Wall clock time and date at job start Sat Apr 11 2020 06:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00494 * 2 1 4 4 H 1.48495 * 109.46861 * 239.99839 * 3 2 1 5 5 H 1.48506 * 109.46797 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47264 * 120.00006 * 3 2 1 7 7 C 1.37880 * 119.99576 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99831 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00124 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47403 * 180.02562 * 9 7 2 11 11 C 1.34784 * 119.99892 * 90.00011 * 10 9 7 12 12 O 1.21286 * 119.99917 * 175.18343 * 11 10 9 13 13 C 1.50698 * 120.00128 * 355.17950 * 11 10 9 14 14 H 1.09002 * 110.27961 * 327.11824 * 13 11 10 15 15 C 1.54169 * 110.31946 * 89.33696 * 13 11 10 16 16 C 1.54364 * 108.77661 * 146.82052 * 15 13 11 17 17 C 1.55051 * 106.38056 * 312.88171 * 16 15 13 18 18 S 1.82912 * 110.31913 * 205.00172 * 13 11 10 19 19 O 1.42103 * 109.35546 * 125.57559 * 18 13 11 20 20 O 1.42093 * 109.47714 * 352.40577 * 18 13 11 21 21 C 1.40026 * 120.00099 * 270.00093 * 10 9 7 22 22 C 1.38854 * 120.04189 * 112.04920 * 21 10 9 23 23 C 1.38117 * 119.95328 * 179.72310 * 22 21 10 24 24 C 1.38481 * 120.04139 * 0.55123 * 23 22 21 25 25 F 1.35099 * 119.95248 * 179.74662 * 24 23 22 26 26 C 1.38477 * 120.09221 * 359.72364 * 24 23 22 27 27 C 1.38108 * 120.04355 * 359.97438 * 26 24 23 28 28 H 0.97005 * 119.99405 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.47606 * 60.00164 * 9 7 2 30 30 H 1.09003 * 109.47616 * 300.00042 * 9 7 2 31 31 H 1.08997 * 109.64372 * 266.66632 * 15 13 11 32 32 H 1.08997 * 109.64074 * 27.08743 * 15 13 11 33 33 H 1.08999 * 110.26415 * 193.60629 * 16 15 13 34 34 H 1.09004 * 110.03157 * 72.02867 * 16 15 13 35 35 H 1.08997 * 110.78755 * 284.03108 * 17 16 15 36 36 H 1.08991 * 110.79119 * 160.75393 * 17 16 15 37 37 H 1.07998 * 120.02846 * 359.97438 * 22 21 10 38 38 H 1.07999 * 119.98301 * 180.29780 * 23 22 21 39 39 H 1.07991 * 119.97522 * 180.02562 * 26 24 23 40 40 H 1.08001 * 120.02375 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1031 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 7 2.2028 -3.6128 -0.0005 11 6 2.6407 -4.1250 1.1667 12 8 3.3596 -5.1018 1.1686 13 6 2.2370 -3.4840 2.4695 14 1 2.1277 -2.4070 2.3427 15 6 0.9214 -4.1009 2.9847 16 6 0.9508 -4.1165 4.5280 17 6 2.3348 -4.6863 4.9332 18 16 3.4739 -3.8486 3.7668 19 8 3.9254 -2.6305 4.3427 20 8 4.4165 -4.7896 3.2717 21 6 2.6577 -4.1450 -1.2132 22 6 3.9844 -3.9823 -1.5895 23 6 4.4325 -4.5130 -2.7834 24 6 3.5570 -5.1969 -3.6101 25 9 3.9961 -5.7108 -4.7798 26 6 2.2323 -5.3553 -3.2392 27 6 1.7817 -4.8316 -2.0433 28 1 -0.4849 0.8401 -0.0004 29 1 0.6239 -2.5567 -0.8903 30 1 0.6245 -2.5571 0.8897 31 1 0.0772 -3.5032 2.6410 32 1 0.8243 -5.1206 2.6120 33 1 0.1566 -4.7553 4.9142 34 1 0.8367 -3.1035 4.9139 35 1 2.3642 -5.7669 4.7937 36 1 2.5745 -4.4240 5.9636 37 1 4.6663 -3.4448 -0.9474 38 1 5.4654 -4.3909 -3.0743 39 1 1.5513 -5.8893 -3.8851 40 1 0.7485 -4.9556 -1.7542 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565183621.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:46 Heat of formation + Delta-G solvation = -114.053277 kcal Electronic energy + Delta-G solvation = -28316.013146 eV Core-core repulsion = 24138.012881 eV Total energy + Delta-G solvation = -4178.000265 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.66994 -40.17891 -38.18671 -36.79376 -36.03847 -35.55789 -35.15844 -32.77554 -30.91959 -30.69479 -28.89177 -27.19753 -25.62835 -23.42147 -22.67373 -22.47724 -21.53496 -19.69773 -18.33418 -17.56666 -17.30849 -16.93589 -16.53139 -16.17346 -16.00161 -15.83922 -15.35080 -15.12637 -14.59923 -14.47716 -14.30463 -14.07701 -13.73150 -13.48793 -13.32350 -12.98686 -12.73263 -12.50822 -12.34292 -12.13370 -11.96920 -11.82916 -11.79892 -11.68499 -11.46820 -11.20528 -11.09336 -10.87376 -10.85147 -10.52134 -10.34952 -10.10516 -10.00301 -9.47882 -8.85982 -8.71955 -8.65777 -7.82093 -6.34375 -4.43243 0.17241 1.36909 1.50106 2.68143 2.89371 3.19039 3.23206 3.27074 3.38037 3.79209 3.85487 4.17501 4.24555 4.42781 4.49372 4.64340 4.71311 4.81857 4.98593 5.00455 5.01271 5.06934 5.36239 5.44458 5.49735 5.59503 5.63271 5.74985 5.80485 5.94757 5.98041 6.11836 6.33112 6.41219 6.56838 6.68239 6.93330 7.02182 7.35852 7.59395 7.82991 7.89713 8.51214 8.67959 9.26156 10.72087 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.008273 B = 0.005535 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3383.589326 B = 5057.154149 C = 7176.458779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.071 3.929 3 Si 0.894 3.106 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.550 4.550 8 H 0.063 0.937 9 C 0.235 3.765 10 N -0.552 5.552 11 C 0.542 3.458 12 O -0.517 6.517 13 C -0.587 4.587 14 H 0.181 0.819 15 C -0.101 4.101 16 C -0.116 4.116 17 C -0.594 4.594 18 S 2.400 3.600 19 O -0.935 6.935 20 O -0.902 6.902 21 C 0.165 3.835 22 C -0.078 4.078 23 C -0.143 4.143 24 C 0.082 3.918 25 F -0.146 7.146 26 C -0.144 4.144 27 C -0.094 4.094 28 H 0.268 0.732 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.137 0.863 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.844 -8.766 4.126 9.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.134 4.134 3 Si 0.721 3.279 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.588 4.588 8 H 0.081 0.919 9 C 0.117 3.883 10 N -0.280 5.280 11 C 0.328 3.672 12 O -0.393 6.393 13 C -0.697 4.697 14 H 0.199 0.801 15 C -0.139 4.139 16 C -0.154 4.154 17 C -0.723 4.723 18 S 2.580 3.420 19 O -0.932 6.932 20 O -0.899 6.899 21 C 0.073 3.927 22 C -0.098 4.098 23 C -0.162 4.162 24 C 0.063 3.937 25 F -0.125 7.125 26 C -0.164 4.164 27 C -0.114 4.114 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.123 0.877 32 H 0.102 0.898 33 H 0.116 0.884 34 H 0.109 0.891 35 H 0.156 0.844 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.323 -8.954 4.160 9.878 hybrid contribution -0.508 1.075 -0.345 1.239 sum -0.185 -7.878 3.815 8.756 Atomic orbital electron populations 1.69892 1.05995 1.27781 1.48817 1.24904 0.94893 0.99349 0.94207 0.86590 0.79755 0.82304 0.79248 1.19918 1.20936 1.19604 1.21419 0.93774 0.90267 1.53337 0.91861 1.19696 0.87226 0.81945 0.99439 1.45842 1.45442 1.34731 1.01960 1.19123 0.80493 0.83537 0.84046 1.90893 1.36408 1.25099 1.86871 1.30708 1.15462 1.13449 1.10112 0.80128 1.21972 0.95359 1.02492 0.94123 1.22285 0.95314 1.02990 0.94858 1.30699 1.12796 1.13273 1.15571 1.09013 0.77884 0.76611 0.78485 1.93619 1.78610 1.44721 1.76227 1.93672 1.56435 1.61929 1.77881 1.17565 0.92510 0.95131 0.87477 1.21148 0.95610 0.97682 0.95341 1.20942 1.00016 1.00294 0.94939 1.17637 0.93308 0.99554 0.83224 1.91458 1.90118 1.85241 1.45663 1.20880 0.94188 1.03260 0.98049 1.21044 1.00283 0.96270 0.93774 0.92211 0.93937 0.93373 0.87671 0.89752 0.88383 0.89149 0.84449 0.84779 0.84998 0.84770 0.84779 0.84861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.83 13.29 55.43 0.74 -22.09 16 2 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.89 19.91 29.54 -169.99 -5.02 14.89 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 7 C -0.55 -13.39 8.66 -34.44 -0.30 -13.69 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.24 5.07 4.71 -5.20 -0.02 5.04 16 10 N -0.55 -10.89 2.51 -114.72 -0.29 -11.18 16 11 C 0.54 10.42 6.55 -10.98 -0.07 10.35 16 12 O -0.52 -10.99 14.16 -17.89 -0.25 -11.24 16 13 C -0.59 -9.44 2.65 -27.27 -0.07 -9.51 16 14 H 0.18 3.12 6.47 -51.93 -0.34 2.79 16 15 C -0.10 -1.21 5.63 -25.41 -0.14 -1.35 16 16 C -0.12 -1.07 6.52 -24.93 -0.16 -1.23 16 17 C -0.59 -5.89 7.29 38.24 0.28 -5.61 16 18 S 2.40 36.88 5.90 -107.50 -0.63 36.25 16 19 O -0.93 -16.86 18.15 -57.73 -1.05 -17.91 16 20 O -0.90 -17.20 15.53 -66.93 -1.04 -18.24 16 21 C 0.16 3.11 4.75 -83.66 -0.40 2.71 16 22 C -0.08 -1.41 9.55 -39.40 -0.38 -1.79 16 23 C -0.14 -2.25 10.02 -39.54 -0.40 -2.65 16 24 C 0.08 1.27 7.30 -39.40 -0.29 0.98 16 25 F -0.15 -2.19 17.26 2.25 0.04 -2.15 16 26 C -0.14 -2.13 10.02 -39.54 -0.40 -2.52 16 27 C -0.09 -1.54 9.68 -39.40 -0.38 -1.92 16 28 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 29 H 0.04 0.97 7.86 -51.93 -0.41 0.56 16 30 H 0.05 1.00 5.62 -51.93 -0.29 0.71 16 31 H 0.10 1.25 7.20 -51.93 -0.37 0.87 16 32 H 0.08 0.95 7.85 -51.93 -0.41 0.55 16 33 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.14 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.13 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.13 2.39 8.06 -52.49 -0.42 1.97 16 38 H 0.13 1.79 8.06 -52.49 -0.42 1.36 16 39 H 0.13 1.60 8.06 -52.49 -0.42 1.17 16 40 H 0.13 1.96 8.06 -52.49 -0.42 1.53 16 LS Contribution 352.37 15.07 5.31 5.31 Total: -1.00 -32.37 352.37 -9.77 -42.14 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -4.74 Total: 3.75 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: -2.83 Total: -19.52 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: 0.45 Total: -33.27 kcal Atomic # 8 Polarization: -45.04 SS G_CDS: -2.34 Total: -47.38 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Atomic # 16 Polarization: 36.88 SS G_CDS: -0.63 Total: 36.25 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.37 -9.77 -42.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565183621.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.912 kcal (2) G-P(sol) polarization free energy of solvation -32.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds