Wall clock time and date at job start Sat Apr 11 2020 06:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38085 * 120.02886 * 2 1 4 4 C 1.38504 * 120.04935 * 180.29619 * 3 2 1 5 5 F 1.35101 * 119.94291 * 179.71934 * 4 3 2 6 6 C 1.38533 * 120.10775 * 359.70575 * 4 3 2 7 7 C 1.38047 * 120.05195 * 0.02562 * 6 4 3 8 8 C 1.38941 * 120.02238 * 179.74478 * 2 1 3 9 9 N 1.39830 * 120.05394 * 0.02562 * 8 2 1 10 10 C 1.37131 * 120.00265 * 89.72442 * 9 8 2 11 11 H 1.07996 * 119.99752 * 185.27467 * 10 9 8 12 12 C 1.38874 * 119.99885 * 5.26933 * 10 9 8 13 13 N 1.31431 * 120.00028 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00227 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.46669 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47154 * 119.99948 * 14 12 10 17 17 H 1.48495 * 109.47100 * 239.99951 * 14 12 10 18 18 C 1.34784 * 120.00000 * 269.72066 * 9 8 2 19 19 O 1.21280 * 119.99948 * 5.38295 * 18 9 8 20 20 C 1.50700 * 119.99847 * 185.38499 * 18 9 8 21 21 H 1.08996 * 109.53770 * 24.95710 * 20 18 9 22 22 C 1.53874 * 109.64309 * 145.32547 * 20 18 9 23 23 C 1.55054 * 106.62026 * 167.03144 * 22 20 18 24 24 S 1.83282 * 102.56588 * 317.56192 * 23 22 20 25 25 O 1.42098 * 109.35475 * 136.61648 * 24 23 22 26 26 O 1.42110 * 109.35373 * 269.68192 * 24 23 22 27 27 C 1.54642 * 109.56279 * 264.55832 * 20 18 9 28 28 H 1.08995 * 109.47636 * 270.25657 * 1 2 3 29 29 H 1.09000 * 109.46619 * 30.25516 * 1 2 3 30 30 H 1.09002 * 109.47134 * 150.24873 * 1 2 3 31 31 H 1.08000 * 119.97408 * 0.02562 * 3 2 1 32 32 H 1.08001 * 119.97857 * 179.97438 * 6 4 3 33 33 H 1.08002 * 120.02495 * 179.97438 * 7 6 4 34 34 H 0.97000 * 120.00114 * 179.97438 * 13 12 10 35 35 H 1.08994 * 110.03246 * 47.74045 * 22 20 18 36 36 H 1.08999 * 110.06498 * 286.33774 * 22 20 18 37 37 H 1.09009 * 110.78625 * 199.29634 * 23 22 20 38 38 H 1.08996 * 110.79019 * 75.83378 * 23 22 20 39 39 H 1.08999 * 110.38952 * 93.35501 * 27 20 18 40 40 H 1.09000 * 110.44827 * 331.01858 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1955 0.0000 4 6 3.5830 1.1960 -0.0062 5 9 4.2569 2.3669 -0.0119 6 6 4.2784 -0.0022 -0.0063 7 6 3.5919 -1.1999 -0.0007 8 6 2.2021 -1.2030 0.0054 9 7 1.5046 -2.4149 0.0102 10 6 1.1580 -3.0113 -1.1749 11 1 0.5465 -3.9015 -1.1729 12 6 1.5934 -2.4707 -2.3778 13 7 2.3380 -1.3876 -2.3802 14 14 1.1208 -3.2827 -3.9923 15 1 0.2837 -4.4784 -3.7185 16 1 0.3529 -2.3213 -4.8238 17 1 2.3494 -3.6936 -4.7180 18 6 1.1729 -2.9968 1.1798 19 8 1.3920 -2.4237 2.2259 20 6 0.5298 -4.3597 1.1876 21 1 0.8011 -4.8960 0.2783 22 6 1.0090 -5.1508 2.4173 23 6 0.0752 -6.3821 2.5440 24 16 -1.5780 -5.6649 2.2093 25 8 -2.3014 -6.5317 1.3464 26 8 -2.1612 -5.2350 3.4318 27 6 -1.0071 -4.2066 1.2641 28 1 -0.3634 0.0046 1.0276 29 1 -0.3632 0.8877 -0.5178 30 1 -0.3633 -0.8922 -0.5100 31 1 1.6580 2.1308 0.0004 32 1 5.3584 0.0007 -0.0115 33 1 4.1345 -2.1337 -0.0011 34 1 2.6424 -1.0102 -3.2203 35 1 0.9343 -4.5321 3.3116 36 1 2.0392 -5.4768 2.2741 37 1 0.1194 -6.7993 3.5502 38 1 0.3273 -7.1371 1.7995 39 1 -1.4395 -4.2112 0.2636 40 1 -1.2727 -3.2884 1.7880 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602394249.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:57 Heat of formation + Delta-G solvation = -110.414657 kcal Electronic energy + Delta-G solvation = -28585.356869 eV Core-core repulsion = 24407.514387 eV Total energy + Delta-G solvation = -4177.842483 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 341.093 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -48.12847 -39.93977 -37.88472 -36.93286 -35.96218 -35.35262 -34.83594 -31.98946 -31.71810 -30.16321 -28.74064 -26.39591 -25.65797 -24.93255 -22.80682 -21.45665 -20.60965 -19.38196 -18.76404 -17.93774 -17.19814 -16.51610 -16.35014 -15.96835 -15.78398 -15.51373 -15.06313 -14.81842 -14.56863 -14.24056 -14.05170 -13.57616 -13.45994 -13.25897 -12.69856 -12.64555 -12.55892 -12.33742 -12.22688 -12.08838 -12.00293 -11.91683 -11.66300 -11.59369 -11.35302 -11.27173 -11.06286 -10.80814 -10.71822 -10.56375 -10.40604 -10.36157 -10.22544 -9.65880 -8.83671 -8.31297 -7.97311 -7.71298 -6.29032 -4.26121 0.13301 2.16233 2.22042 2.56781 2.92876 3.05660 3.08478 3.35701 3.71211 3.78329 4.03196 4.29008 4.53281 4.54781 4.74730 4.82396 4.94749 4.99901 5.09802 5.17394 5.46362 5.56705 5.61353 5.66324 5.79581 5.85905 5.93951 6.08449 6.16996 6.20217 6.32990 6.33518 6.52592 6.67321 6.92205 7.00042 7.05934 7.16733 7.34957 7.53701 7.75784 8.16057 8.75077 9.08119 9.49061 10.38958 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.013077 B = 0.004410 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.719821 B = 6347.812502 C = 7534.381254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.049 4.049 3 C -0.150 4.150 4 C 0.067 3.933 5 F -0.159 7.159 6 C -0.152 4.152 7 C -0.057 4.057 8 C 0.249 3.751 9 N -0.407 5.407 10 C -0.351 4.351 11 H 0.110 0.890 12 C 0.042 3.958 13 N -0.848 5.848 14 Si 0.923 3.077 15 H -0.266 1.266 16 H -0.279 1.279 17 H -0.279 1.279 18 C 0.473 3.527 19 O -0.587 6.587 20 C -0.090 4.090 21 H 0.116 0.884 22 C -0.105 4.105 23 C -0.585 4.585 24 S 2.383 3.617 25 O -0.946 6.946 26 O -0.941 6.941 27 C -0.570 4.570 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.274 0.726 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.145 0.855 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.133 -4.630 2.842 5.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.050 4.050 3 C -0.169 4.169 4 C 0.048 3.952 5 F -0.138 7.138 6 C -0.172 4.172 7 C -0.077 4.077 8 C 0.158 3.842 9 N -0.123 5.123 10 C -0.477 4.477 11 H 0.127 0.873 12 C -0.165 4.165 13 N -0.484 5.484 14 Si 0.749 3.251 15 H -0.191 1.191 16 H -0.204 1.204 17 H -0.204 1.204 18 C 0.262 3.738 19 O -0.471 6.471 20 C -0.113 4.113 21 H 0.134 0.866 22 C -0.144 4.144 23 C -0.715 4.715 24 S 2.568 3.432 25 O -0.943 6.943 26 O -0.938 6.938 27 C -0.701 4.701 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.131 0.869 34 H 0.086 0.914 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.154 0.846 38 H 0.155 0.845 39 H 0.163 0.837 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.844 -4.492 3.409 5.933 hybrid contribution 0.844 0.188 -1.591 1.811 sum -1.001 -4.305 1.818 4.779 Atomic orbital electron populations 1.20625 0.91773 1.02693 1.01028 1.19468 0.95592 0.91510 0.98465 1.20491 0.91941 0.98000 1.06498 1.17421 0.90008 0.80530 1.07264 1.91382 1.80756 1.46931 1.94722 1.20558 0.99139 0.91227 1.06281 1.20604 0.93287 0.96465 0.97347 1.16785 0.89785 0.84717 0.92949 1.41315 1.48033 1.17268 1.05649 1.19803 1.33855 1.12126 0.81868 0.87254 1.25288 0.95562 0.95927 0.99769 1.69898 1.31995 1.18910 1.27606 0.85902 0.78584 0.79215 0.81380 1.19057 1.20442 1.20447 1.19481 0.83711 0.87356 0.83295 1.90613 1.59537 1.65542 1.31440 1.21597 0.91167 0.97418 1.01073 0.86596 1.22117 1.00676 0.92337 0.99258 1.30584 1.21201 1.08100 1.11581 1.09179 0.78648 0.78825 0.76549 1.93591 1.69590 1.63975 1.67114 1.93605 1.74997 1.81728 1.43507 1.30495 1.04362 1.19704 1.15534 0.92346 0.92826 0.90363 0.86498 0.86500 0.86904 0.91350 0.88255 0.88455 0.84619 0.84534 0.83699 0.84170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.00 9.77 36.00 0.35 -1.65 16 2 C -0.05 -1.03 5.35 -104.42 -0.56 -1.59 16 3 C -0.15 -3.01 9.67 -39.54 -0.38 -3.40 16 4 C 0.07 1.35 7.30 -39.37 -0.29 1.06 16 5 F -0.16 -3.05 17.27 2.25 0.04 -3.02 16 6 C -0.15 -3.03 10.02 -39.54 -0.40 -3.43 16 7 C -0.06 -1.23 8.68 -39.38 -0.34 -1.57 16 8 C 0.25 5.53 2.23 -83.67 -0.19 5.34 16 9 N -0.41 -8.69 1.79 -58.97 -0.11 -8.79 16 10 C -0.35 -7.39 8.53 -14.95 -0.13 -7.52 16 11 H 0.11 2.07 5.90 -52.49 -0.31 1.76 16 12 C 0.04 0.91 5.44 -17.49 -0.10 0.81 16 13 N -0.85 -19.55 9.33 55.49 0.52 -19.03 16 14 Si 0.92 17.43 29.55 -169.99 -5.02 12.41 16 15 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 16 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 17 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 18 C 0.47 9.43 6.47 -10.98 -0.07 9.36 16 19 O -0.59 -13.24 16.04 5.56 0.09 -13.15 16 20 C -0.09 -1.35 2.21 -90.45 -0.20 -1.55 16 21 H 0.12 1.61 6.22 -51.93 -0.32 1.29 16 22 C -0.10 -1.31 5.64 -25.19 -0.14 -1.45 16 23 C -0.58 -5.65 7.31 38.24 0.28 -5.37 16 24 S 2.38 29.38 6.09 -107.50 -0.66 28.73 16 25 O -0.95 -14.19 18.15 -57.73 -1.05 -15.24 16 26 O -0.94 -14.70 18.15 -57.73 -1.05 -15.75 16 27 C -0.57 -7.55 6.76 38.02 0.26 -7.29 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.05 0.91 8.09 -51.93 -0.42 0.49 16 30 H 0.08 1.58 6.91 -51.93 -0.36 1.22 16 31 H 0.12 2.08 8.06 -52.49 -0.42 1.65 16 32 H 0.12 2.02 8.06 -52.49 -0.42 1.60 16 33 H 0.11 2.34 8.06 -52.49 -0.42 1.92 16 34 H 0.27 6.23 8.31 -40.82 -0.34 5.89 16 35 H 0.10 1.34 7.48 -51.93 -0.39 0.95 16 36 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.14 1.06 8.14 -51.92 -0.42 0.64 16 38 H 0.14 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.14 1.72 8.14 -51.93 -0.42 1.30 16 40 H 0.14 1.92 7.89 -51.93 -0.41 1.51 16 LS Contribution 348.75 15.07 5.26 5.26 Total: -1.00 -30.48 348.75 -8.61 -39.09 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -4.73 Total: 7.73 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: -1.90 Total: -18.24 kcal Atomic # 7 Polarization: -28.23 SS G_CDS: 0.41 Total: -27.82 kcal Atomic # 8 Polarization: -42.13 SS G_CDS: -2.01 Total: -44.13 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.04 Total: -3.02 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.02 Total: 12.41 kcal Atomic # 16 Polarization: 29.38 SS G_CDS: -0.66 Total: 28.73 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.48 -8.61 -39.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602394249.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.330 kcal (2) G-P(sol) polarization free energy of solvation -30.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds