Wall clock time and date at job start Sat Apr 11 2020 06:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38082 * 120.02416 * 2 1 4 4 C 1.38502 * 120.04746 * 179.97438 * 3 2 1 5 5 F 1.35097 * 119.94821 * 180.02562 * 4 3 2 6 6 C 1.38544 * 120.10507 * 0.04512 * 4 3 2 7 7 C 1.38038 * 120.05041 * 359.70069 * 6 4 3 8 8 C 1.38937 * 120.02216 * 179.97438 * 2 1 3 9 9 N 1.39836 * 120.05481 * 359.97438 * 8 2 1 10 10 C 1.37130 * 119.99828 * 270.00109 * 9 8 2 11 11 H 1.07996 * 120.00004 * 307.84994 * 10 9 8 12 12 C 1.38886 * 119.99972 * 127.84715 * 10 9 8 13 13 N 1.31433 * 119.99742 * 351.90762 * 12 10 9 14 14 Si 1.86793 * 120.00058 * 171.90327 * 12 10 9 15 15 H 1.48501 * 109.47325 * 240.00199 * 14 12 10 16 16 H 1.48501 * 109.47112 * 359.97438 * 14 12 10 17 17 H 1.48503 * 109.47265 * 120.00344 * 14 12 10 18 18 C 1.34777 * 120.00320 * 90.00001 * 9 8 2 19 19 O 1.21284 * 119.99462 * 354.34937 * 18 9 8 20 20 C 1.50694 * 120.00013 * 174.34681 * 18 9 8 21 21 H 1.08991 * 110.28992 * 22.08351 * 20 18 9 22 22 C 1.54165 * 110.31649 * 144.19989 * 20 18 9 23 23 C 1.53880 * 108.70644 * 146.81333 * 22 20 18 24 24 C 1.55054 * 106.61876 * 312.81440 * 23 22 20 25 25 S 1.82919 * 110.31970 * 259.85516 * 20 18 9 26 26 O 1.42101 * 109.35243 * 352.37834 * 25 20 18 27 27 O 1.42099 * 109.35067 * 125.57579 * 25 20 18 28 28 H 1.08997 * 109.47172 * 270.02440 * 1 2 3 29 29 H 1.09003 * 109.46883 * 30.01944 * 1 2 3 30 30 H 1.08997 * 109.47155 * 150.02005 * 1 2 3 31 31 H 1.07988 * 119.97754 * 359.97438 * 3 2 1 32 32 H 1.07999 * 119.97165 * 179.97438 * 6 4 3 33 33 H 1.08001 * 120.02818 * 180.29611 * 7 6 4 34 34 H 0.96996 * 120.00121 * 356.38557 * 13 12 10 35 35 H 1.09006 * 109.64603 * 266.65746 * 22 20 18 36 36 H 1.09002 * 109.65254 * 26.95327 * 22 20 18 37 37 H 1.08994 * 110.03092 * 72.10145 * 23 22 20 38 38 H 1.09002 * 110.02612 * 193.53050 * 23 22 20 39 39 H 1.09000 * 110.78759 * 160.71006 * 24 23 22 40 40 H 1.09000 * 110.78642 * 284.16564 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1955 0.0000 4 6 3.5830 1.1961 0.0005 5 9 4.2569 2.3670 0.0011 6 6 4.2784 -0.0022 0.0001 7 6 3.5919 -1.1998 0.0054 8 6 2.2022 -1.2030 0.0005 9 7 1.5046 -2.4149 0.0016 10 6 1.1631 -3.0083 1.1898 11 1 1.9167 -3.1794 1.9442 12 6 -0.1520 -3.3892 1.4229 13 7 -1.0967 -3.0407 0.5782 14 14 -0.5781 -4.3969 2.9369 15 1 -1.1798 -5.6885 2.5187 16 1 0.6555 -4.6571 3.7216 17 1 -1.5487 -3.6467 3.7738 18 6 1.1680 -2.9998 -1.1650 19 8 1.3783 -2.4271 -2.2133 20 6 0.5304 -4.3652 -1.1669 21 1 0.0645 -4.5662 -0.2023 22 6 -0.5132 -4.4671 -2.2971 23 6 -0.5268 -5.9115 -2.8275 24 6 0.9534 -6.3173 -3.0472 25 16 1.7765 -5.6475 -1.5528 26 8 2.9960 -5.0215 -1.9274 27 8 1.7698 -6.6336 -0.5296 28 1 -0.3633 0.0004 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8901 -0.5135 31 1 1.6580 2.1308 -0.0004 32 1 5.3584 0.0008 0.0001 33 1 4.1344 -2.1336 0.0099 34 1 -0.8846 -2.4737 -0.1797 35 1 -1.4991 -4.2097 -1.9098 36 1 -0.2483 -3.7830 -3.1034 37 1 -0.9907 -6.5734 -2.0962 38 1 -1.0705 -5.9575 -3.7712 39 1 1.0548 -7.4016 -3.0917 40 1 1.3520 -5.8531 -3.9493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602392511.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:45 Heat of formation + Delta-G solvation = -109.723957 kcal Electronic energy + Delta-G solvation = -29316.450973 eV Core-core repulsion = 25138.638441 eV Total energy + Delta-G solvation = -4177.812532 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -48.54009 -40.12912 -38.05225 -36.61139 -35.78456 -35.38357 -35.15095 -32.25621 -32.24764 -29.80919 -28.81148 -26.48777 -25.40736 -24.78777 -22.49435 -21.56443 -20.94527 -19.85250 -18.81593 -17.95542 -17.00143 -16.71901 -16.30483 -16.17798 -16.08152 -15.53198 -15.22430 -14.94029 -14.31966 -14.07675 -13.95010 -13.73547 -13.58336 -13.39952 -13.00769 -12.85124 -12.78604 -12.43325 -12.26694 -12.02315 -11.89482 -11.67728 -11.58178 -11.49098 -11.35169 -11.23106 -11.05171 -10.68426 -10.64659 -10.39886 -10.29701 -10.13635 -9.88881 -9.21993 -8.84121 -8.49170 -8.10517 -7.96322 -6.95095 -4.64793 0.39088 1.59178 1.67342 2.88986 3.15425 3.19197 3.35614 3.50157 3.81767 3.96674 4.03547 4.19447 4.45252 4.62605 4.68735 4.70458 4.95202 5.02305 5.16352 5.19750 5.25954 5.39855 5.55901 5.62116 5.77552 5.79436 5.85740 6.02389 6.08849 6.20474 6.23410 6.28550 6.43892 6.50131 6.50701 6.63691 6.73768 7.06270 7.17218 7.56186 7.86400 7.96241 8.70436 8.91205 9.38813 10.28404 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.012316 B = 0.005456 C = 0.004598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.834570 B = 5130.869592 C = 6087.615672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.049 4.049 3 C -0.153 4.153 4 C 0.082 3.918 5 F -0.148 7.148 6 C -0.154 4.154 7 C -0.088 4.088 8 C 0.162 3.838 9 N -0.425 5.425 10 C -0.426 4.426 11 H 0.088 0.912 12 C 0.011 3.989 13 N -0.866 5.866 14 Si 1.076 2.924 15 H -0.273 1.273 16 H -0.277 1.277 17 H -0.278 1.278 18 C 0.531 3.469 19 O -0.563 6.563 20 C -0.567 4.567 21 H 0.194 0.806 22 C -0.103 4.103 23 C -0.115 4.115 24 C -0.595 4.595 25 S 2.389 3.611 26 O -0.933 6.933 27 O -0.935 6.935 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.282 0.718 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.131 0.869 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.226 -1.823 -2.900 3.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.050 4.050 3 C -0.172 4.172 4 C 0.063 3.937 5 F -0.127 7.127 6 C -0.174 4.174 7 C -0.107 4.107 8 C 0.072 3.928 9 N -0.145 5.145 10 C -0.552 4.552 11 H 0.106 0.894 12 C -0.196 4.196 13 N -0.502 5.502 14 Si 0.900 3.100 15 H -0.198 1.198 16 H -0.202 1.202 17 H -0.204 1.204 18 C 0.319 3.681 19 O -0.444 6.444 20 C -0.679 4.679 21 H 0.211 0.789 22 C -0.142 4.142 23 C -0.153 4.153 24 C -0.725 4.725 25 S 2.571 3.429 26 O -0.930 6.930 27 O -0.932 6.932 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.097 0.903 35 H 0.119 0.881 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.150 0.850 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.494 -2.506 -2.208 3.376 hybrid contribution 0.636 1.257 -0.991 1.722 sum 0.142 -1.249 -3.199 3.437 Atomic orbital electron populations 1.20773 0.90183 1.02665 1.02696 1.20006 0.96936 0.91394 0.96711 1.20777 0.92021 0.98615 1.05810 1.17591 0.90052 0.80921 1.05158 1.91436 1.80535 1.46409 1.94343 1.20853 1.00238 0.90865 1.05404 1.21208 0.93538 0.97844 0.98104 1.17848 0.90506 0.86652 0.97826 1.40952 1.51666 1.16070 1.05782 1.20539 0.96726 1.42654 0.95330 0.89419 1.26770 0.91272 0.98308 1.03295 1.70804 1.34538 1.30468 1.14374 0.83357 0.76646 0.76237 0.73795 1.19774 1.20195 1.20402 1.19149 0.79851 0.85396 0.83669 1.90593 1.57370 1.64884 1.31533 1.30678 1.14482 1.10224 1.12554 0.78892 1.21921 1.00157 0.96323 0.95789 1.22191 0.92819 0.96783 1.03538 1.30673 1.09450 1.11598 1.20738 1.09248 0.77709 0.77799 0.78121 1.93577 1.40585 1.75748 1.83104 1.93578 1.87219 1.57867 1.54520 0.90743 0.92489 0.90307 0.85197 0.85072 0.84983 0.90325 0.88122 0.89125 0.89592 0.88765 0.85035 0.84621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.09 9.77 36.01 0.35 -1.74 16 2 C -0.05 -1.00 5.90 -104.42 -0.62 -1.62 16 3 C -0.15 -2.75 9.67 -39.54 -0.38 -3.13 16 4 C 0.08 1.45 7.30 -39.37 -0.29 1.17 16 5 F -0.15 -2.48 17.26 2.25 0.04 -2.44 16 6 C -0.15 -2.73 10.02 -39.54 -0.40 -3.13 16 7 C -0.09 -1.79 9.97 -39.38 -0.39 -2.18 16 8 C 0.16 3.63 4.40 -83.67 -0.37 3.26 16 9 N -0.43 -10.10 1.49 -58.97 -0.09 -10.19 16 10 C -0.43 -10.18 8.77 -14.94 -0.13 -10.31 16 11 H 0.09 2.10 7.84 -52.49 -0.41 1.69 16 12 C 0.01 0.26 3.41 -17.48 -0.06 0.20 16 13 N -0.87 -20.31 11.98 55.49 0.66 -19.65 16 14 Si 1.08 21.07 29.93 -169.99 -5.09 15.99 16 15 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 16 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 17 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 18 C 0.53 12.51 3.96 -10.99 -0.04 12.46 16 19 O -0.56 -14.13 15.85 5.55 0.09 -14.05 16 20 C -0.57 -11.60 2.23 -27.28 -0.06 -11.66 16 21 H 0.19 4.20 4.14 -51.93 -0.21 3.99 16 22 C -0.10 -1.71 5.91 -25.66 -0.15 -1.86 16 23 C -0.11 -1.46 6.48 -25.19 -0.16 -1.62 16 24 C -0.60 -7.85 7.31 38.24 0.28 -7.57 16 25 S 2.39 45.08 5.94 -107.50 -0.64 44.44 16 26 O -0.93 -20.55 17.29 -57.71 -1.00 -21.55 16 27 O -0.93 -19.26 18.15 -57.71 -1.05 -20.31 16 28 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 29 H 0.06 0.95 8.09 -51.93 -0.42 0.53 16 30 H 0.08 1.75 4.46 -51.93 -0.23 1.51 16 31 H 0.13 1.99 8.06 -52.49 -0.42 1.57 16 32 H 0.13 1.94 8.06 -52.49 -0.42 1.51 16 33 H 0.13 2.63 8.06 -52.49 -0.42 2.21 16 34 H 0.28 6.70 4.01 -40.82 -0.16 6.54 16 35 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 36 H 0.09 1.55 6.97 -51.93 -0.36 1.18 16 37 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.13 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.14 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 342.83 15.07 5.17 5.17 Total: -1.00 -29.95 342.83 -8.73 -38.68 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -4.40 Total: 11.66 kcal Atomic # 6 Polarization: -25.32 SS G_CDS: -2.42 Total: -27.74 kcal Atomic # 7 Polarization: -30.41 SS G_CDS: 0.58 Total: -29.83 kcal Atomic # 8 Polarization: -53.95 SS G_CDS: -1.96 Total: -55.91 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.04 Total: -2.44 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.09 Total: 15.99 kcal Atomic # 16 Polarization: 45.08 SS G_CDS: -0.64 Total: 44.44 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.95 -8.73 -38.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602392511.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.048 kcal (2) G-P(sol) polarization free energy of solvation -29.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds