Wall clock time and date at job start Sat Apr 11 2020 06:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 S 1.65597 * 119.99791 * 2 1 4 4 O 1.42099 * 106.40164 * 178.54201 * 3 2 1 5 5 O 1.42095 * 106.40491 * 311.46656 * 3 2 1 6 6 C 1.76204 * 107.21524 * 65.00361 * 3 2 1 7 7 C 1.38360 * 119.85641 * 269.72229 * 6 3 2 8 8 C 1.37959 * 120.14800 * 179.72370 * 7 6 3 9 9 C 1.39568 * 119.84990 * 0.55413 * 8 7 6 10 10 C 1.47849 * 120.14781 * 179.70384 * 9 8 7 11 11 O 1.21549 * 120.00582 * 180.02562 * 10 9 8 12 12 N 1.34781 * 119.99221 * 0.02562 * 10 9 8 13 13 C 1.46501 * 119.99255 * 180.02562 * 12 10 9 14 14 C 1.50705 * 109.46889 * 179.97438 * 13 12 10 15 15 O 1.21301 * 119.99685 * 0.02562 * 14 13 12 16 16 N 1.34775 * 120.00289 * 179.97438 * 14 13 12 17 17 C 1.37094 * 119.99847 * 179.97438 * 16 14 13 18 18 H 1.07995 * 120.00326 * 0.02562 * 17 16 14 19 19 C 1.38957 * 119.99610 * 180.02562 * 17 16 14 20 20 N 1.31410 * 119.99960 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99777 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47311 * 60.00115 * 21 19 17 23 23 H 1.48500 * 109.47303 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47406 * 300.00278 * 21 19 17 25 25 C 1.39581 * 119.71520 * 359.72255 * 9 8 7 26 26 C 1.37958 * 119.84962 * 359.97438 * 25 9 8 27 27 H 1.09001 * 109.47060 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47073 * 299.99532 * 1 2 3 29 29 H 1.09000 * 109.47212 * 59.99615 * 1 2 3 30 30 H 0.96999 * 120.00080 * 180.02562 * 2 1 3 31 31 H 1.08002 * 119.92397 * 0.02562 * 7 6 3 32 32 H 1.07991 * 120.07296 * 180.25180 * 8 7 6 33 33 H 0.96993 * 120.00176 * 359.97438 * 12 10 9 34 34 H 1.08999 * 109.47431 * 299.99737 * 13 12 10 35 35 H 1.08998 * 109.47688 * 60.00400 * 13 12 10 36 36 H 0.97000 * 119.99454 * 0.02562 * 16 14 13 37 37 H 0.97000 * 119.99512 * 179.97438 * 20 19 17 38 38 H 1.08000 * 120.07933 * 179.97438 * 25 9 8 39 39 H 1.08001 * 119.92835 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 3.6738 1.1003 0.0347 5 8 1.7119 2.2330 -1.0214 6 6 1.9378 2.2414 1.5255 7 6 0.8605 3.1051 1.6132 8 6 0.5735 3.7359 2.8060 9 6 1.3796 3.5101 3.9228 10 6 1.0819 4.1878 5.2027 11 8 1.7859 3.9896 6.1735 12 7 0.0298 5.0253 5.2928 13 6 -0.2648 5.6972 6.5609 14 6 -1.4812 6.5715 6.3954 15 8 -2.0466 6.6273 5.3236 16 7 -1.9414 7.2904 7.4383 17 6 -3.0476 8.0861 7.2875 18 1 -3.5505 8.1364 6.3331 19 6 -3.5217 8.8277 8.3627 20 7 -2.9094 8.7668 9.5238 21 14 -5.0294 9.9113 8.1574 22 1 -6.1898 9.0746 7.7592 23 1 -5.3278 10.5929 9.4425 24 1 -4.7689 10.9283 7.1071 25 6 2.4683 2.6420 3.8261 26 6 2.7405 2.0127 2.6289 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.9501 -0.8400 -0.0004 31 1 0.2399 3.2821 0.7471 32 1 -0.2701 4.4067 2.8742 33 1 -0.5318 5.1838 4.5180 34 1 -0.4557 4.9508 7.3319 35 1 0.5867 6.3118 6.8530 36 1 -1.4894 7.2454 8.2954 37 1 -3.2402 9.2849 10.2742 38 1 3.0962 2.4633 4.6864 39 1 3.5829 1.3411 2.5526 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339925816.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:07 Heat of formation + Delta-G solvation = -145.486698 kcal Electronic energy + Delta-G solvation = -26048.672636 eV Core-core repulsion = 21889.229277 eV Total energy + Delta-G solvation = -4159.443359 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.092 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.54322 -40.26964 -39.35646 -38.40930 -37.02341 -36.33233 -35.88848 -35.50390 -33.43083 -32.84888 -32.24494 -29.40124 -26.82994 -26.71100 -25.18445 -23.87872 -21.86799 -21.45563 -20.62635 -20.17419 -19.53328 -18.92781 -18.49172 -17.58879 -17.40701 -17.04621 -16.86736 -16.57894 -16.16751 -16.04474 -15.67344 -15.61976 -15.51782 -15.17696 -14.69684 -14.65853 -14.22104 -14.08020 -13.95596 -13.78891 -13.57585 -13.55401 -13.28224 -13.19898 -12.91119 -12.53498 -12.48474 -12.40869 -12.17060 -12.13997 -11.57796 -11.33292 -10.70549 -10.60104 -10.54405 -10.30708 -10.23688 -10.11286 -8.52638 -6.02951 -0.90587 -0.61290 0.12488 1.36625 1.40641 1.42591 1.53061 1.81569 1.87816 2.02360 2.28911 2.45372 2.71607 3.05491 3.14637 3.20875 3.43388 3.64475 3.74492 4.10610 4.15515 4.21774 4.24953 4.36374 4.36981 4.42538 4.69409 4.77049 4.83139 4.85391 4.92025 5.04566 5.05970 5.09916 5.36791 5.56657 5.89207 6.10607 6.29696 6.45683 6.90914 7.01502 7.41347 7.91130 8.63823 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.023785 B = 0.001972 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.930372 B =14194.620120 C =14964.024570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -1.107 6.107 3 S 2.721 3.279 4 O -0.981 6.981 5 O -0.979 6.979 6 C -0.659 4.659 7 C -0.029 4.029 8 C -0.107 4.107 9 C -0.088 4.088 10 C 0.552 3.448 11 O -0.565 6.565 12 N -0.698 5.698 13 C 0.119 3.881 14 C 0.432 3.568 15 O -0.623 6.623 16 N -0.558 5.558 17 C -0.338 4.338 18 H 0.088 0.912 19 C -0.010 4.010 20 N -0.915 5.915 21 Si 0.997 3.003 22 H -0.269 1.269 23 H -0.273 1.273 24 H -0.270 1.270 25 C -0.088 4.088 26 C -0.026 4.026 27 H 0.109 0.891 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.431 0.569 31 H 0.168 0.832 32 H 0.149 0.851 33 H 0.415 0.585 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.399 0.601 37 H 0.280 0.720 38 H 0.150 0.850 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.108 -18.873 -15.818 25.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.871 5.871 3 S 2.808 3.192 4 O -0.971 6.971 5 O -0.969 6.969 6 C -0.745 4.745 7 C -0.048 4.048 8 C -0.127 4.127 9 C -0.091 4.091 10 C 0.340 3.660 11 O -0.446 6.446 12 N -0.352 5.352 13 C -0.008 4.008 14 C 0.219 3.781 15 O -0.512 6.512 16 N -0.193 5.193 17 C -0.467 4.467 18 H 0.106 0.894 19 C -0.211 4.211 20 N -0.555 5.555 21 Si 0.820 3.180 22 H -0.194 1.194 23 H -0.197 1.197 24 H -0.195 1.195 25 C -0.107 4.107 26 C -0.045 4.045 27 H 0.127 0.873 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.268 0.732 31 H 0.185 0.815 32 H 0.167 0.833 33 H 0.255 0.745 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.234 0.766 37 H 0.090 0.910 38 H 0.167 0.833 39 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 8.558 -18.365 -16.267 25.983 hybrid contribution -0.836 0.641 1.240 1.627 sum 7.722 -17.724 -15.027 24.486 Atomic orbital electron populations 1.21805 0.77055 1.06280 1.02564 1.54996 1.16977 1.23593 1.91502 1.01067 0.72166 0.72860 0.73079 1.93570 1.32474 1.83792 1.87276 1.93573 1.79037 1.69705 1.54586 1.31266 1.06507 1.14791 1.21923 1.21164 0.93955 0.91381 0.98263 1.21702 0.99393 0.99484 0.92088 1.20238 0.97723 0.98270 0.92880 1.18572 0.80033 0.78937 0.88498 1.90763 1.50046 1.64497 1.39275 1.45643 1.30252 1.44766 1.14538 1.20866 0.96271 0.96366 0.87339 1.20353 0.87978 0.84905 0.84907 1.90474 1.62492 1.70274 1.27925 1.41835 1.26608 1.38935 1.11898 1.19703 1.05866 1.22407 0.98726 0.89443 1.26136 1.01923 0.98894 0.94160 1.69671 1.41810 1.41975 1.02038 0.84929 0.77352 0.77904 0.77829 1.19393 1.19716 1.19514 1.21530 0.95606 0.94353 0.99230 1.21148 0.97024 0.96171 0.90119 0.87285 0.91426 0.91228 0.73196 0.81451 0.83299 0.74482 0.88174 0.88361 0.76648 0.91034 0.83276 0.81341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.37 11.14 127.77 1.42 1.79 16 2 N -1.11 -8.62 6.19 -206.52 -1.28 -9.90 16 3 S 2.72 40.89 5.74 -56.49 -0.32 40.56 16 4 O -0.98 -19.71 17.27 -128.00 -2.21 -21.92 16 5 O -0.98 -20.43 16.99 -128.00 -2.17 -22.61 16 6 C -0.66 -10.67 5.95 22.33 0.13 -10.54 16 7 C -0.03 -0.48 9.50 22.23 0.21 -0.27 16 8 C -0.11 -2.14 9.54 22.52 0.21 -1.93 16 9 C -0.09 -2.10 5.87 -20.09 -0.12 -2.21 16 10 C 0.55 16.58 7.77 86.79 0.67 17.26 16 11 O -0.57 -19.99 16.35 -3.87 -0.06 -20.05 16 12 N -0.70 -21.76 5.48 -469.69 -2.57 -24.34 16 13 C 0.12 4.12 6.15 85.63 0.53 4.65 16 14 C 0.43 19.11 7.85 87.66 0.69 19.80 16 15 O -0.62 -30.83 15.24 -3.09 -0.05 -30.88 16 16 N -0.56 -27.15 5.29 -306.97 -1.62 -28.77 16 17 C -0.34 -18.14 9.68 84.04 0.81 -17.33 16 18 H 0.09 4.92 7.16 -2.91 -0.02 4.90 16 19 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 20 N -0.92 -47.72 13.05 21.67 0.28 -47.43 16 21 Si 1.00 40.88 29.55 68.60 2.03 42.90 16 22 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 23 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 24 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 25 C -0.09 -1.81 9.60 22.53 0.22 -1.59 16 26 C -0.03 -0.43 9.50 22.23 0.21 -0.21 16 27 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 28 H 0.07 0.32 8.14 -2.38 -0.02 0.30 16 29 H 0.07 0.43 8.10 -2.39 -0.02 0.41 16 30 H 0.43 1.53 8.96 -96.75 -0.87 0.66 16 31 H 0.17 2.09 7.60 -2.91 -0.02 2.06 16 32 H 0.15 2.72 6.41 -2.92 -0.02 2.70 16 33 H 0.42 12.46 5.47 -92.71 -0.51 11.96 16 34 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 35 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 36 H 0.40 18.67 7.90 -92.71 -0.73 17.93 16 37 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 38 H 0.15 2.97 7.65 -2.91 -0.02 2.95 16 39 H 0.17 2.00 7.60 -2.91 -0.02 1.98 16 Total: -1.00 -74.53 358.25 -3.48 -78.01 By element: Atomic # 1 Polarization: 36.02 SS G_CDS: -0.96 Total: 35.06 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: 5.46 Total: 9.37 kcal Atomic # 7 Polarization: -105.25 SS G_CDS: -5.19 Total: -110.44 kcal Atomic # 8 Polarization: -90.96 SS G_CDS: -4.49 Total: -95.45 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.90 kcal Atomic # 16 Polarization: 40.89 SS G_CDS: -0.32 Total: 40.56 kcal Total: -74.53 -3.48 -78.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339925816.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.478 kcal (2) G-P(sol) polarization free energy of solvation -74.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds