1898 9.0746 7.7592 23 1 -5.3278 10.5929 9.4425 24 1 -4.7689 10.9283 7.1071 25 6 2.4683 2.6420 3.8261 26 6 2.7405 2.0127 2.6289 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.9501 -0.8400 -0.0004 31 1 0.2399 3.2821 0.7471 32 1 -0.2701 4.4067 2.8742 33 1 -0.5318 5.1838 4.5180 34 1 -0.4557 4.9508 7.3319 35 1 0.5867 6.3118 6.8530 36 1 -1.4894 7.2454 8.2954 37 1 -3.2402 9.2849 10.2742 38 1 3.0962 2.4633 4.6864 39 1 3.5829 1.3411 2.5526 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339925816.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:08 Heat of formation + Delta-G solvation = -116.131899 kcal Electronic energy + Delta-G solvation = -26047.399717 eV Core-core repulsion = 21889.229277 eV Total energy + Delta-G solvation = -4158.170439 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.092 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -40.42837 -38.83362 -38.02944 -37.63810 -36.24502 -35.46174 -34.68459 -33.88349 -31.99591 -31.48524 -31.39780 -27.92852 -26.47190 -25.07427 -24.02010 -23.05960 -20.74669 -19.95283 -19.78294 -18.72296 -18.28030 -18.00163 -17.60175 -16.71202 -16.25668 -15.66398 -15.49063 -15.28974 -15.24395 -14.76868 -14.64494 -14.35852 -14.18426 -14.09438 -13.97242 -13.67613 -13.33575 -13.15910 -13.10296 -12.48335 -12.40961 -12.32210 -12.07616 -12.07036 -11.69968 -11.62810 -11.37327 -11.16044 -10.56104 -10.38620 -10.18442 -10.05431 -9.79032 -9.70131 -9.46710 -9.01327 -8.74194 -8.18297 -6.58509 -4.00934 -0.13852 0.14981 0.90149 2.35182 2.69322 3.04512 3.08513 3.17646 3.22049 3.27640 3.48289 3.64903 3.91299 4.04498 4.35331 4.44629 4.53805 4.57769 4.74438 4.87676 4.95085 4.98587 5.09684 5.19741 5.26815 5.28602 5.49097 5.62779 5.64341 5.77443 5.82165 5.90446 5.95263 6.33082 6.41166 6.44381 7.39118 7.53426 7.83183 8.14027 8.36391 8.96758 9.30356 9.77630 10.58050 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.023785 B = 0.001972 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.930372 B =14194.620120 C =14964.024570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -1.120 6.120 3 S 2.699 3.301 4 O -0.957 6.957 5 O -0.952 6.952 6 C -0.664 4.664 7 C -0.028 4.028 8 C -0.106 4.106 9 C -0.068 4.068 10 C 0.548 3.452 11 O -0.536 6.536 12 N -0.696 5.696 13 C 0.107 3.893 14 C 0.425 3.575 15 O -0.599 6.599 16 N -0.546 5.546 17 C -0.307 4.307 18 H 0.106 0.894 19 C 0.027 3.973 20 N -0.893 5.893 21 Si 0.935 3.065 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.272 1.272 25 C -0.083 4.083 26 C -0.027 4.027 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.420 0.580 31 H 0.148 0.852 32 H 0.144 0.856 33 H 0.412 0.588 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.396 0.604 37 H 0.276 0.724 38 H 0.148 0.852 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.288 -17.817 -14.881 24.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.880 5.880 3 S 2.787 3.213 4 O -0.947 6.947 5 O -0.942 6.942 6 C -0.751 4.751 7 C -0.047 4.047 8 C -0.126 4.126 9 C -0.071 4.071 10 C 0.333 3.667 11 O -0.414 6.414 12 N -0.350 5.350 13 C -0.020 4.020 14 C 0.211 3.789 15 O -0.486 6.486 16 N -0.180 5.180 17 C -0.437 4.437 18 H 0.123 0.877 19 C -0.177 4.177 20 N -0.533 5.533 21 Si 0.761 3.239 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.197 1.197 25 C -0.103 4.103 26 C -0.047 4.047 27 H 0.103 0.897 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.254 0.746 31 H 0.166 0.834 32 H 0.161 0.839 33 H 0.251 0.749 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.230 0.770 37 H 0.086 0.914 38 H 0.166 0.834 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 8.721 -17.291 -15.326 24.697 hybrid contribution -0.926 0.428 1.041 1.457 sum 7.794 -16.864 -14.286 23.436 Atomic orbital electron populations 1.21549 0.78151 1.04518 1.02337 1.55302 1.16384 1.24322 1.91993 1.01837 0.72890 0.72746 0.73832 1.93605 1.30650 1.83357 1.87088 1.93605 1.78648 1.68365 1.53595 1.31070 1.06965 1.15240 1.21779 1.20913 0.93725 0.91922 0.98156 1.21613 0.99484 0.99346 0.92149 1.20403 0.96084 0.96866 0.93785 1.18185 0.81035 0.79679 0.87762 1.90785 1.49194 1.63520 1.37949 1.45655 1.29740 1.44525 1.15128 1.21035 0.98311 0.96637 0.86016 1.19669 0.87573 0.85747 0.85925 1.90496 1.61403 1.69663 1.27017 1.41784 1.26606 1.38348 1.11252 1.19687 1.04457 1.20613 0.98896 0.87650 1.25349 0.99469 0.98157 0.94678 1.69604 1.40703 1.41414 1.01563 0.85853 0.80763 0.79670 0.77575 1.19725 1.20808 1.19717 1.21428 0.95974 0.94478 0.98422 1.20899 0.96560 0.96356 0.90858 0.89728 0.91908 0.91077 0.74630 0.83426 0.83872 0.74866 0.89432 0.89438 0.76978 0.91434 0.83436 0.83535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.32 11.14 59.85 0.67 0.99 16 2 N -1.12 -5.67 6.19 -16.63 -0.10 -5.77 16 3 S 2.70 22.66 5.74 -107.50 -0.62 22.05 16 4 O -0.96 -10.38 17.27 -57.17 -0.99 -11.37 16 5 O -0.95 -10.64 16.99 -57.17 -0.97 -11.61 16 6 C -0.66 -5.99 5.95 -39.49 -0.24 -6.23 16 7 C -0.03 -0.26 9.50 -39.64 -0.38 -0.63 16 8 C -0.11 -1.12 9.54 -39.19 -0.37 -1.49 16 9 C -0.07 -0.84 5.87 -104.97 -0.62 -1.45 16 10 C 0.55 8.32 7.77 -12.33 -0.10 8.23 16 11 O -0.54 -9.53 16.35 5.32 0.09 -9.44 16 12 N -0.70 -10.99 5.48 -62.43 -0.34 -11.33 16 13 C 0.11 1.88 6.15 -5.19 -0.03 1.85 16 14 C 0.43 9.36 7.85 -10.98 -0.09 9.27 16 15 O -0.60 -14.68 15.24 5.54 0.08 -14.59 16 16 N -0.55 -13.10 5.29 -10.96 -0.06 -13.16 16 17 C -0.31 -8.13 9.68 -14.93 -0.14 -8.27 16 18 H 0.11 2.90 7.16 -52.49 -0.38 2.52 16 19 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 20 N -0.89 -23.32 13.05 55.50 0.72 -22.60 16 21 Si 0.94 20.09 29.55 -169.99 -5.02 15.07 16 22 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 23 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 24 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 25 C -0.08 -0.90 9.60 -39.18 -0.38 -1.28 16 26 C -0.03 -0.25 9.50 -39.64 -0.38 -0.63 16 27 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.07 0.29 8.10 -51.93 -0.42 -0.13 16 30 H 0.42 1.27 8.96 -34.47 -0.31 0.96 16 31 H 0.15 1.07 7.60 -52.49 -0.40 0.67 16 32 H 0.14 1.37 6.41 -52.49 -0.34 1.03 16 33 H 0.41 6.24 5.47 -40.82 -0.22 6.02 16 34 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.40 9.14 7.90 -40.82 -0.32 8.81 16 37 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 38 H 0.15 1.51 7.65 -52.49 -0.40 1.11 16 39 H 0.15 1.03 7.60 -52.49 -0.40 0.63 16 LS Contribution 358.25 15.07 5.40 5.40 Total: -1.00 -35.10 358.25 -7.96 -43.07 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -4.01 Total: 13.37 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -2.14 Total: 0.93 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: 0.22 Total: -52.86 kcal Atomic # 8 Polarization: -45.23 SS G_CDS: -1.79 Total: -47.02 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 16 Polarization: 22.66 SS G_CDS: -0.62 Total: 22.05 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.10 -7.96 -43.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339925816.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.066 kcal (2) G-P(sol) polarization free energy of solvation -35.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds