Wall clock time and date at job start Sat Apr 11 2020 06:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38080 * 120.02912 * 2 1 4 4 C 1.38501 * 120.05478 * 180.27196 * 3 2 1 5 5 F 1.35096 * 119.94621 * 179.76577 * 4 3 2 6 6 C 1.38538 * 120.10452 * 359.74515 * 4 3 2 7 7 C 1.38045 * 120.04974 * 359.97438 * 6 4 3 8 8 C 1.38941 * 120.02524 * 179.76259 * 2 1 3 9 9 N 1.39839 * 120.04891 * 0.02562 * 8 2 1 10 10 C 1.37123 * 120.00370 * 269.72102 * 9 8 2 11 11 H 1.07998 * 119.99605 * 61.63180 * 10 9 8 12 12 C 1.38873 * 120.00281 * 241.63073 * 10 9 8 13 13 N 1.31426 * 120.00360 * 188.28092 * 12 10 9 14 14 Si 1.86806 * 120.00149 * 8.28257 * 12 10 9 15 15 H 1.48497 * 109.47167 * 268.85896 * 14 12 10 16 16 H 1.48503 * 109.46794 * 28.85954 * 14 12 10 17 17 H 1.48494 * 109.47270 * 148.85488 * 14 12 10 18 18 C 1.34777 * 119.99587 * 89.72782 * 9 8 2 19 19 O 1.21283 * 119.99970 * 355.27965 * 18 9 8 20 20 C 1.50704 * 119.99837 * 175.28180 * 18 9 8 21 21 H 1.09001 * 110.28422 * 332.45062 * 20 18 9 22 22 C 1.54171 * 110.31518 * 210.33959 * 20 18 9 23 23 C 1.53879 * 108.69849 * 213.18594 * 22 20 18 24 24 C 1.55050 * 106.62427 * 47.18117 * 23 22 20 25 25 S 1.82912 * 110.32049 * 94.67568 * 20 18 9 26 26 O 1.42099 * 109.35561 * 234.42546 * 25 20 18 27 27 O 1.42098 * 109.35292 * 7.62592 * 25 20 18 28 28 H 1.09001 * 109.47094 * 270.23816 * 1 2 3 29 29 H 1.08998 * 109.46946 * 30.23673 * 1 2 3 30 30 H 1.08996 * 109.47093 * 150.23602 * 1 2 3 31 31 H 1.08007 * 119.97390 * 0.03869 * 3 2 1 32 32 H 1.07995 * 119.97753 * 179.97438 * 6 4 3 33 33 H 1.08000 * 120.02547 * 180.02562 * 7 6 4 34 34 H 0.96996 * 120.00417 * 179.97438 * 13 12 10 35 35 H 1.08997 * 109.64685 * 333.03876 * 22 20 18 36 36 H 1.08994 * 109.64401 * 93.34028 * 22 20 18 37 37 H 1.09004 * 110.02765 * 166.46946 * 23 22 20 38 38 H 1.09002 * 110.03171 * 287.84453 * 23 22 20 39 39 H 1.09003 * 110.79036 * 75.83509 * 24 23 22 40 40 H 1.08999 * 110.79110 * 199.10321 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1955 0.0000 4 6 3.5830 1.1961 -0.0057 5 9 4.2568 2.3670 -0.0105 6 6 4.2784 -0.0021 -0.0061 7 6 3.5920 -1.1998 -0.0002 8 6 2.2022 -1.2029 0.0050 9 7 1.5046 -2.4149 0.0095 10 6 1.1671 -3.0074 1.1991 11 1 0.5138 -2.4962 1.8907 12 6 1.6653 -4.2647 1.5147 13 7 1.2175 -4.9023 2.5731 14 14 2.9720 -5.0496 0.4349 15 1 2.3183 -5.8721 -0.6146 16 1 3.7884 -3.9873 -0.2057 17 1 3.8481 -5.9133 1.2665 18 6 1.1641 -3.0007 -1.1556 19 8 1.3863 -2.4362 -2.2058 20 6 0.5072 -4.3570 -1.1533 21 1 0.8040 -4.9191 -0.2679 22 6 0.8805 -5.1347 -2.4311 23 6 -0.3116 -6.0194 -2.8362 24 6 -1.5736 -5.1211 -2.7691 25 16 -1.3124 -4.1816 -1.2172 26 8 -1.8924 -4.8933 -0.1326 27 8 -1.6467 -2.8172 -1.4307 28 1 -0.3633 0.0043 1.0277 29 1 -0.3633 0.8878 -0.5175 30 1 -0.3633 -0.8921 -0.5101 31 1 1.6580 2.1309 0.0006 32 1 5.3584 0.0008 -0.0109 33 1 4.1345 -2.1336 -0.0001 34 1 1.5652 -5.7807 2.7933 35 1 1.1060 -4.4332 -3.2343 36 1 1.7520 -5.7601 -2.2380 37 1 -0.1721 -6.3919 -3.8510 38 1 -0.4096 -6.8544 -2.1424 39 1 -1.6159 -4.4487 -3.6260 40 1 -2.4774 -5.7275 -2.7102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602392513.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:48 Heat of formation + Delta-G solvation = -118.984550 kcal Electronic energy + Delta-G solvation = -29403.880488 eV Core-core repulsion = 25225.666387 eV Total energy + Delta-G solvation = -4178.214101 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.90487 -41.81148 -39.65023 -38.10719 -37.24008 -36.87402 -36.68567 -34.30465 -33.69639 -31.80730 -30.34012 -28.13203 -26.95022 -26.50940 -24.03080 -22.98970 -22.26952 -21.57846 -20.17412 -19.66099 -18.72509 -18.34997 -17.99161 -17.66179 -17.58282 -17.10308 -16.59862 -16.43029 -16.19738 -15.69022 -15.46472 -15.17584 -15.00391 -14.86103 -14.64603 -14.47042 -14.33110 -14.13473 -13.79025 -13.50996 -13.35981 -13.24091 -13.10756 -13.05278 -12.85452 -12.73028 -12.66434 -12.37767 -12.12528 -11.89198 -11.86152 -11.67430 -11.21473 -11.07923 -10.87701 -9.95825 -9.77621 -9.49998 -8.59243 -6.61795 -1.03402 0.07983 0.19635 1.10501 1.22632 1.30440 1.40866 1.75226 2.03652 2.18907 2.49439 2.62037 2.75207 3.06447 3.18849 3.38239 3.56313 3.71924 3.76560 3.80790 3.82862 4.11241 4.13039 4.27562 4.36081 4.56447 4.57787 4.60049 4.62905 4.71169 4.81044 4.92708 4.98829 5.03663 5.13780 5.14695 5.25164 5.51247 5.59157 5.68335 5.98710 6.24236 6.74306 7.03056 7.50795 8.50345 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.014099 B = 0.005496 C = 0.004855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.415693 B = 5093.458410 C = 5765.962414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.068 4.068 3 C -0.142 4.142 4 C 0.089 3.911 5 F -0.137 7.137 6 C -0.144 4.144 7 C -0.106 4.106 8 C 0.123 3.877 9 N -0.435 5.435 10 C -0.368 4.368 11 H 0.068 0.932 12 C 0.041 3.959 13 N -0.884 5.884 14 Si 0.879 3.121 15 H -0.199 1.199 16 H -0.255 1.255 17 H -0.276 1.276 18 C 0.526 3.474 19 O -0.567 6.567 20 C -0.602 4.602 21 H 0.156 0.844 22 C -0.119 4.119 23 C -0.113 4.113 24 C -0.549 4.549 25 S 2.372 3.628 26 O -0.963 6.963 27 O -0.966 6.966 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.056 0.944 31 H 0.163 0.837 32 H 0.163 0.837 33 H 0.127 0.873 34 H 0.287 0.713 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.147 0.853 38 H 0.101 0.899 39 H 0.165 0.835 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.668 -1.499 -11.305 11.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.069 4.069 3 C -0.161 4.161 4 C 0.069 3.931 5 F -0.116 7.116 6 C -0.163 4.163 7 C -0.126 4.126 8 C 0.034 3.966 9 N -0.154 5.154 10 C -0.495 4.495 11 H 0.085 0.915 12 C -0.166 4.166 13 N -0.517 5.517 14 Si 0.700 3.300 15 H -0.122 1.122 16 H -0.179 1.179 17 H -0.202 1.202 18 C 0.315 3.685 19 O -0.449 6.449 20 C -0.711 4.711 21 H 0.174 0.826 22 C -0.157 4.157 23 C -0.151 4.151 24 C -0.683 4.683 25 S 2.558 3.442 26 O -0.960 6.960 27 O -0.963 6.963 28 H 0.089 0.911 29 H 0.109 0.891 30 H 0.075 0.925 31 H 0.180 0.820 32 H 0.181 0.819 33 H 0.145 0.855 34 H 0.098 0.902 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.165 0.835 38 H 0.119 0.881 39 H 0.183 0.817 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 0.160 -0.863 -11.006 11.041 hybrid contribution 1.240 -0.473 0.428 1.394 sum 1.400 -1.336 -10.578 10.753 Atomic orbital electron populations 1.20766 0.90048 1.03661 1.02536 1.20150 0.97314 0.91764 0.97708 1.21038 0.92337 0.98851 1.03827 1.17609 0.90087 0.81212 1.04143 1.91472 1.80275 1.45723 1.94136 1.21118 1.01760 0.89850 1.03564 1.21376 0.93076 0.98890 0.99226 1.18212 0.91226 0.86874 1.00312 1.40985 1.50247 1.19002 1.05215 1.18766 1.31496 1.02383 0.96805 0.91464 1.26290 0.97001 0.96882 0.96467 1.69727 1.41258 1.14609 1.26155 0.87055 0.80707 0.81012 0.81182 1.12217 1.17922 1.20205 1.19670 0.79280 0.85831 0.83766 1.90551 1.57216 1.65671 1.31452 1.30723 1.26923 1.02976 1.10496 0.82642 1.22411 1.01855 0.99135 0.92340 1.22384 0.87771 0.97056 1.07920 1.30528 1.08614 1.12802 1.16396 1.09648 0.77390 0.76673 0.80480 1.93563 1.74118 1.74727 1.53619 1.93508 1.81439 1.34424 1.86963 0.91070 0.89116 0.92480 0.81974 0.81923 0.85493 0.90245 0.87825 0.87646 0.83531 0.88062 0.81665 0.80816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.52 9.77 71.24 0.70 -3.83 16 2 C -0.07 -2.76 5.90 -19.73 -0.12 -2.88 16 3 C -0.14 -4.75 9.67 22.30 0.22 -4.54 16 4 C 0.09 2.89 7.30 22.40 0.16 3.05 16 5 F -0.14 -4.09 17.26 44.97 0.78 -3.31 16 6 C -0.14 -4.76 10.02 22.30 0.22 -4.54 16 7 C -0.11 -4.29 9.97 22.40 0.22 -4.06 16 8 C 0.12 5.57 4.40 38.21 0.17 5.74 16 9 N -0.43 -21.11 0.99 -458.88 -0.46 -21.57 16 10 C -0.37 -19.65 9.16 84.02 0.77 -18.88 16 11 H 0.07 4.03 8.06 -2.91 -0.02 4.01 16 12 C 0.04 2.10 4.29 84.91 0.36 2.46 16 13 N -0.88 -48.42 13.96 21.65 0.30 -48.12 16 14 Si 0.88 36.79 24.32 68.60 1.67 38.46 16 15 H -0.20 -6.84 4.00 99.48 0.40 -6.44 16 16 H -0.25 -10.74 5.22 99.48 0.52 -10.22 16 17 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 18 C 0.53 24.09 4.04 87.66 0.35 24.45 16 19 O -0.57 -26.80 15.71 -3.04 -0.05 -26.85 16 20 C -0.60 -23.59 1.84 30.25 0.06 -23.54 16 21 H 0.16 6.62 3.03 -2.39 -0.01 6.61 16 22 C -0.12 -3.24 5.57 31.29 0.17 -3.07 16 23 C -0.11 -2.00 6.48 31.59 0.20 -1.79 16 24 C -0.55 -10.95 7.31 72.68 0.53 -10.42 16 25 S 2.37 88.23 5.94 -56.49 -0.34 87.90 16 26 O -0.96 -42.45 18.15 -127.49 -2.31 -44.77 16 27 O -0.97 -42.04 16.33 -127.49 -2.08 -44.12 16 28 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 29 H 0.09 2.95 8.09 -2.39 -0.02 2.93 16 30 H 0.06 2.65 5.91 -2.39 -0.01 2.63 16 31 H 0.16 4.35 8.06 -2.91 -0.02 4.33 16 32 H 0.16 4.23 8.06 -2.91 -0.02 4.20 16 33 H 0.13 5.12 6.15 -2.91 -0.02 5.10 16 34 H 0.29 14.41 8.31 -92.71 -0.77 13.64 16 35 H 0.10 2.81 6.89 -2.39 -0.02 2.80 16 36 H 0.11 2.63 6.09 -2.39 -0.01 2.62 16 37 H 0.15 1.39 8.14 -2.38 -0.02 1.37 16 38 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.17 2.60 8.14 -2.39 -0.02 2.58 16 40 H 0.17 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -74.29 334.03 2.14 -72.15 By element: Atomic # 1 Polarization: 31.48 SS G_CDS: 0.60 Total: 32.08 kcal Atomic # 6 Polarization: -45.88 SS G_CDS: 4.03 Total: -41.85 kcal Atomic # 7 Polarization: -69.54 SS G_CDS: -0.15 Total: -69.69 kcal Atomic # 8 Polarization: -111.29 SS G_CDS: -4.44 Total: -115.73 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 0.78 Total: -3.31 kcal Atomic # 14 Polarization: 36.79 SS G_CDS: 1.67 Total: 38.46 kcal Atomic # 16 Polarization: 88.23 SS G_CDS: -0.34 Total: 87.90 kcal Total: -74.29 2.14 -72.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602392513.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.834 kcal (2) G-P(sol) polarization free energy of solvation -74.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds